YHZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1B | PB | doub | 1.48Å | 1.50Å | |
| O2B | PB | sing | 1.61Å | 1.50Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| PB | O3A | sing | 1.61Å | 1.59Å | |
| PB | C3B | sing | 1.82Å | 1.81Å | |
| O3A | PA | sing | 1.61Å | 1.60Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| O1G | PG | doub | 1.48Å | 1.50Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| O1A | PA | doub | 1.48Å | 1.49Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
| C8 | N7 | sing | 1.46Å | 1.31Å | |
| C4 | C5 | sing | 1.39Å | 1.38Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
| PA | O5' | sing | 1.61Å | 1.61Å | |
| PA | O2A | sing | 1.61Å | 1.49Å | |
| N7 | C5 | sing | 1.40Å | 1.39Å | |
| C5 | C6 | doub | 1.40Å | 1.41Å | Aromatic |
| O3G | PG | sing | 1.61Å | 1.50Å | |
| N1 | C6 | sing | 1.33Å | 1.35Å | Aromatic |
| C6 | N6 | sing | 1.39Å | 1.33Å | |
| PG | C3B | sing | 1.82Å | 1.79Å | |
| PG | O2G | sing | 1.61Å | 1.50Å | |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C1' | C8 | sing | 1.53Å | 2.52Å | |
| O2G | H1 | sing | 0.97Å | 0.95Å | |
| O3G | H2 | sing | 0.97Å | 0.95Å | |
| O2B | H3 | sing | 0.97Å | 0.95Å | |
| C3B | H4 | sing | 1.09Å | 1.10Å | |
| C3B | H5 | sing | 1.09Å | 1.10Å | |
| O2A | H6 | sing | 0.97Å | 0.95Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C5' | H8 | sing | 1.09Å | 1.10Å | |
| C4' | H9 | sing | 1.09Å | 1.10Å | |
| C3' | H10 | sing | 1.09Å | 1.10Å | |
| O3' | H11 | sing | 0.97Å | 0.95Å | |
| C2' | H12 | sing | 1.09Å | 1.10Å | |
| O2' | H13 | sing | 0.97Å | 0.95Å | |
| C1' | H14 | sing | 1.09Å | 1.10Å | |
| C8 | H15 | sing | 1.09Å | 1.10Å | |
| C8 | H16 | sing | 1.09Å | 1.10Å | |
| N7 | H17 | sing | 0.97Å | 1.00Å | |
| N6 | H18 | sing | 0.97Å | 1.00Å | |
| N6 | H19 | sing | 0.97Å | 1.00Å | |
| C2 | H20 | sing | 1.08Å | 1.08Å | |
| C4 | H21 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1B | PB | O2B | 116.1° | 109.5° |
| O1B | PB | O3A | 108.9° | 109.5° |
| O1B | PB | C3B | 107.3° | 109.5° |
| O2B | PB | O3A | 110.4° | 109.4° |
| O2B | PB | C3B | 107.9° | 109.5° |
| PB | O2B | H3 | 109.5° | 114.0° |
| C1' | O4' | C4' | 110.8° | 105.3° |
| O4' | C1' | C2' | 107.6° | 104.8° |
| O4' | C1' | C8 | 85.4° | 110.4° |
| O4' | C1' | H14 | 121.7° | 110.4° |
| O4' | C4' | C5' | 109.0° | 110.4° |
| O4' | C4' | C3' | 105.1° | 104.8° |
| O4' | C4' | H9 | 109.2° | 110.5° |
| O3A | PB | C3B | 105.7° | 109.5° |
| PB | O3A | PA | 132.7° | 134.0° |
| PB | C3B | PG | 112.0° | 109.5° |
| PB | C3B | H4 | 108.8° | 109.5° |
| PB | C3B | H5 | 108.8° | 109.5° |
| O3A | PA | O1A | 107.9° | 109.5° |
| O3A | PA | O5' | 102.1° | 109.5° |
| O3A | PA | O2A | 108.6° | 109.5° |
| C4' | C5' | O5' | 110.2° | 109.4° |
| C5' | C4' | C3' | 116.8° | 110.4° |
| C4' | C5' | H7 | 109.3° | 109.5° |
| C4' | C5' | H8 | 109.3° | 109.4° |
| C5' | C4' | H9 | 108.4° | 110.3° |
| C5' | O5' | PA | 120.8° | 123.0° |
| O5' | C5' | H7 | 109.3° | 109.5° |
| O5' | C5' | H8 | 109.3° | 109.5° |
| O1G | PG | O3G | 112.1° | 109.5° |
| O1G | PG | C3B | 106.3° | 109.4° |
| O1G | PG | O2G | 112.2° | 109.4° |
| C1' | C2' | O2' | 112.0° | 110.6° |
| C1' | C2' | C3' | 102.3° | 104.0° |
| C2' | C1' | C8 | 110.6° | 110.4° |
| C1' | C2' | H12 | 109.5° | 110.5° |
| C2' | C1' | H14 | 119.0° | 110.4° |
| O1A | PA | O5' | 109.6° | 109.5° |
| O1A | PA | O2A | 118.0° | 109.5° |
| C4' | C3' | C2' | 103.0° | 104.1° |
| C4' | C3' | O3' | 110.5° | 110.5° |
| C3' | C4' | H9 | 108.1° | 110.3° |
| C4' | C3' | H10 | 110.2° | 110.5° |
| C4 | N3 | C2 | 111.0° | 121.0° |
| N3 | C4 | C5 | 126.4° | 119.2° |
| N3 | C4 | H21 | 116.8° | 120.4° |
| N3 | C2 | N1 | 129.3° | 122.0° |
| N3 | C2 | H20 | 115.3° | 119.0° |
| C8 | N7 | C5 | 104.2° | 120.0° |
| N7 | C8 | C1' | 141.1° | 109.5° |
| N7 | C8 | H15 | 101.1° | 109.5° |
| N7 | C8 | H16 | 101.1° | 109.4° |
| C8 | N7 | H17 | 110.8° | 120.0° |
| C4 | C5 | N7 | 110.4° | 120.9° |
| C4 | C5 | C6 | 117.4° | 118.2° |
| C5 | C4 | H21 | 116.8° | 120.4° |
| C2 | N1 | C6 | 118.4° | 120.7° |
| N1 | C2 | H20 | 115.4° | 119.0° |
| O5' | PA | O2A | 109.5° | 109.5° |
| PA | O2A | H6 | 109.5° | 114.0° |
| N7 | C5 | C6 | 132.2° | 120.9° |
| C5 | N7 | H17 | 110.7° | 120.0° |
| C5 | C6 | N1 | 117.5° | 118.9° |
| C5 | C6 | N6 | 123.8° | 120.6° |
| O3G | PG | C3B | 106.5° | 109.5° |
| O3G | PG | O2G | 112.3° | 109.5° |
| PG | O3G | H2 | 109.5° | 114.0° |
| N1 | C6 | N6 | 118.7° | 120.5° |
| C6 | N6 | H18 | 109.5° | 119.9° |
| C6 | N6 | H19 | 109.4° | 120.0° |
| C3B | PG | O2G | 106.9° | 109.5° |
| PG | C3B | H4 | 108.9° | 109.4° |
| PG | C3B | H5 | 108.8° | 109.4° |
| PG | O2G | H1 | 109.5° | 114.0° |
| O2' | C2' | C3' | 112.0° | 110.5° |
| O2' | C2' | H12 | 111.2° | 110.5° |
| C2' | O2' | H13 | 109.5° | 114.0° |
| C2' | C3' | O3' | 110.8° | 110.5° |
| C2' | C3' | H10 | 110.2° | 110.6° |
| C3' | C2' | H12 | 109.4° | 110.5° |
| O3' | C3' | H10 | 111.8° | 110.5° |
| C3' | O3' | H11 | 109.5° | 114.0° |
| C8 | C1' | H14 | 107.1° | 110.4° |
| C1' | C8 | H15 | 101.1° | 109.5° |
| C1' | C8 | H16 | 101.1° | 109.4° |
| H4 | C3B | H5 | 109.4° | 109.5° |
| H7 | C5' | H8 | 109.5° | 109.5° |
| H15 | C8 | H16 | 109.5° | 109.5° |
| H18 | N6 | H19 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1B | PB | O2B | O3A | 124.6° | 120.0° |
| O1B | PB | O2B | C3B | 120.4° | 120.0° |
| O1B | PB | O3A | C3B | 114.9° | 120.0° |
| O1B | PB | O3A | PA | 121.7° | 60.0° |
| O1B | PB | C3B | PG | 40.7° | 60.0° |
| O1B | PB | O2B | H3 | 0.0° | 180.0° |
| O1B | PB | C3B | H4 | 79.7° | 180.0° |
| O1B | PB | C3B | H5 | 161.1° | 60.0° |
| O2B | PB | O3A | C3B | 116.4° | 120.0° |
| O2B | PB | O3A | PA | 109.7° | 60.0° |
| O2B | PB | C3B | PG | 85.1° | 60.0° |
| O2B | PB | C3B | H4 | 154.5° | 60.0° |
| O2B | PB | C3B | H5 | 35.3° | 180.0° |
| C1' | O4' | C4' | C5' | 139.4° | 159.3° |
| O4' | C1' | C2' | C8 | 91.7° | 118.9° |
| O4' | C1' | C2' | H14 | 143.7° | 118.8° |
| C1' | O4' | C4' | C3' | 13.4° | 40.5° |
| O4' | C1' | C8 | N7 | 152.6° | 61.5° |
| O4' | C1' | C2' | O2' | 94.2° | 142.6° |
| O4' | C1' | C2' | C3' | 26.0° | 24.0° |
| O4' | C1' | C8 | H14 | 121.8° | 122.3° |
| C1' | O4' | C4' | H9 | 102.3° | 78.4° |
| O4' | C1' | C2' | H12 | 142.0° | 94.7° |
| O4' | C1' | C8 | H15 | 83.7° | 58.6° |
| O4' | C1' | C8 | H16 | 29.0° | 178.6° |
| O4' | C4' | C5' | C3' | 118.9° | 115.4° |
| O4' | C4' | C5' | H9 | 118.7° | 122.4° |
| O4' | C4' | C5' | O5' | 91.9° | 69.6° |
| C4' | O4' | C1' | C2' | 8.1° | 40.5° |
| O4' | C4' | C3' | H9 | 116.5° | 119.0° |
| O4' | C4' | C3' | C2' | 29.0° | 23.9° |
| O4' | C4' | C3' | O3' | 147.4° | 142.6° |
| C4' | O4' | C1' | C8 | 102.1° | 159.3° |
| O4' | C4' | C5' | H7 | 28.2° | 50.4° |
| O4' | C4' | C5' | H8 | 148.0° | 170.4° |
| O4' | C4' | C3' | H10 | 88.5° | 94.8° |
| C4' | O4' | C1' | H14 | 150.6° | 78.3° |
| PB | O3A | PA | O1A | 172.6° | 40.0° |
| PB | O3A | PA | O5' | 72.0° | 160.0° |
| PB | O3A | PA | O2A | 43.6° | 80.0° |
| O3A | PB | C3B | PG | 156.8° | 180.0° |
| O3A | PB | O2B | H3 | 124.6° | 60.1° |
| O3A | PB | C3B | H4 | 36.4° | 60.0° |
| O3A | PB | C3B | H5 | 82.8° | 60.0° |
| C3B | PB | O3A | PA | 6.8° | 180.0° |
| PB | C3B | PG | O1G | 34.4° | 60.0° |
| PB | C3B | PG | O3G | 85.3° | 180.0° |
| PB | C3B | PG | H4 | 120.4° | 120.0° |
| PB | C3B | PG | H5 | 120.4° | 120.0° |
| PB | C3B | PG | O2G | 154.4° | 60.0° |
| C3B | PB | O2B | H3 | 120.4° | 59.9° |
| PB | C3B | H4 | H5 | 118.8° | 120.1° |
| O3A | PA | O5' | C5' | 23.4° | 175.0° |
| O3A | PA | O1A | O5' | 110.4° | 120.0° |
| O3A | PA | O1A | O2A | 123.5° | 120.0° |
| O3A | PA | O5' | O2A | 115.0° | 120.0° |
| O3A | PA | O2A | H6 | 123.1° | 60.0° |
| C4' | C5' | O5' | H7 | 120.1° | 120.0° |
| C4' | C5' | O5' | H8 | 120.1° | 119.9° |
| C5' | C4' | C3' | H9 | 122.5° | 122.2° |
| C4' | C5' | O5' | PA | 151.3° | 180.0° |
| C5' | C4' | C3' | C2' | 150.0° | 142.8° |
| C5' | C4' | C3' | O3' | 91.5° | 98.5° |
| C4' | C5' | H7 | H8 | 119.6° | 120.0° |
| C5' | C4' | C3' | H10 | 32.5° | 24.1° |
| C5' | O5' | PA | O1A | 90.7° | 55.0° |
| O5' | C5' | C4' | C3' | 27.0° | 175.0° |
| C5' | O5' | PA | O2A | 138.4° | 65.0° |
| O5' | C5' | H7 | H8 | 119.6° | 120.0° |
| O5' | C5' | C4' | H9 | 149.4° | 52.8° |
| O1G | PG | O3G | C3B | 115.8° | 120.0° |
| O1G | PG | O3G | O2G | 127.4° | 120.0° |
| O1G | PG | C3B | O2G | 120.0° | 120.0° |
| O1G | PG | O2G | H1 | 0.0° | 180.0° |
| O1G | PG | O3G | H2 | 0.0° | 60.0° |
| O1G | PG | C3B | H4 | 154.8° | 180.0° |
| O1G | PG | C3B | H5 | 86.0° | 60.0° |
| C1' | C2' | C3' | C4' | 32.8° | 0.0° |
| C2' | C1' | C8 | N7 | 100.3° | 176.9° |
| C1' | C2' | O2' | C3' | 114.3° | 114.7° |
| C1' | C2' | O2' | H12 | 122.9° | 122.7° |
| C1' | C2' | C3' | H12 | 116.1° | 118.6° |
| C1' | C2' | C3' | O3' | 151.0° | 118.6° |
| C2' | C1' | C8 | H14 | 131.2° | 122.3° |
| C1' | C2' | C3' | H10 | 84.7° | 118.7° |
| C1' | C2' | O2' | H13 | 180.0° | 176.2° |
| C2' | C1' | C8 | H15 | 23.4° | 56.8° |
| C2' | C1' | C8 | H16 | 136.0° | 63.2° |
| O1A | PA | O5' | O2A | 130.9° | 120.0° |
| O1A | PA | O2A | H6 | 0.0° | 180.0° |
| C4' | C3' | C2' | O2' | 87.3° | 118.8° |
| C4' | C3' | C2' | O3' | 118.2° | 118.7° |
| C4' | C3' | C2' | H10 | 117.5° | 118.7° |
| C4' | C3' | O3' | H10 | 123.1° | 122.6° |
| C3' | C4' | C5' | H7 | 147.1° | 65.0° |
| C3' | C4' | C5' | H8 | 93.1° | 55.0° |
| C4' | C3' | O3' | H11 | 180.0° | 180.0° |
| C4' | C3' | C2' | H12 | 148.9° | 118.6° |
| N3 | C4 | C5 | H21 | 180.0° | 179.4° |
| C4 | N3 | C2 | N1 | 0.0° | 0.4° |
| N3 | C4 | C5 | N7 | 179.9° | 179.7° |
| N3 | C4 | C5 | C6 | 0.1° | 0.6° |
| C4 | N3 | C2 | H20 | 180.0° | 179.7° |
| C2 | N3 | C4 | C5 | 0.0° | 0.7° |
| N3 | C2 | N1 | H20 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 0.1° | 0.1° |
| C2 | N3 | C4 | H21 | 180.0° | 179.9° |
| C8 | N7 | C5 | C4 | 0.0° | 0.3° |
| C8 | N7 | C5 | H17 | 119.2° | 180.0° |
| C8 | N7 | C5 | C6 | 179.8° | 179.9° |
| N7 | C8 | C1' | H15 | 123.7° | 120.1° |
| N7 | C8 | C1' | H16 | 123.7° | 119.9° |
| N7 | C8 | C1' | H14 | 30.8° | 60.8° |
| N7 | C8 | H15 | H16 | 106.1° | 120.0° |
| C4 | C5 | N7 | C6 | 179.8° | 179.7° |
| C4 | C5 | C6 | N1 | 0.3° | 0.3° |
| C4 | C5 | C6 | N6 | 179.9° | 179.7° |
| C4 | C5 | N7 | H17 | 119.1° | 179.7° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| O5' | PA | O2A | H6 | 126.2° | 60.0° |
| PA | O5' | C5' | H7 | 31.2° | 60.0° |
| PA | O5' | C5' | H8 | 88.5° | 60.1° |
| N7 | C5 | C6 | N1 | 180.0° | 180.0° |
| N7 | C5 | C6 | N6 | 0.1° | 0.0° |
| C5 | N7 | C8 | C1' | 0.0° | 180.0° |
| C5 | N7 | C8 | H15 | 123.7° | 59.9° |
| C5 | N7 | C8 | H16 | 123.7° | 60.1° |
| N7 | C5 | C4 | H21 | 0.0° | 0.3° |
| C5 | C6 | N1 | N6 | 179.8° | 180.0° |
| C6 | C5 | N7 | H17 | 61.1° | 0.0° |
| C5 | C6 | N6 | H18 | 179.8° | 0.1° |
| C5 | C6 | N6 | H19 | 59.8° | 180.0° |
| C6 | C5 | C4 | H21 | 179.9° | 180.0° |
| O3G | PG | C3B | O2G | 120.3° | 120.1° |
| O3G | PG | O2G | H1 | 127.4° | 60.0° |
| O3G | PG | C3B | H4 | 35.1° | 60.0° |
| O3G | PG | C3B | H5 | 154.4° | 59.9° |
| N1 | C6 | N6 | H18 | 0.0° | 180.0° |
| N1 | C6 | N6 | H19 | 120.0° | 0.0° |
| C6 | N1 | C2 | H20 | 179.9° | 180.0° |
| C6 | N6 | H18 | H19 | 120.0° | 180.0° |
| C3B | PG | O2G | H1 | 116.1° | 60.0° |
| C3B | PG | O3G | H2 | 115.9° | 180.0° |
| PG | C3B | H4 | H5 | 118.8° | 119.9° |
| O2G | PG | O3G | H2 | 127.4° | 59.9° |
| O2G | PG | C3B | H4 | 85.2° | 60.1° |
| O2G | PG | C3B | H5 | 34.0° | 180.0° |
| O2' | C2' | C3' | H12 | 123.8° | 122.6° |
| O2' | C2' | C3' | O3' | 30.9° | 0.1° |
| O2' | C2' | C1' | C8 | 174.1° | 98.5° |
| O2' | C2' | C3' | H10 | 155.2° | 122.6° |
| O2' | C2' | C1' | H14 | 49.5° | 23.8° |
| C2' | C3' | O3' | H10 | 123.4° | 122.7° |
| C3' | C2' | C1' | C8 | 65.8° | 142.8° |
| C2' | C3' | C4' | H9 | 87.5° | 95.0° |
| C2' | C3' | O3' | H11 | 66.5° | 65.3° |
| C3' | C2' | O2' | H13 | 65.7° | 61.5° |
| C3' | C2' | C1' | H14 | 169.7° | 94.9° |
| O3' | C3' | C4' | H9 | 30.9° | 23.7° |
| O3' | C3' | C2' | H12 | 92.9° | 122.7° |
| C8 | C1' | C2' | H12 | 50.3° | 24.2° |
| C1' | C8 | H15 | H16 | 106.1° | 120.0° |
| C1' | C8 | N7 | H17 | 119.1° | 0.0° |
| H7 | C5' | C4' | H9 | 90.5° | 172.8° |
| H8 | C5' | C4' | H9 | 29.3° | 67.2° |
| H9 | C4' | C3' | H10 | 155.0° | 146.3° |
| H10 | C3' | O3' | H11 | 56.9° | 57.4° |
| H10 | C3' | C2' | H12 | 31.4° | 0.1° |
| H12 | C2' | O2' | H13 | 57.1° | 61.2° |
| H12 | C2' | C1' | H14 | 74.3° | 146.5° |
| H14 | C1' | C8 | H15 | 154.5° | 179.1° |
| H14 | C1' | C8 | H16 | 92.8° | 59.1° |
| H15 | C8 | N7 | H17 | 117.2° | 120.0° |
| H16 | C8 | N7 | H17 | 4.5° | 120.0° |
