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SummaryGeometryRelated PDB entries

YGF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N15C13sing1.37Å1.40Å
C13N14doub1.30Å1.39Å
C13N12sing1.37Å1.44Å
N14C07sing1.47Å1.47Å
C06C07sing1.53Å1.59Å
C06C16sing1.53Å1.57Å
C06N05sing1.47Å1.48Å
N12C08sing1.46Å1.47Å
C07C08sing1.53Å1.58Å
C16O17sing1.43Å1.41Å
N05C04doub1.32Å1.30Å
C08N03sing1.47Å1.45Å
C08C09sing1.53Å1.62Å
C04N03sing1.38Å1.43Å
C04N18sing1.37Å1.43Å
N03C02sing1.46Å1.44Å
O10C09sing1.43Å1.40Å
C09O11sing1.43Å1.40Å
C09C01sing1.56Å1.58Å
C02C01sing1.55Å1.57Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C02H3sing1.09Å1.10Å
C02H4sing1.09Å1.10Å
C06H5sing1.09Å1.10Å
C07H6sing1.09Å1.10Å
C16H7sing1.09Å1.10Å
C16H8sing1.09Å1.10Å
N12H9sing0.97Å1.00Å
N15H10sing0.97Å1.00Å
N15H11sing0.97Å1.00Å
N18H12sing0.97Å1.00Å
N18H13sing0.97Å1.00Å
O10H14sing0.97Å0.95Å
O11H15sing0.97Å0.95Å
O17H16sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N15C13N14125.4°122.9°
N15C13N12125.8°122.9°
C13N15H10120.0°120.0°
C13N15H11120.0°120.0°
N14C13N12108.7°114.2°
C13N14C07110.3°109.8°
C13N12C08112.6°107.9°
C13N12H9123.7°126.1°
N14C07C06105.9°110.4°
N14C07C08107.0°103.9°
N14C07H6110.3°111.1°
C07C06C16108.1°109.0°
C07C06N05117.2°112.1°
C06C07C08115.9°110.5°
C07C06H5107.6°109.0°
C06C07H6108.8°110.3°
C16C06N05107.1°108.9°
C06C16O17111.1°109.5°
C16C06H5107.7°108.9°
C06C16H7109.0°109.4°
C06C16H8109.1°109.5°
C06N05C04123.1°118.0°
N05C06H5108.8°108.8°
N12C08C07101.3°104.0°
N12C08N03105.7°110.8°
N12C08C09111.1°111.9°
C08N12H9123.7°126.0°
C07C08N03115.9°109.1°
C07C08C09122.9°113.5°
C08C07H6108.9°110.4°
O17C16H7109.1°109.5°
O17C16H8109.0°109.5°
C16O17H16109.5°114.0°
N05C04N03124.0°112.8°
N05C04N18121.7°123.6°
N03C08C0999.1°107.4°
C08N03C04123.7°121.3°
C08N03C02110.8°109.1°
C08C09O10108.3°110.9°
C08C09O11108.1°110.9°
C08C09C01103.4°102.1°
N03C04N18114.4°123.6°
C04N03C02125.5°129.5°
C04N18H12120.0°120.0°
C04N18H13120.0°120.0°
N03C02C01103.7°105.7°
N03C02H3110.9°110.2°
N03C02H4110.9°110.3°
O10C09O11110.3°110.8°
O10C09C01114.4°111.0°
C09O10H14109.5°114.0°
O11C09C01111.9°110.9°
C09O11H15109.5°113.9°
C09C01C02104.6°102.1°
C09C01H1110.7°110.9°
C09C01H2110.7°110.9°
C02C01H1110.7°111.0°
C02C01H2110.7°110.9°
C01C02H3110.9°110.2°
C01C02H4110.9°110.2°
H1C01H2109.5°110.8°
H3C02H4109.5°110.2°
H7C16H8109.5°109.4°
H10N15H11120.0°120.0°
H12N18H13120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N15C13N14N12178.3°179.9°
N15C13N14C07178.6°179.4°
N15C13N12C08179.5°178.2°
N15C13N12H90.6°1.7°
C13N15H10H11180.0°179.9°
C13N14C07C06120.5°121.0°
N14C13N12C081.2°1.7°
C13N14C07C083.7°2.5°
C13N14C07H6121.9°116.2°
N14C13N12H9178.9°178.3°
N14C13N15H100.0°0.1°
N14C13N15H11180.0°180.0°
N12C13N14C073.0°0.6°
C13N12C08H9180.0°180.0°
C13N12C08C071.0°3.1°
C13N12C08N03122.3°114.0°
C13N12C08C09131.1°126.1°
N12C13N15H10178.0°180.0°
N12C13N15H112.0°0.1°
N14C07C06C08118.4°114.4°
N14C07C06H6118.5°123.2°
N14C07C06C16124.7°171.4°
N14C07C06N05114.3°67.9°
N14C07C08N122.7°3.3°
N14C07C08H6119.2°119.2°
N14C07C08N03116.6°115.0°
N14C07C08C09121.8°125.2°
N14C07C06H58.6°52.6°
C07C06C16N05127.1°122.6°
C07C06C16H5116.0°118.8°
C07C06N05H5122.2°120.6°
C06C07C08N12115.1°121.7°
C06C07C08H6123.0°122.4°
C07C06C16O1759.7°175.0°
C07C06N05C044.8°50.4°
C06C07C08N031.2°3.4°
C06C07C08C09120.4°116.4°
C07C06C16H760.5°65.0°
C07C06C16H8180.0°55.0°
C16C06N05H5116.2°118.7°
C16C06C07C08116.9°74.2°
C06C16O17H7120.2°120.0°
C06C16O17H8120.2°120.1°
C16C06N05C04116.7°70.3°
C16C06C07H66.1°48.2°
C06C16H7H8119.2°120.0°
C06C16O17H16180.0°180.0°
N05C06C07C084.1°46.5°
N05C06C16O1767.4°62.3°
C06N05C04N032.4°4.4°
C06N05C04N18178.5°175.6°
N05C06C07H6127.1°168.9°
N05C06C16H7172.4°57.7°
N05C06C16H852.9°177.7°
N12C08C07N03113.8°118.3°
N12C08C07C09124.6°121.9°
N12C08N03C09115.1°122.6°
N12C08N03C04109.9°68.1°
N12C08N03C0270.5°114.8°
N12C08C09O1043.3°24.1°
N12C08C09O11162.8°147.7°
N12C08C09C0178.5°94.1°
N12C08C07H6121.9°115.9°
C07C08N03C09133.6°123.5°
C07C08N03C041.4°45.8°
C07C08N03C02178.2°131.3°
C07C08C09O1076.8°93.2°
C07C08C09O1142.7°30.4°
C07C08C09C01161.4°148.5°
C08C07C06H5127.0°167.0°
C07C08N12H9178.9°176.9°
O17C16C06H5175.7°56.2°
O17C16H7H8119.2°120.0°
N05C04N03C081.0°47.2°
N05C04N03N18179.2°180.0°
N05C04N03C02178.5°129.3°
C04N05C06H5127.1°171.1°
N05C04N18H120.0°180.0°
N05C04N18H13180.0°0.0°
C08N03C04C02179.5°176.4°
C08N03C04N18178.2°132.8°
N03C08C09O10154.1°146.0°
N03C08C09O1186.4°90.4°
N03C08C09C0132.3°27.8°
C08N03C02C0138.1°15.9°
C08N03C02H3157.1°135.0°
C08N03C02H481.0°103.2°
N03C08C07H6124.3°125.8°
N03C08N12H957.7°65.9°
C09C08N03C04135.0°169.3°
C09C08N03C0244.6°7.8°
C08C09O10O11118.1°123.6°
C08C09O10C01114.8°112.7°
C08C09O11C01113.2°112.7°
C08C09C01C0211.9°36.0°
C08C09C01H1107.3°154.3°
C08C09C01H2131.2°82.2°
C09C08C07H62.7°6.0°
C09C08N12H948.9°54.0°
C08C09O10H14180.0°180.0°
C08C09O11H15180.0°180.0°
C04N03C02C01141.5°167.3°
C04N03C02H322.5°48.2°
C04N03C02H499.4°73.6°
N03C04N18H12179.2°0.0°
N03C04N18H130.8°180.0°
N18C04N03C022.3°50.7°
C04N18H12H13179.9°180.0°
N03C02C01C0913.0°32.5°
N03C02C01H3119.1°119.1°
N03C02C01H4119.1°119.1°
N03C02C01H1132.2°150.7°
N03C02C01H2106.2°85.7°
N03C02H3H4122.7°121.9°
O10C09O11C01128.6°123.7°
O10C09C01C02129.5°154.2°
O10C09C01H110.3°87.5°
O10C09C01H2111.3°36.0°
O10C09O11H1561.9°56.4°
O11C09C01C02104.1°82.1°
O11C09C01H1136.7°36.1°
O11C09C01H215.1°159.6°
O11C09O10H1461.9°56.4°
C09C01C02H1119.2°118.2°
C09C01C02H2119.2°118.2°
C09C01H1H2122.3°123.6°
C09C01C02H3132.1°151.6°
C09C01C02H4106.1°86.6°
C01C09O10H1465.3°67.3°
C01C09O11H1566.7°67.3°
C02C01H1H2122.2°123.7°
C01C02H3H4122.6°121.8°
H1C01C02H3108.7°90.2°
H1C01C02H413.2°31.6°
H2C01C02H312.9°33.4°
H2C01C02H4134.7°155.2°
H5C06C07H6110.0°70.6°
H5C06C16H755.4°176.2°
H5C06C16H864.1°63.8°
H7C16O17H1659.8°60.0°
H8C16O17H1659.7°60.0°

250059

PDB entries from 2026-03-04

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