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SummaryGeometryRelated PDB entries

YE5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAACAKsing1.53Å1.53Å
CAKOAPsing1.43Å1.43Å
OAPCAUsing1.36Å1.36Å
CAHCAUdoub1.39Å1.40ÅAromatic
CAHCAGsing1.38Å1.40ÅAromatic
CAUCAVsing1.40Å1.39ÅAromatic
CAGCARdoub1.40Å1.40ÅAromatic
CAVCASsing1.48Å1.42Å
CAVCAJdoub1.39Å1.40ÅAromatic
CAECASdoub1.39Å1.40ÅAromatic
CAECADsing1.38Å1.39ÅAromatic
CASCAIsing1.39Å1.41ÅAromatic
CARCAJsing1.40Å1.40ÅAromatic
CARCAQsing1.47Å1.41Å
CADCAFdoub1.38Å1.39ÅAromatic
OACCAQdoub1.21Å1.24Å
CAICATdoub1.39Å1.41ÅAromatic
CAQCABsing1.51Å1.53Å
CAFCATsing1.39Å1.40ÅAromatic
CATCAWsing1.48Å1.37Å
CAWNANsing1.34Å1.33ÅAromatic
CAWNAMdoub1.32Å1.33ÅAromatic
NANNAOdoub1.29Å1.29ÅAromatic
NAMNALsing1.29Å1.32ÅAromatic
NAONALsing1.29Å1.27ÅAromatic
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
CABH4sing1.09Å1.10Å
CABH5sing1.09Å1.10Å
CABH6sing1.09Å1.10Å
CADH7sing1.08Å1.08Å
CAEH8sing1.08Å1.08Å
CAFH9sing1.08Å1.08Å
CAGH10sing1.08Å1.08Å
CAHH11sing1.08Å1.08Å
CAIH12sing1.08Å1.08Å
CAJH13sing1.08Å1.08Å
CAKH14sing1.09Å1.10Å
CAKH15sing1.09Å1.10Å
NALH16sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAACAKOAP107.6°109.5°
CAKCAAH1109.5°109.5°
CAKCAAH2109.5°109.5°
CAKCAAH3109.5°109.5°
CAACAKH14109.9°109.5°
CAACAKH15110.0°109.5°
CAKOAPCAU117.1°117.0°
OAPCAKH14109.9°109.5°
OAPCAKH15109.9°109.5°
OAPCAUCAH123.4°119.9°
OAPCAUCAV115.0°120.0°
CAUCAHCAG120.1°120.3°
CAHCAUCAV121.6°120.1°
CAUCAHH11119.9°119.8°
CAHCAGCAR120.4°120.1°
CAHCAGH10119.8°120.0°
CAGCAHH11119.9°119.9°
CAUCAVCAS124.2°120.1°
CAUCAVCAJ116.6°119.8°
CAGCARCAJ117.8°119.9°
CAGCARCAQ119.4°120.1°
CARCAGH10119.8°119.9°
CASCAVCAJ119.2°120.1°
CAVCASCAE119.0°120.0°
CAVCASCAI122.8°120.1°
CAVCAJCAR123.5°119.8°
CAVCAJH13118.3°120.1°
CASCAECAD121.0°120.1°
CAECASCAI118.1°119.9°
CASCAEH8119.5°119.9°
CAECADCAF119.6°120.3°
CAECADH7120.2°119.9°
CADCAEH8119.5°120.0°
CASCAICAT121.9°119.8°
CASCAIH12119.0°120.1°
CAJCARCAQ122.8°120.1°
CARCAJH13118.2°120.1°
CARCAQOAC122.3°120.0°
CARCAQCAB118.8°120.0°
CADCAFCAT121.9°120.1°
CAFCADH7120.2°119.8°
CADCAFH9119.0°119.9°
OACCAQCAB118.2°120.0°
CAICATCAF117.6°119.8°
CAICATCAW123.8°120.1°
CATCAIH12119.1°120.1°
CAQCABH4109.5°109.5°
CAQCABH5109.5°109.5°
CAQCABH6109.4°109.5°
CAFCATCAW118.6°120.1°
CATCAFH9119.1°119.9°
CATCAWNAN126.5°126.6°
CATCAWNAM127.1°126.7°
NANCAWNAM106.2°106.7°
CAWNANNAO108.2°107.2°
CAWNAMNAL107.2°107.8°
NANNAONAL109.7°108.9°
NAMNALNAO108.8°109.3°
NAMNALH16125.6°125.3°
NAONALH16125.6°125.3°
H1CAAH2109.4°109.5°
H1CAAH3109.5°109.4°
H2CAAH3109.5°109.5°
H4CABH5109.5°109.5°
H4CABH6109.5°109.5°
H5CABH6109.5°109.4°
H14CAKH15109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAACAKOAPH14119.7°120.0°
CAACAKOAPH15119.7°120.1°
CAACAKOAPCAU171.1°180.0°
CAKCAAH1H2120.0°120.0°
CAKCAAH1H3120.0°120.0°
CAKCAAH2H3120.0°120.0°
CAACAKH14H15120.9°120.0°
CAKOAPCAUCAH11.1°0.0°
CAKOAPCAUCAV169.6°179.9°
OAPCAKCAAH1180.0°60.0°
OAPCAKCAAH260.0°180.0°
OAPCAKCAAH360.0°60.0°
OAPCAKH14H15120.9°120.0°
OAPCAUCAHCAV179.3°179.9°
OAPCAUCAHCAG179.8°179.9°
OAPCAUCAVCAS0.1°0.1°
OAPCAUCAVCAJ179.7°179.7°
OAPCAUCAHH110.2°0.0°
CAUOAPCAKH1469.2°60.0°
CAUOAPCAKH1551.4°59.9°
CAUCAHCAGH11180.0°179.9°
CAUCAHCAGCAR0.1°0.1°
CAHCAUCAVCAS179.5°180.0°
CAHCAUCAVCAJ0.9°0.2°
CAUCAHCAGH10179.9°179.7°
CAGCAHCAUCAV0.9°0.0°
CAHCAGCARH10180.0°179.6°
CAHCAGCARCAJ0.6°0.4°
CAHCAGCARCAQ177.6°179.6°
CAUCAVCASCAJ179.6°179.8°
CAUCAVCASCAE120.3°50.1°
CAUCAVCASCAI62.2°129.9°
CAUCAVCAJCAR0.2°0.5°
CAVCAUCAHH11179.1°179.9°
CAUCAVCAJH13179.8°179.9°
CAGCARCAJCAV0.5°0.6°
CAGCARCAJCAQ178.2°180.0°
CAGCARCAQOAC3.2°5.5°
CAGCARCAQCAB167.2°174.5°
CARCAGCAHH11179.9°180.0°
CAGCARCAJH13179.5°180.0°
CAVCASCAECAI177.7°180.0°
CAVCASCAECAD177.4°180.0°
CASCAVCAJCAR179.8°179.7°
CAVCASCAICAT177.5°179.7°
CAVCASCAEH82.6°0.0°
CAVCASCAIH122.5°0.3°
CASCAVCAJH130.2°0.3°
CAJCAVCASCAE60.1°129.7°
CAJCAVCASCAI117.4°50.3°
CAVCAJCARH13180.0°179.5°
CAVCAJCARCAQ177.6°179.4°
CASCAECADH8180.0°180.0°
CASCAECADCAF0.0°0.0°
CAECASCAICAT0.0°0.3°
CASCAECADH7180.0°179.8°
CAECASCAIH12180.0°179.7°
CADCAECASCAI0.2°0.0°
CAECADCAFH7180.0°179.8°
CAECADCAFCAT0.3°0.3°
CAECADCAFH9179.7°179.7°
CASCAICATH12180.0°179.4°
CASCAICATCAF0.3°0.5°
CASCAICATCAW177.9°179.9°
CAICASCAEH8179.8°180.0°
CAJCARCAQOAC178.7°174.5°
CAJCARCAQCAB11.0°5.5°
CAJCARCAGH10179.4°180.0°
CARCAQOACCAB170.4°179.9°
CARCAQCABH4170.8°5.0°
CARCAQCABH550.8°115.0°
CARCAQCABH669.2°125.1°
CAQCARCAGH102.4°0.1°
CAQCARCAJH132.4°0.0°
CADCAFCATCAI0.5°0.5°
CADCAFCATH9180.0°179.9°
CADCAFCATCAW178.3°179.9°
CAFCADCAEH8180.0°180.0°
OACCAQCABH40.0°174.9°
OACCAQCABH5120.0°65.1°
OACCAQCABH6120.0°54.9°
CAICATCAFCAW177.8°179.4°
CAICATCAWNAN169.5°0.6°
CAICATCAWNAM14.6°179.6°
CAICATCAFH9179.5°179.4°
CAQCABH4H5120.0°120.0°
CAQCABH4H6120.0°120.1°
CAQCABH5H6120.0°120.0°
CAFCATCAWNAN12.9°180.0°
CAFCATCAWNAM163.0°0.2°
CATCAFCADH7179.6°180.0°
CAFCATCAIH12179.7°180.0°
CATCAWNANNAM176.6°179.8°
CATCAWNANNAO177.8°180.0°
CATCAWNAMNAL177.8°180.0°
CAWCATCAFH91.7°0.0°
CAWCATCAIH122.1°0.6°
NANCAWNAMNAL1.3°0.2°
CAWNANNAONAL0.6°0.2°
NAMCAWNANNAO1.2°0.2°
CAWNAMNALNAO0.9°0.1°
CAWNAMNALH16179.1°179.9°
NANNAONALNAM0.2°0.1°
NANNAONALH16179.8°179.9°
NAMNALNAOH16180.0°180.0°
H1CAAH2H3120.0°120.0°
H1CAACAKH1460.3°180.0°
H1CAACAKH1560.3°60.1°
H2CAACAKH1459.7°60.0°
H2CAACAKH15179.7°59.9°
H3CAACAKH14179.7°60.1°
H3CAACAKH1559.7°180.0°
H4CABH5H6120.0°120.0°
H7CADCAEH80.0°0.3°
H7CADCAFH90.4°0.1°
H10CAGCAHH110.1°0.5°

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PDB entries from 2026-01-14

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