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SummaryGeometryRelated PDB entries

YGL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAKCAGsing1.38Å1.39ÅAromatic
CAKCARdoub1.40Å1.42ÅAromatic
CAGCADdoub1.38Å1.39ÅAromatic
CADCAHsing1.38Å1.39ÅAromatic
CAHCALdoub1.38Å1.40ÅAromatic
CALCARsing1.40Å1.40ÅAromatic
CARCATsing1.48Å1.37Å
CATCAWsing1.47Å1.40ÅAromatic
CATCASdoub1.38Å1.38ÅAromatic
CAWCAUsing1.41Å1.38Å
CAWCAVdoub1.40Å1.38ÅAromatic
CAUOABdoub1.22Å1.24Å
CAUNANsing1.35Å1.41Å
NANCAPsing1.36Å1.42Å
CAPNAAsing1.37Å1.35Å
CAPNAMdoub1.31Å1.35Å
NAMCAVsing1.34Å1.35Å
CAVNAOsing1.37Å1.34ÅAromatic
NAOCASsing1.38Å1.34ÅAromatic
CASCAQsing1.48Å1.39Å
CAQCAIsing1.40Å1.41ÅAromatic
CAQCAJdoub1.40Å1.40ÅAromatic
CAICAEdoub1.38Å1.39ÅAromatic
CAECACsing1.38Å1.40ÅAromatic
CACCAFdoub1.38Å1.39ÅAromatic
CAFCAJsing1.38Å1.41ÅAromatic
CAKHAKsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CADHADsing1.08Å1.08Å
CAHHAHsing1.08Å1.08Å
CALHALsing1.08Å1.08Å
NANHANsing0.97Å1.00Å
NAAHAA1sing0.97Å1.00Å
NAAHAA2sing0.97Å1.00Å
NAOHAOsing0.97Å1.00Å
CAIHAIsing1.08Å1.08Å
CAJHAJsing1.08Å1.08Å
CAEHAEsing1.08Å1.08Å
CACHACsing1.08Å1.08Å
CAFHAFsing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAGCAKCAR122.5°119.9°
CAKCAGCAD119.5°120.1°
CAGCAKHAK118.8°120.1°
CAKCAGHAG120.3°120.0°
CAKCARCAL116.5°119.7°
CAKCARCAT119.1°120.2°
CARCAKHAK118.7°120.1°
CAGCADCAH119.4°120.3°
CADCAGHAG120.3°119.9°
CAGCADHAD120.3°119.8°
CADCAHCAL120.6°120.1°
CAHCADHAD120.3°119.9°
CADCAHHAH119.7°119.9°
CAHCALCAR121.5°119.9°
CALCAHHAH119.7°119.9°
CAHCALHAL119.3°120.1°
CALCARCAT124.3°120.1°
CARCALHAL119.2°120.1°
CARCATCAW131.9°126.9°
CARCATCAS119.5°126.9°
CAWCATCAS108.6°106.2°
CATCAWCAU137.5°134.2°
CATCAWCAV105.7°106.6°
CATCASNAO106.1°108.9°
CATCASCAQ130.6°125.5°
CAUCAWCAV116.7°119.2°
CAWCAUOAB124.6°120.9°
CAWCAUNAN120.1°118.2°
CAWCAVNAM124.2°119.1°
CAWCAVNAO108.1°108.0°
OABCAUNAN115.3°120.9°
CAUNANCAP120.2°120.1°
CAUNANHAN119.9°119.9°
NANCAPNAA121.1°118.9°
NANCAPNAM117.8°122.1°
CAPNANHAN119.9°120.0°
NAACAPNAM121.1°119.0°
CAPNAAHAA1120.0°120.0°
CAPNAAHAA2120.0°120.0°
CAPNAMCAV120.9°121.3°
NAMCAVNAO127.6°133.0°
CAVNAOCAS111.3°110.3°
CAVNAOHAO124.3°124.8°
NAOCASCAQ123.1°125.6°
CASNAOHAO124.3°124.8°
CASCAQCAI119.2°120.2°
CASCAQCAJ126.1°120.2°
CAICAQCAJ114.5°119.7°
CAQCAICAE124.1°119.9°
CAQCAIHAI118.0°120.0°
CAQCAJCAF122.6°119.8°
CAQCAJHAJ118.7°120.1°
CAICAECAC119.5°120.1°
CAECAIHAI118.0°120.1°
CAICAEHAE120.3°120.0°
CAECACCAF118.6°120.4°
CACCAEHAE120.3°119.9°
CAECACHAC120.7°119.8°
CACCAFCAJ120.7°120.1°
CAFCACHAC120.7°119.9°
CACCAFHAF119.7°119.9°
CAFCAJHAJ118.7°120.1°
CAJCAFHAF119.6°119.9°
HAA1NAAHAA2120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAGCAKCARHAK180.0°179.8°
CAKCAGCADHAG180.0°179.9°
CAKCAGCADCAH0.0°0.0°
CAGCAKCARCAL2.2°0.0°
CAGCAKCARCAT175.9°180.0°
CAKCAGCADHAD179.9°180.0°
CARCAKCAGCAD1.4°0.0°
CAKCARCALCAH1.5°0.1°
CAKCARCALCAT177.9°180.0°
CAKCARCATCAW132.0°66.5°
CAKCARCATCAS50.1°113.1°
CARCAKCAGHAG178.6°179.9°
CAKCARCALHAL178.5°180.0°
CAGCADCAHHAD180.0°180.0°
CAGCADCAHCAL0.6°0.0°
CADCAGCAKHAK178.6°179.8°
CAGCADCAHHAH179.3°180.0°
CADCAHCALHAH180.0°180.0°
CADCAHCALCAR0.2°0.1°
CAHCADCAGHAG179.9°179.9°
CADCAHCALHAL179.8°180.0°
CAHCALCARHAL180.0°179.9°
CAHCALCARCAT176.4°180.0°
CALCAHCADHAD179.3°180.0°
CALCARCATCAW50.1°113.5°
CALCARCATCAS127.7°66.8°
CALCARCAKHAK177.8°179.8°
CARCALCAHHAH179.8°180.0°
CARCATCAWCAS178.1°179.7°
CARCATCAWCAU1.3°0.1°
CARCATCAWCAV179.0°180.0°
CARCATCASNAO179.7°179.9°
CARCATCASCAQ4.2°0.0°
CATCARCAKHAK4.1°0.2°
CATCARCALHAL3.6°0.0°
CATCAWCAUCAV179.7°180.0°
CATCAWCAUOAB1.1°0.1°
CATCAWCAUNAN179.3°180.0°
CATCAWCAVNAM178.3°180.0°
CATCAWCAVNAO0.5°0.1°
CAWCATCASNAO1.9°0.4°
CAWCATCASCAQ177.5°179.7°
CASCATCAWCAU179.4°179.8°
CASCATCAWCAV0.9°0.3°
CATCASNAOCAV2.3°0.3°
CATCASNAOCAQ176.0°179.9°
CATCASCAQCAI139.3°133.1°
CATCASCAQCAJ36.0°47.1°
CATCASNAOHAO177.7°179.8°
CAWCAUOABNAN179.7°180.0°
CAWCAUNANCAP1.7°0.0°
CAUCAWCAVNAM1.4°0.1°
CAUCAWCAVNAO179.3°180.0°
CAWCAUNANHAN178.4°180.0°
CAVCAWCAUOAB179.3°180.0°
CAVCAWCAUNAN0.4°0.0°
CAWCAVNAMCAP0.2°0.0°
CAWCAVNAMNAO177.4°179.9°
CAWCAVNAOCAS1.7°0.2°
CAWCAVNAOHAO178.3°180.0°
OABCAUNANCAP178.6°179.9°
OABCAUNANHAN1.4°0.0°
CAUNANCAPHAN180.0°179.9°
CAUNANCAPNAA178.9°180.0°
CAUNANCAPNAM2.8°0.0°
NANCAPNAANAM178.2°179.9°
NANCAPNAMCAV1.9°0.0°
NANCAPNAAHAA1178.2°0.1°
NANCAPNAAHAA21.8°179.9°
NAACAPNAMCAV179.8°179.9°
NAACAPNANHAN1.1°0.1°
CAPNAAHAA1HAA2180.0°180.0°
CAPNAMCAVNAO177.7°179.9°
NAMCAPNANHAN177.2°180.0°
NAMCAPNAAHAA10.0°180.0°
NAMCAPNAAHAA2180.0°0.0°
NAMCAVNAOCAS179.5°179.7°
NAMCAVNAOHAO0.5°0.1°
CAVNAOCASHAO180.0°179.9°
CAVNAOCASCAQ178.3°179.8°
NAOCASCAQCAI35.6°46.8°
NAOCASCAQCAJ149.1°133.0°
CASCAQCAICAJ175.8°179.8°
CASCAQCAICAE178.3°180.0°
CASCAQCAJCAF177.3°179.7°
CAQCASNAOHAO1.8°0.1°
CASCAQCAIHAI1.7°0.0°
CASCAQCAJHAJ2.7°0.0°
CAQCAICAEHAI180.0°180.0°
CAQCAICAECAC3.0°0.0°
CAICAQCAJCAF1.8°0.6°
CAICAQCAJHAJ178.2°179.8°
CAQCAICAEHAE177.0°180.0°
CAJCAQCAICAE2.5°0.2°
CAQCAJCAFCAC1.7°0.6°
CAQCAJCAFHAJ180.0°179.7°
CAJCAQCAIHAI177.5°179.7°
CAQCAJCAFHAF178.3°179.7°
CAICAECACHAE180.0°180.0°
CAICAECACCAF2.7°0.0°
CAICAECACHAC177.3°180.0°
CAECACCAFHAC180.0°180.0°
CAECACCAFCAJ2.1°0.3°
CACCAECAIHAI176.9°180.0°
CAECACCAFHAF177.9°180.0°
CACCAFCAJHAF180.0°179.7°
CACCAFCAJHAJ178.3°179.7°
CAFCACCAEHAE177.3°180.0°
CAJCAFCACHAC177.9°179.7°
HAKCAKCAGHAG1.4°0.3°
HAGCAGCADHAD0.1°0.1°
HADCADCAHHAH0.7°0.0°
HAHCAHCALHAL0.2°0.0°
HAICAICAEHAE3.1°0.0°
HAJCAJCAFHAF1.7°0.0°
HAECAECACHAC2.7°0.0°
HACCACCAFHAF2.1°0.0°

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PDB entries from 2026-02-04

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