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YGM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C01C02doub1.31Å1.31Å
C02C03sing1.51Å1.53Å
C03C04sing1.53Å1.53Å
C10C09doub1.38Å1.38ÅAromatic
C10C05sing1.38Å1.39ÅAromatic
C09C08sing1.38Å1.38ÅAromatic
C04C05sing1.51Å1.53Å
C05C06doub1.38Å1.39ÅAromatic
C08C07doub1.38Å1.39ÅAromatic
C06C07sing1.38Å1.39ÅAromatic
C10H1sing1.08Å1.08Å
C01H2sing1.08Å1.08Å
C01H3sing1.08Å1.08Å
C02H4sing1.08Å1.08Å
C03H5sing1.09Å1.10Å
C03H6sing1.09Å1.10Å
C04H7sing1.09Å1.10Å
C04H8sing1.09Å1.10Å
C06H9sing1.08Å1.08Å
C07H10sing1.08Å1.08Å
C08H11sing1.08Å1.08Å
C09H12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C01C02C03122.2°120.0°
C02C01H2120.0°120.0°
C02C01H3120.0°120.0°
C01C02H4118.9°120.0°
C02C03C04115.4°109.5°
C03C02H4118.9°120.0°
C02C03H5108.0°109.4°
C02C03H6108.0°109.5°
C03C04C05111.2°109.5°
C04C03H5108.0°109.4°
C04C03H6108.0°109.5°
C03C04H7109.0°109.5°
C03C04H8109.0°109.5°
C09C10C05120.2°120.0°
C10C09C08119.5°120.0°
C09C10H1119.9°120.0°
C10C09H12120.2°120.0°
C10C05C04118.7°120.0°
C10C05C06120.3°119.9°
C05C10H1119.9°120.0°
C09C08C07120.8°120.0°
C09C08H11119.6°119.9°
C08C09H12120.3°120.0°
C04C05C06121.0°120.0°
C05C04H7109.0°109.5°
C05C04H8109.0°109.5°
C05C06C07119.4°120.0°
C05C06H9120.3°119.9°
C08C07C06119.8°120.0°
C08C07H10120.1°120.0°
C07C08H11119.6°120.0°
C07C06H9120.3°120.0°
C06C07H10120.1°120.0°
H2C01H3120.0°119.9°
H5C03H6109.5°109.5°
H7C04H8109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C01C02C03H4180.0°180.0°
C01C02C03C0411.7°125.0°
C02C01H2H3180.0°180.0°
C01C02C03H5109.2°115.0°
C01C02C03H6132.6°5.0°
C02C03C04H5120.9°120.0°
C02C03C04H6120.9°120.0°
C02C03C04C0584.1°180.0°
C03C02C01H20.0°180.0°
C03C02C01H3180.0°0.0°
C02C03H5H6117.3°120.0°
C02C03C04H736.1°60.0°
C02C03C04H8155.6°60.0°
C03C04C05C1076.4°90.0°
C03C04C05H7120.3°120.0°
C03C04C05H8120.3°120.1°
C03C04C05C06103.0°90.0°
C04C03C02H4168.3°55.0°
C04C03H5H6117.3°120.0°
C03C04H7H8119.2°120.0°
C09C10C05H1180.0°179.7°
C10C09C08H12180.0°180.0°
C09C10C05C04179.6°180.0°
C09C10C05C060.2°0.1°
C10C09C08C070.1°0.1°
C10C09C08H11179.9°180.0°
C05C10C09C080.0°0.1°
C10C05C04C06179.3°179.9°
C10C05C06C070.3°0.1°
C10C05C04H743.9°30.0°
C10C05C04H8163.4°149.9°
C10C05C06H9179.7°180.0°
C05C10C09H12180.0°179.9°
C09C08C07H11180.0°180.0°
C09C08C07C060.1°0.1°
C08C09C10H1180.0°179.7°
C09C08C07H10179.9°180.0°
C04C05C06C07179.6°180.0°
C04C05C10H10.4°0.3°
C05C04C03H5155.0°60.0°
C05C04C03H636.7°60.0°
C05C04H7H8119.2°120.0°
C04C05C06H90.4°0.1°
C05C06C07C080.1°0.1°
C05C06C07H9180.0°179.9°
C06C05C10H1179.8°179.7°
C06C05C04H7136.8°150.0°
C06C05C04H817.3°30.0°
C05C06C07H10179.9°180.0°
C08C07C06H10180.0°180.0°
C08C07C06H9179.9°180.0°
C07C08C09H12179.8°179.9°
C06C07C08H11179.9°180.0°
H1C10C09H120.0°0.3°
H2C01C02H4180.0°0.0°
H3C01C02H40.0°180.0°
H4C02C03H570.8°65.0°
H4C02C03H647.5°175.0°
H5C03C04H784.8°180.0°
H5C03C04H834.7°60.0°
H6C03C04H7157.0°60.0°
H6C03C04H883.5°180.0°
H9C06C07H100.1°0.1°
H10C07C08H110.0°0.0°
H11C08C09H120.1°0.0°

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PDB entries from 2024-10-09

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