YFZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.23Å | |
| C | CA | sing | 1.51Å | 1.51Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CB | O2 | sing | 1.43Å | 1.42Å | |
| CB | CG | sing | 1.53Å | 1.52Å | |
| CG | CD | sing | 1.53Å | 1.52Å | |
| O3 | CD | sing | 1.43Å | 1.43Å | |
| CD | CE | sing | 1.53Å | 1.54Å | |
| N | CE | sing | 1.47Å | 1.47Å | |
| CE | CZ | sing | 1.53Å | 1.51Å | |
| CZ | OH | sing | 1.43Å | 1.42Å | |
| CA | HA1 | sing | 1.09Å | 1.10Å | |
| CA | HA2 | sing | 1.09Å | 1.10Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CG | HG1 | sing | 1.09Å | 1.10Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CZ | HZ1 | sing | 1.09Å | 1.10Å | |
| CZ | HZ2 | sing | 1.09Å | 1.10Å | |
| CD | HD | sing | 1.09Å | 1.10Å | |
| CE | HE | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| OH | H1 | sing | 0.97Å | 0.95Å | |
| C | OXT | sing | 1.34Å | 395.53Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 119.6° | 120.0° |
| O | C | OXT | 41.7° | 120.0° |
| C | CA | CB | 110.9° | 109.5° |
| C | CA | HA1 | 109.1° | 109.5° |
| C | CA | HA2 | 109.1° | 109.5° |
| CA | C | OXT | 151.9° | 120.0° |
| CA | CB | O2 | 107.8° | 109.5° |
| CA | CB | CG | 113.3° | 109.5° |
| CB | CA | HA1 | 109.1° | 109.5° |
| CB | CA | HA2 | 109.1° | 109.4° |
| CA | CB | HB | 108.6° | 109.5° |
| O2 | CB | CG | 108.8° | 109.4° |
| O2 | CB | HB | 109.8° | 109.4° |
| CB | O2 | HO2 | 109.5° | 114.0° |
| CB | CG | CD | 113.5° | 109.5° |
| CG | CB | HB | 108.6° | 109.5° |
| CB | CG | HG1 | 108.4° | 109.5° |
| CB | CG | HG2 | 108.4° | 109.5° |
| CG | CD | O3 | 108.8° | 109.5° |
| CG | CD | CE | 112.7° | 109.5° |
| CD | CG | HG1 | 108.5° | 109.5° |
| CD | CG | HG2 | 108.5° | 109.5° |
| CG | CD | HD | 108.2° | 109.5° |
| O3 | CD | CE | 109.7° | 109.5° |
| O3 | CD | HD | 109.5° | 109.5° |
| CD | O3 | HO3 | 109.5° | 114.0° |
| CD | CE | N | 110.5° | 109.5° |
| CD | CE | CZ | 110.2° | 109.5° |
| CE | CD | HD | 108.0° | 109.5° |
| CD | CE | HE | 107.8° | 109.5° |
| N | CE | CZ | 111.4° | 109.5° |
| N | CE | HE | 108.7° | 109.5° |
| CE | N | H | 109.5° | 111.0° |
| CE | N | H2 | 109.5° | 111.0° |
| CE | CZ | OH | 111.2° | 109.5° |
| CE | CZ | HZ1 | 109.0° | 109.5° |
| CE | CZ | HZ2 | 109.1° | 109.5° |
| CZ | CE | HE | 108.1° | 109.5° |
| OH | CZ | HZ1 | 109.0° | 109.4° |
| OH | CZ | HZ2 | 109.0° | 109.5° |
| CZ | OH | H1 | 109.5° | 114.0° |
| HA1 | CA | HA2 | 109.5° | 109.4° |
| HG1 | CG | HG2 | 109.5° | 109.4° |
| HZ1 | CZ | HZ2 | 109.4° | 109.5° |
| H | N | H2 | 109.4° | 111.0° |
| C | OXT | HXT | 90.0° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | OXT | 40.7° | 179.7° |
| O | C | CA | CB | 63.3° | 0.3° |
| O | C | CA | HA1 | 176.5° | 120.3° |
| O | C | CA | HA2 | 56.9° | 119.7° |
| O | C | OXT | HXT | 90.0° | 0.3° |
| C | CA | CB | HA1 | 120.2° | 120.0° |
| C | CA | CB | HA2 | 120.2° | 120.0° |
| C | CA | CB | O2 | 53.4° | 65.0° |
| C | CA | CB | CG | 173.8° | 175.0° |
| C | CA | HA1 | HA2 | 119.3° | 120.0° |
| C | CA | CB | HB | 65.5° | 55.0° |
| CA | C | OXT | HXT | 90.0° | 180.0° |
| CA | CB | O2 | CG | 123.2° | 120.0° |
| CA | CB | O2 | HB | 118.1° | 120.0° |
| CA | CB | CG | HB | 120.7° | 120.0° |
| CA | CB | CG | CD | 178.3° | 175.0° |
| CB | CA | HA1 | HA2 | 119.3° | 119.9° |
| CA | CB | CG | HG1 | 57.7° | 65.0° |
| CA | CB | CG | HG2 | 61.1° | 55.0° |
| CA | CB | O2 | HO2 | 180.0° | 60.0° |
| CB | CA | C | OXT | 22.6° | 180.0° |
| O2 | CB | CG | HB | 119.4° | 120.0° |
| O2 | CB | CG | CD | 58.4° | 65.0° |
| O2 | CB | CA | HA1 | 66.8° | 55.0° |
| O2 | CB | CA | HA2 | 173.6° | 175.0° |
| O2 | CB | CG | HG1 | 62.2° | 55.0° |
| O2 | CB | CG | HG2 | 179.0° | 175.0° |
| CB | CG | CD | HG1 | 120.6° | 120.0° |
| CB | CG | CD | HG2 | 120.6° | 120.1° |
| CB | CG | CD | O3 | 67.0° | 65.0° |
| CB | CG | CD | CE | 171.1° | 175.0° |
| CG | CB | CA | HA1 | 53.6° | 64.9° |
| CG | CB | CA | HA2 | 66.0° | 55.0° |
| CB | CG | HG1 | HG2 | 118.1° | 120.0° |
| CB | CG | CD | HD | 51.8° | 55.0° |
| CG | CB | O2 | HO2 | 56.8° | 60.0° |
| CG | CD | O3 | CE | 123.7° | 120.0° |
| CG | CD | O3 | HD | 118.0° | 120.0° |
| CG | CD | CE | HD | 119.4° | 120.0° |
| CG | CD | CE | N | 70.0° | 60.0° |
| CG | CD | CE | CZ | 166.4° | 180.0° |
| CD | CG | CB | HB | 61.0° | 55.0° |
| CD | CG | HG1 | HG2 | 118.2° | 119.9° |
| CG | CD | CE | HE | 48.7° | 60.0° |
| CG | CD | O3 | HO3 | 180.0° | 60.0° |
| O3 | CD | CE | HD | 119.2° | 120.0° |
| O3 | CD | CE | N | 51.3° | 60.0° |
| O3 | CD | CE | CZ | 72.2° | 60.0° |
| O3 | CD | CG | HG1 | 172.4° | 175.0° |
| O3 | CD | CG | HG2 | 53.6° | 55.1° |
| O3 | CD | CE | HE | 170.0° | 180.0° |
| CD | CE | N | CZ | 122.8° | 120.0° |
| CD | CE | N | HE | 118.2° | 120.0° |
| CD | CE | CZ | HE | 117.6° | 120.0° |
| CD | CE | CZ | OH | 157.8° | 175.0° |
| CE | CD | CG | HG1 | 50.6° | 55.0° |
| CE | CD | CG | HG2 | 68.3° | 64.9° |
| CD | CE | CZ | HZ1 | 82.0° | 65.0° |
| CD | CE | CZ | HZ2 | 37.5° | 55.0° |
| CE | CD | O3 | HO3 | 56.3° | 60.0° |
| CD | CE | N | H | 180.0° | 63.9° |
| CD | CE | N | H2 | 60.0° | 60.0° |
| N | CE | CZ | HE | 119.4° | 120.0° |
| N | CE | CZ | OH | 79.2° | 65.0° |
| N | CE | CZ | HZ1 | 41.1° | 55.0° |
| N | CE | CZ | HZ2 | 160.5° | 175.0° |
| N | CE | CD | HD | 170.5° | 180.0° |
| CE | N | H | H2 | 120.0° | 124.0° |
| CE | CZ | OH | HZ1 | 120.3° | 120.0° |
| CE | CZ | OH | HZ2 | 120.3° | 120.0° |
| CE | CZ | HZ1 | HZ2 | 119.2° | 120.0° |
| CZ | CE | CD | HD | 47.0° | 60.0° |
| CZ | CE | N | H | 57.2° | 176.0° |
| CZ | CE | N | H2 | 177.2° | 60.0° |
| CE | CZ | OH | H1 | 180.0° | 180.0° |
| OH | CZ | HZ1 | HZ2 | 119.2° | 120.0° |
| OH | CZ | CE | HE | 40.1° | 55.0° |
| HA1 | CA | CB | HB | 174.2° | 175.0° |
| HA1 | CA | C | OXT | 142.8° | 60.0° |
| HA2 | CA | CB | HB | 54.7° | 65.0° |
| HA2 | CA | C | OXT | 97.7° | 60.0° |
| HB | CB | CG | HG1 | 178.4° | 175.0° |
| HB | CB | CG | HG2 | 59.6° | 65.1° |
| HB | CB | O2 | HO2 | 61.9° | 180.0° |
| HG1 | CG | CD | HD | 68.8° | 65.0° |
| HG2 | CG | CD | HD | 172.4° | 175.1° |
| HZ1 | CZ | CE | HE | 160.4° | 175.0° |
| HZ1 | CZ | OH | H1 | 59.7° | 60.0° |
| HZ2 | CZ | CE | HE | 80.1° | 65.0° |
| HZ2 | CZ | OH | H1 | 59.7° | 60.0° |
| HD | CD | CE | HE | 70.8° | 60.0° |
| HD | CD | O3 | HO3 | 62.0° | 180.0° |
| HE | CE | N | H | 61.8° | 56.0° |
| HE | CE | N | H2 | 58.2° | 180.0° |
