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SummaryGeometryRelated PDB entries

YF0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01N03sing1.47Å1.43Å
C02N03sing1.47Å1.42Å
C02C04sing1.54Å1.52Å
C01C05sing1.54Å1.52Å
C04C05sing1.56Å1.45Å
C05C06sing1.54Å1.50Å
C06N07sing1.47Å1.46Å
C04C08sing1.54Å1.53Å
N07C08sing1.47Å1.40Å
N03C11sing1.35Å1.39Å
C11O12doub1.21Å1.19Å
C11O13sing1.35Å1.39Å
O13C14sing1.45Å1.46Å
C14C15sing1.51Å1.50Å
C15C16doub1.38Å1.42ÅAromatic
C16C17sing1.38Å1.42ÅAromatic
C17C18doub1.38Å1.43ÅAromatic
C18C19sing1.38Å1.41ÅAromatic
C15C20sing1.38Å1.43ÅAromatic
C19C20doub1.38Å1.42ÅAromatic
C19CL21sing1.74Å1.75Å
C17CL22sing1.74Å1.76Å
N07C23sing1.35Å1.47Å
C23C24sing1.48Å1.53Å
C23O25doub1.22Å1.24Å
C24C26doub1.40Å1.44ÅAromatic
C26C27sing1.38Å1.35ÅAromatic
C27C28doub1.38Å1.48ÅAromatic
C28C29sing1.38Å1.40ÅAromatic
C24C30sing1.40Å1.45ÅAromatic
C29C30doub1.38Å1.39ÅAromatic
C28S31sing1.76Å1.78Å
S31N32sing1.66Å1.68Å
S31O33doub1.42Å1.48Å
S31O34doub1.42Å1.44Å
C01H36sing1.09Å1.10Å
C01H35sing1.09Å1.10Å
C02H37sing1.09Å1.10Å
C02H38sing1.09Å1.10Å
C04H09sing1.09Å1.10Å
C05H10sing1.09Å1.10Å
C06H39sing1.09Å1.10Å
C06H40sing1.09Å1.10Å
C16H45sing1.08Å1.08Å
C18H46sing1.08Å1.08Å
C20H47sing1.08Å1.08Å
C26H48sing1.08Å1.08Å
C27H49sing1.08Å1.08Å
C08H42sing1.09Å1.10Å
C08H41sing1.09Å1.10Å
C14H43sing1.09Å1.10Å
C14H44sing1.09Å1.10Å
C29H50sing1.08Å1.08Å
C30H51sing1.08Å1.08Å
N32H52sing0.97Å1.00Å
N32H53sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01N03C02109.4°108.8°
N03C01C05107.1°107.9°
C01N03C11135.9°125.6°
N03C01H36110.1°109.7°
N03C01H35110.1°109.8°
N03C02C04107.4°105.6°
C02N03C11113.3°125.6°
N03C02H37110.0°110.2°
N03C02H38110.0°110.2°
C02C04C05104.7°102.2°
C02C04C08117.8°108.8°
C04C02H37110.0°110.2°
C04C02H38110.0°110.2°
C02C04H09109.1°113.8°
C01C05C04106.6°103.4°
C01C05C06113.4°109.0°
C05C01H36110.1°109.8°
C05C01H35110.1°109.8°
C01C05H10110.5°113.2°
C04C05C06104.0°103.2°
C05C04C08106.1°102.0°
C05C04H09110.0°114.2°
C04C05H10111.4°113.4°
C05C06N07107.6°107.8°
C06C05H10110.7°113.8°
C05C06H39110.0°109.8°
C05C06H40109.9°109.8°
C06N07C08108.8°108.8°
C06N07C23121.2°125.6°
N07C06H39109.9°109.7°
N07C06H40109.9°109.8°
C04C08N07107.3°105.4°
C08C04H09108.9°114.6°
C04C08H42110.0°110.3°
C04C08H41110.0°110.3°
C08N07C23129.9°125.6°
N07C08H42110.0°110.2°
N07C08H41110.0°110.3°
N03C11O12119.7°120.0°
N03C11O13119.6°120.0°
O12C11O13119.0°120.0°
C11O13C14120.0°117.0°
O13C14C15110.0°109.5°
O13C14H43109.3°109.4°
O13C14H44109.4°109.5°
C14C15C16119.9°120.0°
C14C15C20119.4°120.0°
C15C14H43109.4°109.5°
C15C14H44109.4°109.4°
C15C16C17119.2°120.0°
C16C15C20120.7°120.0°
C15C16H45120.4°120.0°
C16C17C18120.6°120.0°
C16C17CL22120.4°120.0°
C17C16H45120.5°120.0°
C17C18C19119.6°120.0°
C18C17CL22119.0°120.0°
C17C18H46120.2°120.0°
C18C19C20120.6°120.0°
C18C19CL21118.8°120.0°
C19C18H46120.2°120.0°
C15C20C19119.4°120.0°
C15C20H47120.3°120.0°
C20C19CL21120.6°120.0°
C19C20H47120.3°120.0°
N07C23C24127.3°120.0°
N07C23O25116.5°120.0°
C24C23O25116.1°120.0°
C23C24C26118.2°120.1°
C23C24C30122.4°120.2°
C24C26C27120.7°119.8°
C26C24C30119.4°119.7°
C24C26H48119.7°120.1°
C26C27C28119.9°120.1°
C27C26H48119.7°120.0°
C26C27H49120.0°119.9°
C27C28C29119.7°120.3°
C27C28S31119.3°119.8°
C28C27H49120.0°120.0°
C28C29C30120.2°120.2°
C29C28S31121.0°119.8°
C28C29H50119.9°119.9°
C24C30C29120.1°119.9°
C24C30H51120.0°120.0°
C30C29H50119.9°119.9°
C29C30H51119.9°120.1°
C28S31N32109.3°107.2°
C28S31O33112.3°106.5°
C28S31O34109.9°106.4°
N32S31O33111.6°106.4°
N32S31O34107.5°106.4°
S31N32H52109.5°120.0°
S31N32H53109.4°120.0°
O33S31O34106.1°123.1°
H36C01H35109.5°109.8°
H37C02H38109.5°110.3°
H39C06H40109.5°109.8°
H42C08H41109.5°110.3°
H43C14H44109.4°109.5°
H52N32H53109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01N03C02C11168.7°179.9°
C01N03C02C0416.8°23.6°
N03C01C05H36119.6°119.5°
N03C01C05H35119.6°119.6°
N03C01C05C049.9°18.7°
N03C01C05C06103.9°128.0°
C01N03C11O121.2°0.0°
C01N03C11O13166.2°180.0°
N03C01H36H35121.1°120.8°
C01N03C02H37102.9°142.6°
C01N03C02H38136.5°95.4°
N03C01C05H10131.2°104.4°
N03C02C04H37119.7°119.0°
N03C02C04H38119.7°118.9°
C02N03C01C054.6°2.7°
N03C02C04C0522.6°34.2°
N03C02C04C08140.1°73.1°
C02N03C11O12165.7°179.9°
C02N03C11O1329.2°0.0°
C02N03C01H36124.2°116.9°
C02N03C01H35115.1°122.4°
N03C02H37H38120.9°121.9°
N03C02C04H0995.1°157.8°
C02C04C05C0119.3°31.7°
C02C04C05C08125.2°112.5°
C02C04C05H09117.1°123.3°
C02C04C05C06100.7°145.3°
C02C04C08H09124.9°128.6°
C02C04C08N0798.6°142.5°
C04C02N03C11174.5°156.4°
C04C02H37H38121.0°121.9°
C02C04C05H10140.0°91.2°
C02C04C08H4221.1°23.6°
C02C04C08H41141.8°98.5°
C01C05C04C06120.1°113.5°
C01C05C04H10120.7°122.9°
C01C05C06H10124.8°127.3°
C01C05C06N07138.3°89.8°
C01C05C04C08144.5°80.8°
C05C01N03C11169.5°177.2°
C05C01H36H35121.1°120.8°
C01C05C04H0997.8°155.1°
C01C05C06H39102.0°150.7°
C01C05C06H4018.6°29.8°
C04C05C06H10119.8°123.3°
C04C05C06N0722.9°19.6°
C05C04C08H09118.4°123.9°
C05C04C08N0718.2°35.0°
C04C05C01H36109.7°138.3°
C04C05C01H35129.5°100.9°
C05C04C02H3797.1°153.3°
C05C04C02H38142.2°84.7°
C04C05C06H39142.6°99.9°
C04C05C06H4096.8°139.3°
C05C04C08H42137.8°83.9°
C05C04C08H41101.5°154.0°
C05C06N07H39119.7°119.5°
C05C06N07H40119.7°119.6°
C06C05C04C0824.5°32.7°
C05C06N07C0811.9°2.3°
C05C06N07C23168.7°177.7°
C06C05C01H36136.4°112.4°
C06C05C01H3515.7°8.4°
C06C05C04H09142.1°91.4°
C05C06H39H40120.9°120.9°
C06N07C08C043.5°23.8°
C06N07C08C23179.3°179.9°
C06N07C23C24179.7°176.3°
C06N07C23O250.4°3.8°
N07C06C05H1096.9°142.9°
N07C06H39H40120.9°120.8°
C06N07C08H42123.2°95.2°
C06N07C08H41116.1°142.8°
C04C08N07H42119.7°119.0°
C04C08N07H41119.7°119.0°
C04C08N07C23175.7°156.2°
C08C04C02H3720.4°45.9°
C08C04C02H38100.2°167.9°
C08C04C05H1094.8°156.3°
C04C08H42H41121.0°122.0°
C08N07C23C241.0°3.6°
C08N07C23O25179.6°176.3°
N07C08C04H09136.6°88.9°
C08N07C06H39131.6°121.8°
C08N07C06H40107.8°117.3°
N07C08H42H41121.0°122.0°
N03C11O12O13165.1°180.0°
N03C11O13C14176.3°180.0°
C11N03C01H3670.8°63.2°
C11N03C01H3549.9°57.6°
C11N03C02H3765.8°37.3°
C11N03C02H3854.8°84.6°
O12C11O13C1418.5°0.0°
C11O13C14C15167.8°180.0°
C11O13C14H4372.1°60.0°
C11O13C14H4447.7°60.0°
O13C14C15H43120.1°120.0°
O13C14C15H44120.1°120.0°
O13C14C15C1635.9°90.0°
O13C14C15C20144.2°90.3°
O13C14H43H44119.8°120.0°
C14C15C16C20179.9°179.7°
C14C15C16C17179.7°179.7°
C14C15C20C19179.9°179.7°
C14C15C16H450.3°0.3°
C14C15C20H470.1°0.3°
C15C14H43H44119.8°119.9°
C15C16C17H45180.0°180.0°
C15C16C17C180.8°0.0°
C16C15C20C190.0°0.0°
C15C16C17CL22179.8°179.9°
C16C15C20H47180.0°180.0°
C16C15C14H43156.0°150.0°
C16C15C14H4484.2°30.0°
C16C17C18CL22179.0°179.9°
C16C17C18C190.8°0.0°
C17C16C15C200.4°0.1°
C16C17C18H46179.3°180.0°
C17C18C19H46180.0°180.0°
C17C18C19C200.3°0.1°
C17C18C19CL21179.1°180.0°
C18C17C16H45179.2°180.0°
C18C19C20C150.1°0.0°
C18C19C20CL21179.4°179.9°
C19C18C17CL22179.8°180.0°
C18C19C20H47179.9°179.9°
C15C20C19H47180.0°180.0°
C15C20C19CL21179.5°179.9°
C20C15C16H45179.6°180.0°
C20C15C14H4324.1°29.7°
C20C15C14H4495.7°149.7°
C20C19C18H46179.7°179.9°
CL21C19C18H460.9°0.0°
CL21C19C20H470.5°0.0°
CL22C17C16H450.2°0.1°
CL22C17C18H460.2°0.0°
N07C23C24O25179.4°179.9°
N07C23C24C26131.2°153.1°
N07C23C24C3051.4°27.2°
C23N07C06H3949.0°58.1°
C23N07C06H4071.6°62.7°
C23N07C08H4256.1°84.9°
C23N07C08H4164.6°37.1°
C23C24C26C30177.5°179.7°
C23C24C26C27178.9°180.0°
C23C24C30C29178.7°179.7°
C23C24C26H481.2°0.0°
C23C24C30H511.3°0.1°
O25C23C24C2649.4°27.0°
O25C23C24C30128.0°152.7°
C24C26C27H48180.0°180.0°
C24C26C27C281.0°0.0°
C26C24C30C291.3°0.6°
C24C26C27H49179.0°180.0°
C26C24C30H51178.7°179.8°
C26C27C28H49180.0°179.9°
C26C27C28C290.6°0.0°
C27C26C24C301.4°0.2°
C26C27C28S31179.6°179.9°
C27C28C29S31179.8°180.0°
C27C28C29C300.5°0.3°
C27C28S31N3296.6°90.0°
C27C28S31O33139.0°156.5°
C27C28S31O3421.1°23.5°
C28C27C26H48179.0°180.0°
C27C28C29H50179.5°180.0°
C28C29C30C240.9°0.6°
C28C29C30H50180.0°179.7°
C29C28S31N3283.1°90.0°
C29C28S31O3341.3°23.5°
C29C28S31O34159.1°156.4°
C29C28C27H49179.4°180.0°
C28C29C30H51179.1°179.8°
C24C30C29H51180.0°179.6°
C30C24C26H48178.6°179.7°
C24C30C29H50179.1°179.7°
C30C29C28S31179.7°179.8°
C28S31N32O33124.8°113.6°
C28S31N32O34119.3°113.6°
C28S31O33O34120.1°123.0°
S31C28C27H490.4°0.0°
S31C28C29H500.3°0.1°
C28S31N32H52180.0°150.0°
C28S31N32H5360.0°30.0°
N32S31O33O34116.8°122.9°
S31N32H52H53120.0°179.9°
O33S31N32H5255.2°36.5°
O33S31N32H53175.2°143.6°
O34S31N32H5260.7°96.4°
O34S31N32H5359.3°83.5°
H36C01C05H1011.6°15.2°
H35C01C05H10109.2°136.0°
H37C02C04H09145.2°83.1°
H38C02C04H0924.5°38.9°
H09C04C05H1022.9°32.1°
H09C04C08H42103.8°152.2°
H09C04C08H4116.9°30.2°
H10C05C06H3922.8°23.4°
H10C05C06H40143.4°97.5°
H48C26C27H491.0°0.0°
H50C29C30H510.9°0.1°

250835

PDB entries from 2026-03-18

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