YFQ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.45Å | |
CA | C | sing | 1.51Å | 1.53Å | |
CA | CB | sing | 1.53Å | 1.53Å | |
C | O | doub | 1.21Å | 1.23Å | |
CB | NG | sing | 1.47Å | 1.46Å | |
NG | CD | sing | 1.47Å | 1.47Å | |
C | OXT | sing | 1.34Å | 1.34Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | HB1 | sing | 1.09Å | 1.10Å | |
CB | HB2 | sing | 1.09Å | 1.10Å | |
NG | HG1 | sing | 1.01Å | 1.00Å | |
CD | HD1 | sing | 1.09Å | 1.10Å | |
CD | HD2 | sing | 1.09Å | 1.10Å | |
CD | HD3 | sing | 1.09Å | 1.10Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
N | H | sing | 1.01Å | 1.00Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | CA | C | 114.4° | 109.5° |
N | CA | CB | 110.2° | 109.5° |
N | CA | HA | 107.3° | 109.5° |
CA | N | H2 | 109.5° | 111.0° |
CA | N | H | 109.5° | 111.0° |
C | CA | CB | 111.7° | 109.5° |
CA | C | O | 119.9° | 120.0° |
CA | C | OXT | 117.0° | 120.0° |
C | CA | HA | 106.3° | 109.5° |
CA | CB | NG | 110.4° | 109.5° |
CB | CA | HA | 106.4° | 109.5° |
CA | CB | HB1 | 109.3° | 109.5° |
CA | CB | HB2 | 109.2° | 109.5° |
O | C | OXT | 123.1° | 120.0° |
CB | NG | CD | 111.2° | 111.0° |
NG | CB | HB1 | 109.3° | 109.5° |
NG | CB | HB2 | 109.2° | 109.5° |
CB | NG | HG1 | 109.0° | 111.0° |
CD | NG | HG1 | 109.0° | 111.0° |
NG | CD | HD1 | 109.5° | 109.4° |
NG | CD | HD2 | 109.4° | 109.5° |
NG | CD | HD3 | 109.4° | 109.4° |
C | OXT | HXT | 109.5° | 117.0° |
HB1 | CB | HB2 | 109.5° | 109.5° |
HD1 | CD | HD2 | 109.5° | 109.5° |
HD1 | CD | HD3 | 109.5° | 109.5° |
HD2 | CD | HD3 | 109.5° | 109.5° |
H2 | N | H | 109.5° | 111.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | CA | C | CB | 126.1° | 120.0° |
N | CA | C | HA | 118.2° | 120.0° |
N | CA | CB | HA | 116.0° | 120.0° |
N | CA | C | O | 149.7° | 20.0° |
N | CA | CB | NG | 162.5° | 55.0° |
N | CA | C | OXT | 32.2° | 160.0° |
N | CA | CB | HB1 | 42.4° | 65.0° |
N | CA | CB | HB2 | 77.3° | 175.0° |
CA | N | H2 | H | 120.0° | 123.9° |
C | CA | CB | HA | 115.6° | 120.0° |
CA | C | O | OXT | 178.0° | 180.0° |
C | CA | CB | NG | 69.1° | 175.0° |
C | CA | CB | HB1 | 170.8° | 55.0° |
C | CA | CB | HB2 | 51.1° | 65.0° |
C | CA | N | H2 | 180.0° | 60.0° |
C | CA | N | H | 60.0° | 176.1° |
CA | C | OXT | HXT | 178.1° | 180.0° |
CB | CA | C | O | 23.6° | 100.0° |
CA | CB | NG | HB1 | 120.2° | 120.0° |
CA | CB | NG | HB2 | 120.1° | 120.0° |
CA | CB | NG | CD | 168.3° | 180.0° |
CB | CA | C | OXT | 158.3° | 80.0° |
CA | CB | HB1 | HB2 | 119.6° | 120.0° |
CA | CB | NG | HG1 | 71.5° | 56.1° |
CB | CA | N | H2 | 53.1° | 60.0° |
CB | CA | N | H | 173.1° | 63.9° |
O | C | CA | HA | 92.1° | 140.0° |
O | C | OXT | HXT | 0.0° | 0.0° |
CB | NG | CD | HG1 | 120.2° | 123.9° |
NG | CB | CA | HA | 46.6° | 65.0° |
NG | CB | HB1 | HB2 | 119.6° | 120.0° |
CB | NG | CD | HD1 | 180.0° | 60.0° |
CB | NG | CD | HD2 | 60.0° | 60.0° |
CB | NG | CD | HD3 | 60.0° | 180.0° |
CD | NG | CB | HB1 | 48.1° | 60.0° |
CD | NG | CB | HB2 | 71.6° | 60.0° |
NG | CD | HD1 | HD2 | 120.0° | 120.0° |
NG | CD | HD1 | HD3 | 120.0° | 119.9° |
NG | CD | HD2 | HD3 | 120.0° | 120.0° |
OXT | C | CA | HA | 86.0° | 40.0° |
HA | CA | CB | HB1 | 73.6° | 175.0° |
HA | CA | CB | HB2 | 166.7° | 55.0° |
HA | CA | N | H2 | 62.3° | 180.0° |
HA | CA | N | H | 57.7° | 56.1° |
HB1 | CB | NG | HG1 | 168.3° | 176.1° |
HB2 | CB | NG | HG1 | 48.6° | 63.9° |
HG1 | NG | CD | HD1 | 59.8° | 176.0° |
HG1 | NG | CD | HD2 | 179.8° | 64.0° |
HG1 | NG | CD | HD3 | 60.2° | 56.1° |
HD1 | CD | HD2 | HD3 | 120.0° | 120.1° |