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YDV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.50Å1.46Å
N1C3sing1.49Å1.46Å
N1C11sing1.35Å1.39Å
C2C5sing1.51Å1.53Å
C3C4sing1.49Å1.52Å
C4C5sing1.58Å1.57Å
C4C8sing1.49Å1.53Å
C5C6sing1.51Å1.53Å
C6N7sing1.50Å1.46Å
N7C8sing1.49Å1.46Å
N7C22sing1.35Å1.36Å
C11C12sing1.48Å1.50Å
C11O13doub1.22Å1.21Å
C12C14doub1.40Å1.41ÅAromatic
C12C16sing1.39Å1.43ÅAromatic
C14C15sing1.36Å1.37ÅAromatic
C15C18doub1.39Å1.38ÅAromatic
C16C17doub1.40Å1.43ÅAromatic
C17C18sing1.41Å1.45ÅAromatic
C17N21sing1.35Å1.42ÅAromatic
C18N19sing1.37Å1.40ÅAromatic
N19N20sing1.40Å1.32ÅAromatic
N20N21doub1.29Å1.33ÅAromatic
C22C23sing1.48Å1.47Å
C22O24doub1.22Å1.23Å
C23C25doub1.40Å1.42ÅAromatic
C23C29sing1.40Å1.37ÅAromatic
C25C26sing1.38Å1.39ÅAromatic
C26C27doub1.39Å1.37ÅAromatic
C26C31sing1.51Å1.49Å
C27N28sing1.32Å1.34ÅAromatic
C27O30sing1.35Å1.35Å
N28C29doub1.32Å1.33ÅAromatic
O30C32sing1.43Å1.43Å
C31C37sing1.53Å1.51Å
C31C38sing1.53Å1.51Å
C32C33sing1.53Å1.50Å
C33F34sing1.40Å1.34Å
C33F35sing1.40Å1.32Å
C33F36sing1.40Å1.37Å
C37C38sing1.53Å1.49Å
C15H48sing1.08Å1.08Å
C16H49sing1.08Å1.08Å
C25H51sing1.08Å1.08Å
C2H40sing1.09Å1.10Å
C2H39sing1.09Å1.10Å
C3H41sing1.09Å1.10Å
C3H42sing1.09Å1.10Å
C4H10sing1.09Å1.10Å
C5H9sing1.09Å1.10Å
C6H44sing1.09Å1.10Å
C6H43sing1.09Å1.10Å
C8H45sing1.09Å1.10Å
C8H46sing1.09Å1.10Å
C14H47sing1.08Å1.08Å
N19H50sing0.97Å1.00Å
C29H52sing1.08Å1.08Å
C31H53sing1.09Å1.10Å
C32H54sing1.09Å1.10Å
C32H55sing1.09Å1.10Å
C37H57sing1.09Å1.10Å
C37H56sing1.09Å1.10Å
C38H58sing1.09Å1.10Å
C38H59sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C3108.6°107.8°
C2N1C11127.5°126.1°
N1C2C597.5°102.4°
N1C2H40112.4°110.9°
N1C2H39112.4°110.8°
C3N1C11123.8°126.1°
N1C3C499.6°104.6°
N1C3H41111.9°110.4°
N1C3H42111.9°110.4°
N1C11C12123.3°120.0°
N1C11O13115.0°120.1°
C2C5C491.4°97.8°
C2C5C6115.7°124.1°
C5C2H40112.4°110.8°
C5C2H39112.4°110.8°
C2C5H9117.2°111.2°
C3C4C592.1°100.7°
C3C4C8115.5°129.3°
C4C3H41111.9°110.5°
C4C3H42111.9°110.4°
C3C4H10116.4°108.5°
C5C4C896.4°100.7°
C4C5C692.8°97.8°
C5C4H10115.6°107.5°
C4C5H9116.5°111.8°
C4C8N799.9°104.6°
C8C4H10116.3°107.9°
C4C8H45111.8°110.4°
C4C8H46111.8°110.4°
C5C6N799.5°102.3°
C6C5H9117.4°111.7°
C5C6H44111.9°110.9°
C5C6H43111.9°110.9°
C6N7C8109.9°107.8°
C6N7C22125.2°126.1°
N7C6H44111.9°110.8°
N7C6H43111.9°110.8°
C8N7C22124.8°126.1°
N7C8H45111.8°110.5°
N7C8H46111.8°110.5°
N7C22C23121.8°119.9°
N7C22O24119.8°120.0°
C12C11O13121.7°120.0°
C11C12C14115.1°119.9°
C11C12C16122.1°119.9°
C14C12C16122.7°120.3°
C12C14C15122.2°120.5°
C12C14H47118.9°119.8°
C12C16C17114.4°119.6°
C12C16H49122.8°120.2°
C14C15C18117.9°120.1°
C14C15H48121.1°120.0°
C15C14H47118.9°119.8°
C15C18C17121.9°120.2°
C15C18N19132.0°133.8°
C18C15H48121.1°119.9°
C16C17C18120.9°119.4°
C16C17N21133.6°133.0°
C17C16H49122.8°120.2°
C18C17N21105.5°107.6°
C17C18N19106.1°106.1°
C17N21N20107.4°110.1°
C18N19N20107.8°106.7°
C18N19H50126.1°126.6°
N19N20N21113.2°109.5°
N20N19H50126.1°126.6°
C23C22O24118.3°120.0°
C22C23C25124.3°120.5°
C22C23C29116.2°120.5°
C25C23C29119.5°119.0°
C23C25C26119.2°118.4°
C23C25H51120.4°120.8°
C23C29N28121.9°120.6°
C23C29H52119.1°119.7°
C25C26C27115.7°119.3°
C25C26C31125.2°120.4°
C26C25H51120.4°120.9°
C27C26C31119.1°120.3°
C26C27N28126.2°120.9°
C26C27O30113.0°119.5°
C26C31C37118.2°117.5°
C26C31C38121.6°117.4°
C26C31H53115.6°115.6°
N28C27O30120.8°119.6°
C27N28C29117.5°121.9°
C27O30C32118.6°117.0°
N28C29H52119.0°119.7°
O30C32C33107.5°109.5°
O30C32H54110.0°109.5°
O30C32H55110.0°109.4°
C37C31C3859.1°60.0°
C31C37C3860.5°60.0°
C37C31H53115.3°117.5°
C31C37H57119.9°117.5°
C31C37H56119.9°117.5°
C31C38C3760.4°60.0°
C38C31H53115.2°117.5°
C31C38H58119.9°117.5°
C31C38H59119.9°117.4°
C32C33F34110.2°109.5°
C32C33F35111.6°109.5°
C32C33F36114.8°109.5°
C33C32H54110.0°109.5°
C33C32H55109.9°109.5°
F34C33F35106.1°109.5°
F34C33F36108.3°109.5°
F35C33F36105.5°109.5°
C38C37H57119.9°117.5°
C38C37H56119.9°117.4°
C37C38H58119.9°117.5°
C37C38H59119.9°117.5°
H40C2H39109.5°110.9°
H41C3H42109.5°110.4°
H44C6H43109.5°111.0°
H45C8H46109.5°110.4°
H54C32H55109.5°109.5°
H57C37H56109.5°115.6°
H58C38H59109.5°115.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C3C11176.1°179.8°
N1C2C5H40118.0°118.3°
N1C2C5H39118.0°118.2°
C2N1C3C416.6°6.8°
N1C2C5C457.3°45.6°
N1C2C5C6151.1°150.6°
C2N1C11C1219.5°174.5°
C2N1C11O13160.1°5.1°
N1C2H40H39125.6°123.5°
C2N1C3H41135.0°125.6°
C2N1C3H42101.7°112.0°
N1C2C5H963.7°71.5°
C3N1C2C526.8°25.8°
N1C3C4H41118.4°118.7°
N1C3C4H42118.4°118.8°
N1C3C4C551.3°35.0°
N1C3C4C8149.4°148.4°
C3N1C11C12165.1°5.3°
C3N1C11O1315.2°175.1°
C3N1C2H40144.8°144.0°
C3N1C2H3991.2°92.4°
N1C3H41H42124.6°122.4°
N1C3C4H1068.7°77.7°
C11N1C2C5149.2°154.4°
C11N1C3C4167.2°173.0°
N1C11C12O13179.7°179.6°
N1C11C12C1442.7°27.1°
N1C11C12C16139.8°153.5°
C11N1C2H4031.1°36.2°
C11N1C2H3992.8°87.4°
C11N1C3H4148.9°54.2°
C11N1C3H4274.4°68.2°
C2C5C4C367.0°50.1°
C2C5C4C6115.8°126.2°
C2C5C4H9121.6°116.6°
C2C5C4C8177.0°176.3°
C2C5C6H9145.2°137.7°
C2C5C6N7146.2°150.6°
C5C2H40H39125.6°123.5°
C2C5C4H1053.8°63.4°
C2C5C6H4495.5°91.2°
C2C5C6H4327.9°32.5°
C3C4C5C8116.0°133.7°
C3C4C5H10120.7°113.5°
C3C4C8H10141.9°134.1°
C3C4C5C6177.2°176.2°
C3C4C8N7141.1°148.4°
C4C3H41H42124.6°122.4°
C3C4C5H954.6°66.5°
C3C4C8H45100.5°92.8°
C3C4C8H4622.7°29.6°
C5C4C8H10122.7°112.5°
C4C5C6H9121.9°117.3°
C4C5C6N753.3°45.6°
C5C4C8N745.7°35.0°
C4C5C2H40175.3°163.8°
C4C5C2H3960.7°72.6°
C5C4C3H41169.7°153.8°
C5C4C3H4267.0°83.8°
C4C5C6H44171.6°163.8°
C4C5C6H4365.1°72.5°
C5C4C8H45164.1°153.8°
C5C4C8H4672.7°83.8°
C8C4C5C661.2°50.1°
C4C8N7C612.5°6.8°
C4C8N7H45118.4°118.8°
C4C8N7H46118.5°118.7°
C4C8N7C22169.8°173.3°
C8C4C3H4192.2°92.8°
C8C4C3H4231.1°29.6°
C8C4C5H961.4°67.2°
C4C8H45H46124.5°122.3°
C5C6N7H44118.3°118.2°
C5C6N7H43118.3°118.2°
C5C6N7C827.2°25.8°
C5C6N7C22150.5°154.1°
C6C5C2H4090.9°91.1°
C6C5C2H3933.1°32.4°
C6C5C4H1062.0°62.7°
C5C6H44H43124.7°123.6°
C6N7C8C22177.7°180.0°
C6N7C22C233.6°174.8°
C6N7C22O24178.5°5.1°
N7C6C5H968.6°71.7°
N7C6H44H43124.7°123.5°
C6N7C8H45130.9°125.5°
C6N7C8H46105.9°112.0°
C8N7C22C23179.1°5.3°
C8N7C22O241.1°174.8°
N7C8C4H1077.0°77.5°
C8N7C6H44145.5°144.0°
C8N7C6H4391.2°92.4°
N7C8H45H46124.5°122.5°
N7C22C23O24178.0°179.9°
N7C22C23C2591.5°17.5°
N7C22C23C2991.6°162.9°
C22N7C6H4432.2°35.9°
C22N7C6H4391.1°87.6°
C22N7C8H4551.3°54.5°
C22N7C8H4671.8°68.0°
C11C12C14C16177.5°179.4°
C11C12C14C15180.0°180.0°
C11C12C16C17178.7°179.8°
C11C12C16H491.2°0.3°
C11C12C14H470.0°0.0°
O13C11C12C14137.6°153.3°
O13C11C12C1639.9°26.1°
C12C14C15H47180.0°180.0°
C12C14C15C181.7°0.1°
C14C12C16C171.4°0.8°
C12C14C15H48178.3°179.7°
C14C12C16H49178.6°179.7°
C16C12C14C152.4°0.6°
C12C16C17H49180.0°179.4°
C12C16C17C180.2°0.6°
C12C16C17N21179.8°179.4°
C16C12C14H47177.6°179.4°
C14C15C18H48180.0°179.8°
C14C15C18C170.1°0.2°
C14C15C18N19179.4°179.7°
C15C18C17C160.9°0.0°
C15C18C17N19179.6°179.9°
C15C18C17N21179.1°180.0°
C15C18N19N20179.0°180.0°
C18C15C14H47178.3°180.0°
C15C18N19H501.0°0.1°
C16C17C18N21180.0°180.0°
C16C17C18N19179.6°180.0°
C16C17N21N20179.8°180.0°
C17C18N19N200.5°0.0°
C18C17N21N200.3°0.0°
C17C18C15H48179.9°180.0°
C18C17C16H49179.8°180.0°
C17C18N19H50179.5°180.0°
N21C17C18N190.5°0.0°
C17N21N20N190.1°0.0°
N21C17C16H490.2°0.0°
C18N19N20H50180.0°179.9°
C18N19N20N210.4°0.0°
N19C18C15H480.6°0.0°
N21N20N19H50179.6°180.0°
C22C23C25C29176.7°179.7°
C22C23C25C26177.2°179.9°
C22C23C29N28178.1°179.7°
C22C23C25H512.8°0.1°
C22C23C29H521.8°0.1°
O24C22C23C2590.5°162.6°
O24C22C23C2986.4°17.0°
C23C25C26H51180.0°180.0°
C23C25C26C270.1°0.1°
C23C25C26C31178.3°179.9°
C25C23C29N281.2°0.6°
C25C23C29H52178.8°179.7°
C29C23C25C260.5°0.3°
C23C29N28C271.3°0.6°
C23C29N28H52180.0°179.6°
C29C23C25H51179.5°179.7°
C25C26C27C31178.5°179.9°
C25C26C27N280.3°0.1°
C25C26C27O30178.7°180.0°
C25C26C31C3775.3°59.9°
C25C26C31C386.1°8.7°
C25C26C31H53142.1°154.4°
C26C27N28O30178.3°179.9°
C26C27N28C290.9°0.3°
C26C27O30C32175.5°180.0°
C27C26C31C37106.4°120.0°
C27C26C31C38175.6°171.5°
C27C26C25H51180.0°179.9°
C27C26C31H5336.2°25.8°
C31C26C27N28178.2°180.0°
C31C26C27O300.2°0.1°
C26C31C37C38111.8°107.4°
C26C31C37H53142.7°145.1°
C26C31C38H53148.3°145.0°
C31C26C25H511.7°0.1°
C26C31C37H57138.5°145.1°
C26C31C37H562.2°0.0°
C26C31C38H583.4°0.0°
C26C31C38H59144.3°145.0°
N28C27O30C323.0°0.0°
C27N28C29H52178.6°179.7°
O30C27N28C29179.2°179.7°
C27O30C32C33171.5°179.9°
C27O30C32H5451.8°60.0°
C27O30C32H5568.8°60.0°
O30C32C33H54119.7°120.0°
O30C32C33H55119.7°120.0°
O30C32C33F34125.3°60.0°
O30C32C33F35117.1°180.0°
O30C32C33F362.9°60.0°
O30C32H54H55120.9°120.0°
C37C31C38H53105.5°107.5°
C31C37C38H57109.6°107.5°
C31C37C38H56109.6°107.5°
C31C37H57H56144.4°145.7°
C37C31C38H58109.6°107.5°
C37C31C38H59109.6°107.5°
C31C38H58H59144.5°145.7°
C32C33F34F35120.9°120.0°
C32C33F34F36126.2°120.0°
C32C33F35F36125.3°120.0°
C33C32H54H55120.9°120.0°
F34C33F35F36114.7°120.0°
F34C33C32H545.7°60.0°
F34C33C32H55114.9°180.0°
F35C33C32H54123.2°60.0°
F35C33C32H552.6°60.0°
F36C33C32H54116.8°180.0°
F36C33C32H55122.6°60.0°
C38C37H57H56144.5°145.7°
C37C38H58H59144.5°145.7°
H48C15C14H471.7°0.3°
H40C2C5H954.3°46.7°
H39C2C5H9178.4°170.3°
H41C3C4H1049.7°41.1°
H42C3C4H10173.0°163.5°
H10C4C5H9175.4°180.0°
H10C4C8H4541.4°41.3°
H10C4C8H46164.6°163.7°
H9C5C6H4449.7°46.4°
H9C5C6H43173.1°170.1°
H53C31C37H574.2°0.0°
H53C31C37H56144.9°145.0°
H53C31C38H58144.9°145.0°
H53C31C38H594.0°0.0°
H57C37C38H58140.8°145.0°
H57C37C38H590.0°0.1°
H56C37C38H580.0°0.0°
H56C37C38H59140.8°145.1°

250835

PDB entries from 2026-03-18

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