YGX
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.53Å | 1.51Å | |
| C3' | C4' | sing | 1.53Å | 1.53Å | |
| C2' | C1' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.43Å | 1.44Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C1' | O1' | sing | 1.43Å | 1.44Å | |
| C1' | C7' | sing | 1.53Å | 1.51Å | |
| C5' | C7' | sing | 1.53Å | 1.53Å | |
| C5' | C6' | sing | 1.53Å | 1.53Å | |
| C7' | O7 | sing | 1.43Å | 1.44Å | |
| C6' | O6' | sing | 1.43Å | 1.40Å | |
| C3' | O1 | sing | 1.43Å | 1.46Å | |
| O4' | H1 | sing | 0.97Å | 0.95Å | |
| O7 | HO7 | sing | 0.97Å | 0.95Å | |
| C1' | H1'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| O6' | HO6' | sing | 0.97Å | 0.95Å | |
| C6' | H6'2 | sing | 1.09Å | 1.10Å | |
| C6' | H6'1 | sing | 1.09Å | 1.10Å | |
| C7' | H7' | sing | 1.09Å | 1.10Å | |
| O1' | H2 | sing | 0.97Å | 0.95Å | |
| O1 | H3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2' | C2' | C3' | 112.7° | 109.5° |
| O2' | C2' | C1' | 109.8° | 109.5° |
| O2' | C2' | H2' | 109.3° | 109.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | C4' | 112.2° | 109.4° |
| C3' | C2' | C1' | 108.7° | 109.5° |
| C2' | C3' | O1 | 108.0° | 109.5° |
| C3' | C2' | H2' | 108.3° | 109.5° |
| C2' | C3' | H3' | 108.7° | 109.5° |
| C3' | C4' | O4' | 108.9° | 109.5° |
| C3' | C4' | C5' | 110.9° | 109.5° |
| C4' | C3' | O1 | 110.2° | 109.5° |
| C4' | C3' | H3' | 108.4° | 109.5° |
| C3' | C4' | H4' | 109.1° | 109.5° |
| C2' | C1' | O1' | 112.9° | 109.5° |
| C2' | C1' | C7' | 111.1° | 109.5° |
| C2' | C1' | H1'1 | 106.4° | 109.4° |
| C1' | C2' | H2' | 108.0° | 109.5° |
| O4' | C4' | C5' | 108.3° | 109.5° |
| C4' | O4' | H1 | 109.5° | 114.0° |
| O4' | C4' | H4' | 110.5° | 109.4° |
| C4' | C5' | C7' | 113.7° | 109.4° |
| C4' | C5' | C6' | 110.5° | 109.5° |
| C5' | C4' | H4' | 109.2° | 109.5° |
| C4' | C5' | H5' | 105.7° | 109.5° |
| O1' | C1' | C7' | 111.9° | 109.5° |
| O1' | C1' | H1'1 | 107.5° | 109.5° |
| C1' | O1' | H2 | 109.5° | 114.0° |
| C1' | C7' | C5' | 112.8° | 109.5° |
| C1' | C7' | O7 | 108.8° | 109.5° |
| C7' | C1' | H1'1 | 106.6° | 109.5° |
| C1' | C7' | H7' | 108.3° | 109.5° |
| C7' | C5' | C6' | 114.8° | 109.5° |
| C5' | C7' | O7 | 109.6° | 109.5° |
| C7' | C5' | H5' | 105.7° | 109.5° |
| C5' | C7' | H7' | 108.1° | 109.4° |
| C5' | C6' | O6' | 113.1° | 109.4° |
| C6' | C5' | H5' | 105.6° | 109.5° |
| C5' | C6' | H6'2 | 108.5° | 109.5° |
| C5' | C6' | H6'1 | 108.6° | 109.5° |
| C7' | O7 | HO7 | 109.5° | 114.0° |
| O7 | C7' | H7' | 109.2° | 109.5° |
| C6' | O6' | HO6' | 109.5° | 113.9° |
| O6' | C6' | H6'2 | 108.6° | 109.5° |
| O6' | C6' | H6'1 | 108.6° | 109.5° |
| O1 | C3' | H3' | 109.3° | 109.5° |
| C3' | O1 | H3 | 109.5° | 114.0° |
| H6'2 | C6' | H6'1 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2' | C2' | C3' | C1' | 121.9° | 120.0° |
| O2' | C2' | C3' | H2' | 121.0° | 120.0° |
| O2' | C2' | C3' | C4' | 177.7° | 180.0° |
| O2' | C2' | C1' | H2' | 119.1° | 120.0° |
| O2' | C2' | C1' | O1' | 50.4° | 60.0° |
| O2' | C2' | C1' | C7' | 177.0° | 180.0° |
| O2' | C2' | C3' | O1 | 60.6° | 60.0° |
| O2' | C2' | C1' | H1'1 | 67.3° | 60.0° |
| O2' | C2' | C3' | H3' | 57.9° | 60.1° |
| C2' | C3' | C4' | O1 | 120.4° | 120.0° |
| C2' | C3' | C4' | H3' | 120.0° | 120.0° |
| C3' | C2' | C1' | H2' | 117.3° | 120.0° |
| C2' | C3' | C4' | O4' | 64.3° | 60.0° |
| C2' | C3' | C4' | C5' | 54.8° | 60.0° |
| C3' | C2' | C1' | O1' | 174.1° | 180.0° |
| C3' | C2' | C1' | C7' | 59.3° | 60.0° |
| C2' | C3' | O1 | H3' | 118.0° | 120.0° |
| C3' | C2' | C1' | H1'1 | 56.4° | 60.0° |
| C3' | C2' | O2' | HO2' | 180.0° | 60.0° |
| C2' | C3' | C4' | H4' | 175.1° | 179.9° |
| C2' | C3' | O1 | H3 | 180.0° | 60.1° |
| C4' | C3' | C2' | C1' | 60.3° | 60.0° |
| C3' | C4' | O4' | C5' | 120.6° | 120.0° |
| C3' | C4' | O4' | H4' | 119.8° | 120.0° |
| C3' | C4' | C5' | H4' | 120.2° | 120.0° |
| C3' | C4' | C5' | C7' | 47.8° | 60.0° |
| C3' | C4' | C5' | C6' | 178.5° | 180.0° |
| C4' | C3' | O1 | H3' | 119.0° | 120.0° |
| C3' | C4' | O4' | H1 | 180.0° | 60.0° |
| C4' | C3' | C2' | H2' | 56.7° | 60.0° |
| C3' | C4' | C5' | H5' | 67.7° | 60.0° |
| C4' | C3' | O1 | H3 | 57.0° | 180.0° |
| C2' | C1' | O1' | C7' | 126.3° | 120.0° |
| C2' | C1' | O1' | H1'1 | 117.0° | 120.0° |
| C2' | C1' | C7' | H1'1 | 115.5° | 120.0° |
| C2' | C1' | C7' | C5' | 53.8° | 60.0° |
| C2' | C1' | C7' | O7 | 68.0° | 60.0° |
| C1' | C2' | C3' | O1 | 61.4° | 60.0° |
| C1' | C2' | O2' | HO2' | 58.7° | 180.0° |
| C1' | C2' | C3' | H3' | 179.8° | 180.0° |
| C2' | C1' | C7' | H7' | 173.4° | 180.0° |
| C2' | C1' | O1' | H2 | 180.0° | 60.0° |
| O4' | C4' | C5' | H4' | 120.4° | 120.0° |
| O4' | C4' | C5' | C7' | 71.6° | 60.0° |
| O4' | C4' | C5' | C6' | 59.1° | 59.9° |
| O4' | C4' | C3' | O1 | 175.4° | 180.0° |
| O4' | C4' | C3' | H3' | 55.8° | 60.0° |
| O4' | C4' | C5' | H5' | 172.9° | 180.0° |
| C4' | C5' | C7' | C1' | 48.4° | 60.0° |
| C4' | C5' | C7' | C6' | 128.6° | 120.0° |
| C4' | C5' | C7' | H5' | 115.4° | 120.0° |
| C4' | C5' | C6' | H5' | 113.8° | 120.1° |
| C4' | C5' | C7' | O7 | 73.0° | 60.0° |
| C4' | C5' | C6' | O6' | 163.1° | 175.0° |
| C5' | C4' | C3' | O1 | 65.6° | 60.0° |
| C5' | C4' | O4' | H1 | 59.4° | 180.0° |
| C5' | C4' | C3' | H3' | 174.8° | 180.0° |
| C4' | C5' | C6' | H6'2 | 76.4° | 65.0° |
| C4' | C5' | C6' | H6'1 | 42.5° | 55.1° |
| C4' | C5' | C7' | H7' | 168.1° | 180.0° |
| O1' | C1' | C7' | H1'1 | 117.2° | 120.0° |
| O1' | C1' | C7' | C5' | 179.0° | 180.0° |
| O1' | C1' | C7' | O7 | 59.2° | 60.0° |
| O1' | C1' | C2' | H2' | 68.7° | 60.0° |
| O1' | C1' | C7' | H7' | 59.4° | 60.0° |
| C1' | C7' | C5' | O7 | 121.3° | 120.0° |
| C1' | C7' | C5' | H7' | 119.7° | 120.0° |
| C1' | C7' | C5' | C6' | 177.0° | 180.0° |
| C1' | C7' | O7 | H7' | 118.0° | 120.0° |
| C1' | C7' | O7 | HO7 | 180.0° | 60.0° |
| C7' | C1' | C2' | H2' | 58.0° | 60.0° |
| C1' | C7' | C5' | H5' | 67.1° | 60.0° |
| C7' | C1' | O1' | H2 | 53.7° | 180.0° |
| C7' | C5' | C6' | H5' | 116.0° | 120.0° |
| C5' | C7' | O7 | H7' | 118.3° | 120.0° |
| C7' | C5' | C6' | O6' | 66.7° | 65.0° |
| C5' | C7' | O7 | HO7 | 56.3° | 180.0° |
| C5' | C7' | C1' | H1'1 | 61.7° | 60.0° |
| C7' | C5' | C4' | H4' | 168.0° | 180.0° |
| C7' | C5' | C6' | H6'2 | 53.8° | 55.0° |
| C7' | C5' | C6' | H6'1 | 172.7° | 175.0° |
| C6' | C5' | C7' | O7 | 55.6° | 60.0° |
| C5' | C6' | O6' | H6'2 | 120.5° | 120.0° |
| C5' | C6' | O6' | H6'1 | 120.6° | 119.9° |
| C6' | C5' | C4' | H4' | 61.3° | 60.0° |
| C5' | C6' | O6' | HO6' | 180.0° | 180.0° |
| C5' | C6' | H6'2 | H6'1 | 118.3° | 120.0° |
| C6' | C5' | C7' | H7' | 63.3° | 60.0° |
| O7 | C7' | C1' | H1'1 | 176.5° | 180.0° |
| O7 | C7' | C5' | H5' | 171.6° | 180.0° |
| O6' | C6' | C5' | H5' | 49.3° | 54.9° |
| O6' | C6' | H6'2 | H6'1 | 118.4° | 120.0° |
| O1 | C3' | C2' | H2' | 178.4° | 180.0° |
| O1 | C3' | C4' | H4' | 54.7° | 60.1° |
| H1 | O4' | C4' | H4' | 60.2° | 60.0° |
| HO7 | O7 | C7' | H7' | 62.0° | 60.0° |
| H1'1 | C1' | C2' | H2' | 173.6° | 180.0° |
| H1'1 | C1' | C7' | H7' | 57.9° | 60.0° |
| H1'1 | C1' | O1' | H2 | 63.0° | 59.9° |
| H2' | C2' | O2' | HO2' | 59.6° | 60.0° |
| H2' | C2' | C3' | H3' | 63.2° | 60.0° |
| H3' | C3' | C4' | H4' | 64.9° | 60.0° |
| H3' | C3' | O1 | H3 | 62.0° | 60.0° |
| H4' | C4' | C5' | H5' | 52.5° | 60.0° |
| H5' | C5' | C6' | H6'2 | 169.8° | 175.0° |
| H5' | C5' | C6' | H6'1 | 71.3° | 65.0° |
| H5' | C5' | C7' | H7' | 52.6° | 60.0° |
| HO6' | O6' | C6' | H6'2 | 59.5° | 60.0° |
| HO6' | O6' | C6' | H6'1 | 59.4° | 60.0° |
