Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YDQ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O15C14doub1.21Å1.18Å
C16C14sing1.51Å1.51Å
C14C11sing1.47Å1.52Å
C11C12doub1.41Å1.40ÅAromatic
C11C10sing1.39Å1.39ÅAromatic
C12C13sing1.36Å1.39ÅAromatic
C10C07doub1.40Å1.43ÅAromatic
C13C06doub1.41Å1.43ÅAromatic
C07C06sing1.42Å1.37ÅAromatic
C07C08sing1.41Å1.43ÅAromatic
C06C05sing1.40Å1.43ÅAromatic
C08C09doub1.36Å1.39ÅAromatic
C05C04doub1.38Å1.39ÅAromatic
C09C04sing1.40Å1.40ÅAromatic
C04N02sing1.39Å1.45Å
N02C03sing1.47Å1.46Å
N02C01sing1.46Å1.45Å
C10H1sing1.08Å1.08Å
C13H2sing1.08Å1.08Å
C01H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C01H5sing1.09Å1.10Å
C03H6sing1.09Å1.10Å
C03H7sing1.09Å1.10Å
C03H8sing1.09Å1.10Å
C05H9sing1.08Å1.08Å
C08H10sing1.08Å1.08Å
C09H11sing1.08Å1.08Å
C12H12sing1.08Å1.08Å
C16H13sing1.09Å1.10Å
C16H14sing1.09Å1.10Å
C16BR1sing1.97Å1.84Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O15C14C16119.3°120.0°
O15C14C11120.0°120.0°
C16C14C11120.7°120.0°
C14C16H13109.5°109.5°
C14C16H14109.5°109.5°
C14C16BR1109.5°109.5°
C14C11C12118.9°119.8°
C14C11C10120.1°119.8°
C12C11C10120.9°120.4°
C11C12C13120.1°120.8°
C11C12H12119.9°119.6°
C11C10C07119.0°119.4°
C11C10H1120.5°120.3°
C12C13C06119.4°120.1°
C12C13H2120.3°120.0°
C13C12H12120.0°119.6°
C10C07C06119.9°119.5°
C10C07C08120.3°120.9°
C07C10H1120.5°120.3°
C13C06C07120.6°119.7°
C13C06C05119.4°120.9°
C06C13H2120.3°120.0°
C06C07C08119.8°119.5°
C07C06C05120.0°119.4°
C07C08C09120.0°120.0°
C07C08H10120.0°120.0°
C06C05C04120.2°119.5°
C06C05H9119.9°120.2°
C08C09C04120.2°120.8°
C09C08H10120.0°120.0°
C08C09H11119.9°119.6°
C05C04C09119.9°120.8°
C05C04N02119.3°119.6°
C04C05H9119.9°120.3°
C09C04N02120.8°119.6°
C04C09H11119.9°119.6°
C04N02C03119.7°120.0°
C04N02C01120.0°120.0°
C03N02C01120.2°120.0°
N02C03H6109.5°109.5°
N02C03H7109.4°109.5°
N02C03H8109.5°109.5°
N02C01H3109.5°109.5°
N02C01H4109.4°109.5°
N02C01H5109.5°109.4°
H3C01H4109.5°109.4°
H3C01H5109.4°109.5°
H4C01H5109.5°109.5°
H6C03H7109.5°109.5°
H6C03H8109.5°109.5°
H7C03H8109.5°109.4°
H13C16H14109.5°109.5°
H13C16BR1109.5°109.4°
H14C16BR1109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O15C14C16C11177.5°180.0°
O15C14C11C1229.3°180.0°
O15C14C11C10149.4°0.1°
O15C14C16H13156.2°120.0°
O15C14C16H1483.9°120.0°
O15C14C16BR136.1°0.0°
C16C14C11C12153.2°0.0°
C16C14C11C1028.1°179.9°
C14C16H13H14120.0°120.1°
C14C16H13BR1120.1°120.0°
C14C16H14BR1120.0°120.0°
C14C11C12C10178.7°179.9°
C14C11C12C13178.7°180.0°
C14C11C10C07178.7°180.0°
C14C11C10H11.3°0.2°
C14C11C12H121.3°0.1°
C11C14C16H1321.3°60.0°
C11C14C16H1498.7°60.0°
C11C14C16BR1141.3°180.0°
C11C12C13H12180.0°180.0°
C12C11C10C070.0°0.1°
C11C12C13C060.0°0.2°
C12C11C10H1180.0°179.7°
C11C12C13H2180.0°179.7°
C10C11C12C130.0°0.0°
C11C10C07H1180.0°179.8°
C11C10C07C060.1°0.1°
C11C10C07C08179.9°179.8°
C10C11C12H12180.0°180.0°
C12C13C06H2180.0°179.5°
C12C13C06C070.1°0.5°
C12C13C06C05179.8°180.0°
C10C07C06C130.2°0.4°
C10C07C06C08180.0°179.9°
C10C07C06C05179.8°180.0°
C10C07C08C09179.7°180.0°
C10C07C08H100.3°0.1°
C13C06C07C05179.9°179.5°
C13C06C07C08179.8°179.5°
C13C06C05C04179.9°179.5°
C13C06C05H90.1°0.5°
C06C13C12H12180.0°179.7°
C06C07C08C090.3°0.1°
C07C06C05C040.1°0.0°
C06C07C10H1179.9°180.0°
C07C06C13H2179.9°180.0°
C07C06C05H9179.9°180.0°
C06C07C08H10179.7°180.0°
C08C07C06C050.2°0.0°
C07C08C09H10180.0°179.9°
C07C08C09C040.1°0.1°
C08C07C10H10.1°0.1°
C07C08C09H11179.9°179.9°
C06C05C04H9180.0°180.0°
C06C05C04C090.3°0.0°
C06C05C04N02179.6°180.0°
C05C06C13H20.2°0.5°
C08C09C04C050.2°0.0°
C08C09C04H11180.0°180.0°
C08C09C04N02179.5°180.0°
C05C04C09N02179.4°180.0°
C05C04N02C031.6°0.1°
C05C04N02C01179.6°180.0°
C05C04C09H11179.8°180.0°
C09C04N02C03177.8°180.0°
C09C04N02C011.0°0.0°
C09C04C05H9179.7°180.0°
C04C09C08H10179.9°180.0°
C04N02C03C01178.8°180.0°
C04N02C01H3180.0°90.0°
C04N02C01H460.0°150.1°
C04N02C01H560.0°30.1°
C04N02C03H6180.0°90.1°
C04N02C03H760.0°149.9°
C04N02C03H860.0°30.0°
N02C04C05H90.4°0.0°
N02C04C09H110.5°0.0°
C03N02C01H31.2°90.0°
C03N02C01H4121.2°30.0°
C03N02C01H5118.8°150.0°
N02C03H6H7120.0°120.0°
N02C03H6H8120.0°120.0°
N02C03H7H8120.0°120.0°
N02C01H3H4120.0°120.0°
N02C01H3H5120.0°120.0°
N02C01H4H5120.0°120.0°
C01N02C03H61.2°90.0°
C01N02C03H7118.8°30.0°
C01N02C03H8121.2°150.0°
H2C13C12H120.0°0.2°
H3C01H4H5120.0°120.0°
H6C03H7H8120.0°120.1°
H10C08C09H110.1°0.1°
H13C16H14BR1120.0°119.9°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon