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YG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.36Å1.36ÅAromatic
N1C6sing1.35Å1.42Å
N1C12sing1.38Å1.38ÅAromatic
N2C2doub1.32Å1.38ÅAromatic
N2C11sing1.34Å1.39ÅAromatic
C2N3sing1.38Å1.36Å
N3C3sing1.46Å1.50Å
N3C4sing1.37Å1.38Å
C3H31sing1.09Å1.12Å
C3H32sing1.09Å1.12Å
C3H33sing1.09Å1.11Å
C4C5doub1.39Å1.39ÅAromatic
C4N9sing1.36Å1.39ÅAromatic
C5C6sing1.42Å1.44Å
C5N7sing1.36Å1.39ÅAromatic
C6O6doub1.22Å1.24Å
N7C8doub1.30Å1.31ÅAromatic
C8N9sing1.36Å1.38ÅAromatic
C8H8sing1.08Å1.10Å
N9C1'sing1.46Å1.46Å
C10C11sing1.51Å1.51Å
C10H101sing1.09Å1.11Å
C10H102sing1.09Å1.11Å
C10H103sing1.09Å1.11Å
C11C12doub1.34Å1.39ÅAromatic
C12C13sing1.51Å1.51Å
C13C14sing1.53Å1.51Å
C13H131sing1.09Å1.12Å
C13H132sing1.09Å1.11Å
C14C15sing1.53Å1.54Å
C14H141sing1.09Å1.11Å
C14H142sing1.09Å1.11Å
C15C16sing1.51Å1.53Å
C15N20sing1.47Å1.46Å
C15H15sing1.09Å1.12Å
C16O17doub1.21Å1.23Å
C16O18sing1.34Å1.35Å
O18C19sing1.45Å1.45Å
C19H191sing1.09Å1.11Å
C19H192sing1.09Å1.11Å
C19H193sing1.09Å1.12Å
N20C21sing1.35Å1.33Å
N20HN2sing0.97Å1.02Å
C21O22doub1.21Å1.24Å
C21O23sing1.35Å1.36Å
O23C24sing1.45Å1.45Å
C24H241sing1.09Å1.11Å
C24H242sing1.09Å1.11Å
C24H243sing1.09Å1.11Å
C1'C2'sing1.54Å1.53Å
C1'O4'sing1.44Å1.42Å
C1'H1'sing1.09Å1.12Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.51Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C4'O4'sing1.44Å1.45Å
C4'C5'sing1.53Å1.50Å
C4'H4'sing1.09Å1.11Å
C5'O5'sing1.43Å1.42Å
C5'H5'sing1.09Å1.12Å
C5'H5''sing1.09Å1.11Å
O5'Psing1.61Å1.59Å
POP1doub1.48Å1.49Å
POP2sing1.61Å1.49Å
POP3sing1.61Å1.61Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6124.9°120.9°
C2N1C12103.5°107.1°
N1C2N2113.1°108.1°
N1C2N3124.5°120.6°
C6N1C12131.6°131.9°
N1C6C5111.7°119.6°
N1C6O6119.7°120.2°
N1C12C11111.3°106.8°
N1C12C13125.1°126.6°
C2N2C11105.6°109.4°
N2C2N3122.4°131.3°
N2C11C10126.7°125.8°
N2C11C12106.6°108.5°
C2N3C3122.6°120.0°
C2N3C4111.8°120.0°
C3N3C4125.6°120.0°
N3C3H31122.5°109.5°
N3C3H32107.5°109.4°
N3C3H33107.5°109.5°
N3C4C5128.0°119.7°
N3C4N9126.9°133.9°
H31C3H32107.6°109.5°
H31C3H33107.6°109.5°
H32C3H33102.3°109.4°
C5C4N9105.1°106.4°
C4C5C6119.1°119.2°
C4C5N7110.8°107.3°
C4N9C8106.3°107.5°
C4N9C1'127.1°126.2°
C6C5N7130.2°133.6°
C5C6O6128.6°120.2°
C5N7C8104.6°109.1°
N7C8N9113.2°109.6°
N7C8H8121.2°125.2°
N9C8H8125.6°125.2°
C8N9C1'126.6°126.2°
N9C1'C2'113.7°110.4°
N9C1'O4'108.2°110.4°
N9C1'H1'106.7°110.4°
C11C10H101126.6°109.5°
C11C10H102106.1°109.5°
C11C10H103106.1°109.5°
C10C11C12126.8°125.7°
H101C10H102106.3°109.5°
H101C10H103106.2°109.5°
H102C10H103103.3°109.5°
C11C12C13123.5°126.6°
C12C13C14111.7°109.5°
C12C13H131111.4°109.5°
C12C13H132111.4°109.5°
C14C13H131111.3°109.5°
C14C13H132111.4°109.4°
C13C14C15116.1°109.5°
C13C14H141109.8°109.4°
C13C14H142109.8°109.4°
H131C13H13299.0°109.4°
C15C14H141109.8°109.5°
C15C14H142109.8°109.5°
C14C15C16111.1°109.5°
C14C15N20110.7°109.4°
C14C15H15108.1°109.5°
H141C14H142100.4°109.5°
C16C15N20111.1°109.5°
C16C15H15107.7°109.5°
C15C16O17120.4°120.0°
C15C16O18117.6°120.0°
N20C15H15108.0°109.5°
C15N20C21123.7°120.0°
C15N20HN2123.0°120.0°
O17C16O18122.0°120.0°
C16O18C19122.5°120.0°
O18C19H191122.5°109.5°
O18C19H192107.5°109.5°
O18C19H193107.5°109.5°
H191C19H192107.7°109.4°
H191C19H193107.6°109.5°
H192C19H193102.3°109.4°
C21N20HN2113.2°120.0°
N20C21O22121.9°120.0°
N20C21O23118.5°120.0°
O22C21O23119.7°120.0°
C21O23C24123.0°120.0°
O23C24H241123.1°109.5°
O23C24H242107.4°109.5°
O23C24H243107.4°109.5°
H241C24H242107.4°109.5°
H241C24H243107.4°109.5°
H242C24H243102.4°109.5°
C2'C1'O4'107.0°104.9°
C2'C1'H1'108.0°110.4°
C1'C2'O2'110.6°110.8°
C1'C2'C3'101.7°104.0°
C1'C2'H2'115.0°110.4°
O4'C1'H1'113.4°110.3°
C1'O4'C4'109.4°105.2°
O2'C2'C3'113.0°110.5°
O2'C2'H2'104.1°110.5°
C2'O2'HO2'110.6°106.8°
C3'C2'H2'112.7°110.5°
C2'C3'O3'111.2°110.5°
C2'C3'C4'101.6°104.1°
C2'C3'H3'113.9°110.6°
O3'C3'C4'110.7°110.5°
O3'C3'H3'105.3°110.5°
C3'O3'HO3'111.2°106.8°
C4'C3'H3'114.3°110.5°
C3'C4'O4'102.8°104.8°
C3'C4'C5'114.9°110.5°
C3'C4'H4'110.5°110.4°
O4'C4'C5'109.5°110.3°
O4'C4'H4'115.8°110.4°
C5'C4'H4'103.8°110.3°
C4'C5'O5'110.0°109.5°
C4'C5'H5'112.0°109.5°
C4'C5'H5''112.0°109.5°
O5'C5'H5'112.0°109.5°
O5'C5'H5''112.0°109.5°
C5'O5'P120.4°106.8°
H5'C5'H5''98.4°109.4°
O5'POP1107.8°109.4°
O5'POP2108.6°109.5°
O5'POP3103.9°109.5°
OP1POP2119.8°109.4°
OP1POP3108.2°109.6°
OP2POP3107.5°109.5°
POP2HOP2108.6°106.8°
POP3HOP3103.9°106.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C12179.5°180.0°
N1C2N2N3179.7°180.0°
N1C2N2C110.2°0.3°
N1C2N3C3179.8°180.0°
N1C2N3C40.0°0.1°
C2N1C6C50.3°0.0°
C2N1C6O6179.3°180.0°
C2N1C12C110.1°0.2°
C2N1C12C13178.9°180.0°
C6N1C2N2179.9°180.0°
C6N1C2N30.2°0.0°
N1C6C5C40.3°0.0°
N1C6C5O6179.6°179.9°
N1C6C5N7179.3°180.0°
C6N1C12C11179.7°179.8°
C6N1C12C131.5°0.0°
C12N1C2N20.2°0.0°
N1C12C11N20.0°0.4°
C12N1C2N3179.5°180.0°
C12N1C6C5179.2°179.9°
C12N1C6O61.1°0.0°
N1C12C11C10179.7°180.0°
N1C12C11C13178.8°179.8°
N1C12C13C14110.0°90.0°
N1C12C13H13115.2°30.1°
N1C12C13H132124.7°150.0°
N2C2N3C30.1°0.0°
N2C2N3C4179.7°180.0°
C2N2C11C10179.8°180.0°
C2N2C11C120.2°0.4°
C11N2C2N3179.5°179.7°
N2C11C10C12179.6°179.6°
N2C11C10H101180.0°90.0°
N2C11C10H10254.7°150.0°
N2C11C10H10354.8°30.0°
N2C11C12C13178.8°179.8°
C2N3C3C4179.8°179.9°
C2N3C3H31180.0°0.0°
C2N3C3H3254.8°120.1°
C2N3C3H3354.8°120.0°
C2N3C4C50.1°0.1°
C2N3C4N9178.9°180.0°
N3C3H31H32125.2°120.0°
N3C3H31H33125.2°120.0°
N3C3H32H33113.1°120.0°
C3N3C4C5179.7°180.0°
C3N3C4N90.8°0.1°
C4N3C3H310.3°180.0°
C4N3C3H32125.5°60.0°
C4N3C3H33125.0°59.9°
N3C4C5N9179.1°179.9°
N3C4C5C60.2°0.0°
N3C4C5N7179.5°180.0°
N3C4N9C8179.6°179.9°
N3C4N9C1'0.4°0.1°
H31C3H32H33113.1°120.0°
C4C5C6N7179.6°180.0°
C4C5C6O6179.3°179.9°
C4C5N7C80.1°0.0°
C5C4N9C80.6°0.0°
C5C4N9C1'178.7°180.0°
N9C4C5C6179.3°180.0°
N9C4C5N70.4°0.1°
C4N9C8N70.5°0.0°
C4N9C8C1'179.3°179.9°
C4N9C8H8179.5°180.0°
C4N9C1'C2'67.9°91.6°
C4N9C1'O4'173.4°152.9°
C4N9C1'H1'51.0°30.7°
C6C5N7C8179.5°180.0°
N7C5C6O61.1°0.0°
C5N7C8N90.3°0.0°
C5N7C8H8179.7°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'178.7°180.0°
C8N9C1'C2'111.3°88.5°
C8N9C1'O4'7.4°27.0°
C8N9C1'H1'129.8°149.2°
H8C8N9C1'1.2°0.1°
N9C1'C2'O4'119.4°118.9°
N9C1'C2'H1'118.2°122.3°
N9C1'O4'H1'118.2°122.2°
N9C1'C2'O2'140.7°98.5°
N9C1'C2'C3'99.1°142.7°
N9C1'C2'H2'23.1°24.1°
N9C1'O4'C4'128.5°159.4°
C11C10H101H102125.3°120.0°
C11C10H101H103125.2°120.0°
C11C10H102H103111.5°120.0°
C10C11C12C130.9°0.2°
H101C10H102H103111.5°120.0°
H101C10C11C120.3°90.4°
H102C10C11C12125.7°29.6°
H103C10C11C12124.8°149.6°
C11C12C13C1468.6°90.3°
C11C12C13H131166.2°149.7°
C11C12C13H13256.7°29.7°
C12C13C14H131125.2°120.0°
C12C13C14H132125.3°120.0°
C12C13H131H132117.3°120.0°
C12C13C14C15124.4°180.0°
C12C13C14H1410.9°60.0°
C12C13C14H142110.3°60.0°
C14C13H131H132117.3°119.9°
C13C14C15H141125.2°119.9°
C13C14C15H142125.2°120.0°
C13C14H141H142115.6°119.9°
C13C14C15C16149.7°180.0°
C13C14C15N2086.3°60.0°
C13C14C15H1531.9°60.0°
H131C13C14C15110.4°60.0°
H131C13C14H141124.3°180.0°
H131C13C14H14214.9°60.1°
H132C13C14C150.9°59.9°
H132C13C14H141126.2°60.1°
H132C13C14H142124.4°180.0°
C15C14H141H142115.6°120.1°
C14C15C16N20123.8°119.9°
C14C15C16H15118.1°120.1°
C14C15N20H15118.1°120.1°
C14C15C16O1743.6°90.1°
C14C15C16O18135.1°90.0°
C14C15N20C21130.7°150.1°
C14C15N20HN249.2°30.0°
H141C14C15C1685.0°60.1°
H141C14C15N2039.0°179.9°
H141C14C15H15157.1°59.9°
H142C14C15C1624.5°60.0°
H142C14C15N20148.5°60.0°
H142C14C15H1593.4°180.0°
C16C15N20H15117.9°120.0°
C15C16O17O18178.6°180.0°
C15C16O18C19112.0°180.0°
C16C15N20C21105.3°90.0°
C16C15N20HN274.7°89.9°
N20C15C16O17167.3°150.0°
N20C15C16O1811.3°30.0°
C15N20C21HN2180.0°179.9°
C15N20C21O225.4°0.0°
C15N20C21O23175.2°180.0°
H15C15C16O1774.6°30.0°
H15C15C16O18106.8°150.0°
H15C15N20C2112.6°30.0°
H15C15N20HN2167.4°150.1°
O17C16O18C1969.4°0.0°
C16O18C19H191180.0°180.0°
C16O18C19H19254.7°60.0°
C16O18C19H19354.7°60.0°
O18C19H191H192125.3°120.0°
O18C19H191H193125.2°120.0°
O18C19H192H193113.1°120.0°
H191C19H192H193113.2°120.0°
N20C21O22O23179.4°180.0°
N20C21O23C24172.2°180.0°
HN2N20C21O22174.5°179.9°
HN2N20C21O234.9°0.1°
O22C21O23C247.2°0.0°
C21O23C24H241180.0°180.0°
C21O23C24H24254.7°60.0°
C21O23C24H24354.7°60.0°
O23C24H241H242125.3°120.0°
O23C24H241H243125.2°120.0°
O23C24H242H243112.9°120.0°
H241C24H242H243112.9°120.0°
C2'C1'O4'H1'118.9°118.9°
C1'C2'O2'C3'113.2°114.7°
C1'C2'O2'H2'124.1°122.7°
C1'C2'C3'H2'123.7°118.5°
C1'C2'O2'HO2'180.0°176.2°
C1'C2'C3'O3'155.0°118.8°
C1'C2'C3'C4'37.2°0.2°
C1'C2'C3'H3'86.2°118.6°
C2'C1'O4'C4'5.7°40.5°
O4'C1'C2'O2'99.9°142.6°
O4'C1'C2'C3'20.4°23.8°
O4'C1'C2'H2'142.5°94.7°
C1'O4'C4'C3'29.6°40.6°
C1'O4'C4'C5'152.2°159.4°
C1'O4'C4'H4'90.9°78.3°
H1'C1'C2'O2'22.5°23.8°
H1'C1'C2'C3'142.8°95.0°
H1'C1'C2'H2'95.1°146.4°
H1'C1'O4'C4'113.3°78.4°
O2'C2'C3'H2'117.7°122.6°
O2'C2'C3'O3'36.4°0.1°
O2'C2'C3'C4'81.4°118.7°
O2'C2'C3'H3'155.2°122.5°
C3'C2'O2'HO2'66.8°61.5°
C2'C3'O3'C4'112.1°114.7°
C2'C3'O3'H3'123.8°122.7°
C2'C3'C4'H3'123.1°118.8°
C2'C3'O3'HO3'179.9°65.3°
C2'C3'C4'O4'41.3°24.1°
C2'C3'C4'C5'160.2°142.9°
C2'C3'C4'H4'82.8°94.8°
H2'C2'O2'HO2'55.9°61.2°
H2'C2'C3'O3'81.3°122.7°
H2'C2'C3'C4'160.9°118.7°
H2'C2'C3'H3'37.5°0.0°
O3'C3'C4'H3'118.7°122.6°
O3'C3'C4'O4'159.5°142.8°
O3'C3'C4'C5'81.6°98.4°
O3'C3'C4'H4'35.4°23.9°
C4'C3'O3'HO3'67.8°180.0°
C3'C4'O4'C5'122.6°118.9°
C3'C4'O4'H4'120.5°118.9°
C3'C4'C5'H4'120.8°122.3°
C3'C4'C5'O5'64.3°176.9°
C3'C4'C5'H5'170.4°63.1°
C3'C4'C5'H5''61.0°56.8°
H3'C3'O3'HO3'56.2°57.4°
H3'C3'C4'O4'81.8°94.6°
H3'C3'C4'C5'37.1°24.2°
H3'C3'C4'H4'154.1°146.5°
O4'C4'C5'H4'124.2°122.3°
O4'C4'C5'O5'50.7°61.5°
O4'C4'C5'H5'74.5°178.5°
O4'C4'C5'H5''176.0°58.5°
C4'C5'O5'H5'125.3°120.0°
C4'C5'O5'H5''125.3°120.0°
C4'C5'H5'H5''117.9°120.0°
C4'C5'O5'P168.2°180.0°
H4'C4'C5'O5'174.9°60.8°
H4'C4'C5'H5'49.7°59.2°
H4'C4'C5'H5''59.8°179.2°
O5'C5'H5'H5''117.9°120.0°
C5'O5'POP1179.6°60.1°
C5'O5'POP248.4°180.0°
C5'O5'POP365.8°60.0°
H5'C5'O5'P42.9°59.9°
H5''C5'O5'P66.5°60.0°
O5'POP1OP2124.7°119.9°
O5'POP1OP3111.7°120.1°
O5'POP2OP3111.8°120.0°
O5'POP2HOP2180.0°180.0°
O5'POP3HOP3180.0°60.0°
OP1POP2OP3123.9°120.1°
OP1POP2HOP255.7°60.1°
OP1POP3HOP365.7°180.0°
OP2POP3HOP365.0°60.0°
OP3POP2HOP268.2°60.0°

223790

PDB entries from 2024-08-14

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