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SummaryGeometryRelated PDB entries

YG9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O02C01sing1.43Å1.39Å
C03O02sing1.36Å1.40Å
C04C03doub1.39Å1.38ÅAromatic
C05C04sing1.38Å1.40ÅAromatic
C06C05doub1.38Å1.39ÅAromatic
C08C07sing1.53Å1.54Å
C09C08sing1.53Å1.53Å
C10C09sing1.53Å1.57Å
N11C09sing1.47Å1.43Å
C12N11sing1.35Å1.47Å
O13C12doub1.21Å1.19Å
N14C12sing1.34Å1.48Å
C15N14sing1.35Å1.45Å
O16C15doub1.21Å1.19Å
C07C06sing1.51Å1.52Å
C17C06sing1.38Å1.37ÅAromatic
C18C17doub1.38Å1.38ÅAromatic
C03C18sing1.39Å1.39ÅAromatic
C09C15sing1.52Å1.53Å
C10H102sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H103sing1.09Å1.10Å
C17H171sing1.08Å1.08Å
C01H012sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C04H041sing1.08Å1.08Å
C05H051sing1.08Å1.08Å
C07H072sing1.09Å1.10Å
C07H071sing1.09Å1.10Å
C08H082sing1.09Å1.10Å
C08H081sing1.09Å1.10Å
C18H181sing1.08Å1.08Å
N11H111sing0.97Å1.00Å
N14H141sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01O02C03118.6°117.0°
O02C01H012109.5°109.5°
O02C01H011109.5°109.5°
O02C01H013109.4°109.5°
O02C03C04119.6°120.1°
O02C03C18122.0°120.0°
C03C04C05119.9°119.9°
C04C03C18118.4°119.9°
C03C04H041120.0°120.0°
C04C05C06120.7°120.0°
C05C04H041120.1°120.0°
C04C05H051119.6°120.0°
C05C06C07120.8°119.9°
C05C06C17119.7°120.2°
C06C05H051119.7°120.0°
C07C08C09114.6°109.5°
C08C07C06111.2°109.5°
C08C07H072109.0°109.5°
C08C07H071109.0°109.5°
C07C08H082108.2°109.5°
C07C08H081108.2°109.5°
C08C09C10109.9°110.5°
C08C09N11108.1°110.7°
C08C09C15113.4°110.6°
C09C08H082108.2°109.5°
C09C08H081108.2°109.5°
C10C09N11105.5°110.6°
C10C09C15112.2°110.6°
C09C10H102109.5°109.5°
C09C10H101109.5°109.5°
C09C10H103109.4°109.5°
C09N11C12109.3°106.6°
N11C09C15107.2°103.6°
C09N11H111125.4°126.7°
N11C12O13124.4°123.7°
N11C12N14108.0°112.4°
C12N11H111125.4°126.7°
O13C12N14127.6°123.8°
C12N14C15108.1°111.7°
C12N14H141125.9°124.1°
N14C15O16124.0°127.1°
N14C15C09107.3°105.7°
C15N14H141126.0°124.2°
O16C15C09128.6°127.2°
C07C06C17119.4°119.9°
C06C07H072109.0°109.5°
C06C07H071109.0°109.5°
C06C17C18119.4°120.0°
C06C17H171120.3°120.0°
C17C18C03121.9°119.9°
C18C17H171120.3°119.9°
C17C18H181119.0°120.0°
C03C18H181119.1°120.1°
H102C10H101109.4°109.5°
H102C10H103109.5°109.5°
H101C10H103109.5°109.4°
H012C01H011109.5°109.4°
H012C01H013109.5°109.5°
H011C01H013109.5°109.5°
H072C07H071109.5°109.4°
H082C08H081109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01O02C03C04135.7°0.0°
C01O02C03C1846.6°180.0°
O02C01H012H011120.0°120.0°
O02C01H012H013120.0°120.0°
O02C01H011H013120.0°120.0°
O02C03C04C18177.8°179.9°
O02C03C04C05179.2°179.7°
O02C03C18C17179.9°180.0°
C03O02C01H012180.0°59.9°
C03O02C01H01160.0°60.0°
C03O02C01H01360.0°180.0°
O02C03C04H0410.8°0.0°
O02C03C18H1810.1°0.0°
C03C04C05H041180.0°179.7°
C03C04C05C060.8°0.6°
C04C03C18C172.2°0.1°
C03C04C05H051179.2°179.9°
C04C03C18H181177.8°179.9°
C04C05C06H051180.0°179.5°
C04C05C06C07177.9°179.4°
C04C05C06C171.0°0.5°
C05C04C03C181.4°0.3°
C05C06C07C0852.2°90.0°
C05C06C07C17176.9°180.0°
C05C06C17C181.7°0.3°
C05C06C17H171178.3°180.0°
C06C05C04H041179.2°179.8°
C05C06C07H07268.0°30.0°
C05C06C07H071172.5°150.0°
C07C08C09H082120.7°120.0°
C07C08C09H081120.8°120.0°
C07C08C09C10170.7°59.3°
C07C08C09N1156.0°63.6°
C08C07C06H072120.2°120.0°
C08C07C06H071120.2°120.0°
C08C07C06C17124.7°90.0°
C07C08C09C1562.8°177.9°
C08C07H072H071119.2°120.0°
C07C08H082H081117.7°120.0°
C08C09C10N11116.4°123.0°
C08C09C10C15127.2°122.8°
C08C09N11C15122.7°118.6°
C08C09N11C12124.4°118.6°
C08C09C15N14121.9°118.7°
C08C09C15O1661.0°61.0°
C09C08C07C06176.8°180.0°
C08C09C10H102180.0°60.0°
C08C09C10H10160.0°180.0°
C08C09C10H10360.0°60.0°
C09C08C07H07263.0°60.0°
C09C08C07H07156.5°60.0°
C09C08H082H081117.6°120.0°
C08C09N11H11155.6°61.4°
C10C09N11C15119.8°118.5°
C10C09N11C12118.1°118.5°
C10C09C15N14112.9°118.5°
C10C09C15O1664.3°61.8°
C09C10H102H101120.0°120.0°
C09C10H102H103120.0°120.0°
C09C10H101H103120.0°120.0°
C10C09C08H08268.6°179.3°
C10C09C08H08149.9°60.7°
C10C09N11H11161.9°61.4°
C09N11C12H111180.0°179.9°
C09N11C12O13178.2°180.0°
C09N11C12N140.2°0.0°
N11C09C15N142.6°0.0°
N11C09C15O16179.7°179.7°
N11C09C10H10263.6°63.0°
N11C09C10H101176.4°57.0°
N11C09C10H10356.4°177.0°
N11C09C08H082176.7°56.4°
N11C09C08H08164.8°176.3°
N11C12O13N14178.1°180.0°
N11C12N14C151.4°0.0°
C12N11C09C151.7°0.0°
N11C12N14H141178.6°180.0°
O13C12N14C15179.8°180.0°
O13C12N11H1111.8°0.1°
O13C12N14H1410.2°0.0°
C12N14C15H141180.0°179.9°
C12N14C15O16179.8°179.7°
C12N14C15C092.4°0.0°
N14C12N11H111179.8°180.0°
N14C15O16C09176.7°179.6°
O16C15N14H1410.2°0.3°
C07C06C17C18178.7°179.7°
C07C06C17H1711.3°0.0°
C07C06C05H0512.1°0.1°
C06C07H072H071119.2°120.0°
C06C07C08H08262.5°60.0°
C06C07C08H08156.0°60.0°
C06C17C18H171180.0°179.7°
C06C17C18C032.3°0.0°
C17C06C05H051179.0°179.9°
C17C06C07H072115.1°150.0°
C17C06C07H0714.5°30.0°
C06C17C18H181177.7°180.0°
C17C18C03H181180.0°180.0°
C03C18C17H171177.7°179.8°
C18C03C04H041178.6°180.0°
C15C09C10H10252.8°177.2°
C15C09C10H10167.2°57.1°
C15C09C10H103172.8°62.8°
C15C09C08H08257.9°57.9°
C15C09C08H081176.4°62.1°
C15C09N11H111178.3°179.9°
C09C15N14H141177.6°180.0°
H102C10H101H103120.0°120.0°
H171C17C18H1812.3°0.2°
H012C01H011H013120.0°120.0°
H041C04C05H0510.8°0.2°
H072C07C08H08257.8°NaN°
H072C07C08H081176.3°60.0°
H071C07C08H082177.2°60.0°
H071C07C08H08164.2°180.0°

226262

PDB entries from 2024-10-16

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