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SummaryGeometryRelated PDB entries

YDN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N01C02sing1.49Å1.56Å
N01C03sing1.50Å1.52Å
C03C04sing1.51Å1.57Å
C02C05sing1.50Å1.55Å
C04C05sing1.58Å1.53Å
C05C06sing1.49Å1.61Å
C06N07sing1.49Å1.55Å
C04C08sing1.51Å1.59Å
N07C08sing1.50Å1.55Å
N07C11sing1.35Å1.38Å
C11C12sing1.48Å1.47Å
C11O13doub1.22Å1.21Å
C12C14doub1.40Å1.37ÅAromatic
C14C15sing1.36Å1.37ÅAromatic
C12C16sing1.39Å1.39ÅAromatic
C16C17doub1.40Å1.40ÅAromatic
C15C18doub1.39Å1.42ÅAromatic
C17C18sing1.41Å1.38ÅAromatic
C18N19sing1.37Å1.37ÅAromatic
N19N20sing1.40Å1.36ÅAromatic
C17N21sing1.35Å1.35ÅAromatic
N20N21doub1.29Å1.36ÅAromatic
N01C22sing1.35Å1.39Å
C22C23sing1.51Å1.53Å
C22O24doub1.21Å1.22Å
C23C25sing1.53Å1.51Å
C25C26sing1.51Å1.49Å
C26C27doub1.38Å1.40ÅAromatic
C27C28sing1.38Å1.39ÅAromatic
C28C29doub1.39Å1.40ÅAromatic
C29C30sing1.39Å1.35ÅAromatic
C26C31sing1.38Å1.39ÅAromatic
C30C31doub1.38Å1.37ÅAromatic
C29O32sing1.36Å1.36Å
O32C33sing1.43Å1.33Å
C33F34sing1.40Å1.31Å
C33F35sing1.40Å1.30Å
C33F36sing1.40Å1.31Å
C02H38sing1.09Å1.10Å
C02H37sing1.09Å1.10Å
C04H09sing1.09Å1.10Å
C05H10sing1.09Å1.10Å
C06H42sing1.09Å1.10Å
C06H41sing1.09Å1.10Å
C15H46sing1.08Å1.08Å
C16H47sing1.08Å1.08Å
C23H50sing1.09Å1.10Å
C23H49sing1.09Å1.10Å
C25H51sing1.09Å1.10Å
C25H52sing1.09Å1.10Å
C27H53sing1.08Å1.08Å
C28H54sing1.08Å1.08Å
C03H39sing1.09Å1.10Å
C03H40sing1.09Å1.10Å
C08H43sing1.09Å1.10Å
C08H44sing1.09Å1.10Å
C14H45sing1.08Å1.08Å
N19H48sing0.97Å1.00Å
C30H55sing1.08Å1.08Å
C31H56sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C02N01C03110.8°107.8°
N01C02C05106.2°104.6°
C02N01C22126.0°126.1°
N01C02H38110.3°110.4°
N01C02H37110.3°110.5°
N01C03C04101.9°102.4°
C03N01C22123.1°126.1°
N01C03H39111.3°110.9°
N01C03H40111.3°110.9°
C03C04C05112.9°97.8°
C03C04C08135.9°124.1°
C03C04H0995.6°111.7°
C04C03H39111.3°110.7°
C04C03H40111.3°110.8°
C02C05C04103.5°100.6°
C02C05C06135.3°129.3°
C05C02H38110.3°110.4°
C05C02H37110.3°110.4°
C02C05H10103.3°108.5°
C04C05C06104.9°100.6°
C05C04C08108.1°97.8°
C05C04H0995.8°111.9°
C04C05H10103.4°107.6°
C05C06N0798.0°104.6°
C06C05H10102.8°107.9°
C05C06H42112.2°110.4°
C05C06H41112.3°110.4°
C06N07C08115.6°107.8°
C06N07C11122.0°126.1°
N07C06H42112.2°110.4°
N07C06H41112.3°110.4°
C04C08N0799.3°102.4°
C08C04H0995.6°111.2°
C04C08H43111.9°110.8°
C04C08H44112.0°110.8°
C08N07C11122.4°126.1°
N07C08H43111.9°110.8°
N07C08H44111.9°110.8°
N07C11C12126.5°120.0°
N07C11O13112.1°120.0°
C12C11O13120.9°120.0°
C11C12C14114.9°119.9°
C11C12C16123.2°119.8°
C12C14C15118.9°120.5°
C14C12C16121.7°120.3°
C12C14H45120.6°119.8°
C14C15C18120.9°120.2°
C14C15H46119.6°120.0°
C15C14H45120.6°119.8°
C12C16C17119.7°119.5°
C12C16H47120.2°120.3°
C16C17C18119.1°119.4°
C16C17N21133.2°133.0°
C17C16H47120.2°120.2°
C15C18C17119.6°120.2°
C15C18N19131.4°133.8°
C18C15H46119.5°119.9°
C17C18N19109.0°106.1°
C18C17N21107.6°107.6°
C18N19N20105.7°106.7°
C18N19H48127.1°126.6°
N19N20N21110.2°109.5°
N20N19H48127.2°126.7°
C17N21N20107.5°110.1°
N01C22C23117.7°120.0°
N01C22O24116.7°120.0°
C23C22O24125.6°120.0°
C22C23C25115.7°109.5°
C22C23H50107.9°109.5°
C22C23H49107.9°109.5°
C23C25C26108.6°109.5°
C25C23H50107.9°109.5°
C25C23H49107.9°109.5°
C23C25H51109.7°109.5°
C23C25H52109.7°109.5°
C25C26C27122.5°120.0°
C25C26C31117.0°120.0°
C26C25H51109.7°109.5°
C26C25H52109.7°109.5°
C26C27C28116.5°120.1°
C27C26C31120.5°120.1°
C26C27H53121.8°120.0°
C27C28C29121.8°119.9°
C28C27H53121.7°120.0°
C27C28H54119.1°120.1°
C28C29C30120.5°119.9°
C28C29O32124.3°120.0°
C29C28H54119.1°120.0°
C29C30C31118.9°120.0°
C30C29O32115.1°120.1°
C29C30H55120.6°120.0°
C26C31C30121.8°120.1°
C26C31H56119.1°119.9°
C31C30H55120.5°120.0°
C30C31H56119.1°120.0°
C29O32C33119.6°117.0°
O32C33F34109.5°109.5°
O32C33F35111.1°109.5°
O32C33F36106.6°109.5°
F34C33F35108.6°109.5°
F34C33F36111.7°109.5°
F35C33F36109.5°109.4°
H38C02H37109.4°110.4°
H42C06H41109.5°110.4°
H50C23H49109.5°109.5°
H51C25H52109.5°109.5°
H39C03H40109.5°110.9°
H43C08H44109.5°110.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C02N01C03C22177.2°179.9°
C02N01C03C0412.3°25.9°
N01C02C05H38119.5°118.8°
N01C02C05H37119.5°118.9°
N01C02C05C0420.8°35.0°
N01C02C05C06148.9°148.3°
C02N01C22C23178.3°180.0°
C02N01C22O241.1°0.1°
N01C02H38H37121.5°122.5°
N01C02C05H1086.8°77.8°
C02N01C03H39131.1°144.0°
C02N01C03H40106.4°92.3°
N01C03C04H39118.8°118.2°
N01C03C04H40118.8°118.3°
C03N01C02C0521.7°6.7°
N01C03C04C051.4°45.7°
N01C03C04C08158.7°150.6°
C03N01C22C231.6°0.1°
C03N01C22O24177.9°180.0°
C03N01C02H3897.8°125.5°
C03N01C02H37141.2°112.1°
N01C03C04H0997.3°71.7°
N01C03H39H40123.5°123.6°
C03C04C05C0214.2°50.1°
C03C04C05C08163.6°126.2°
C03C04C05H0998.6°117.2°
C03C04C05C06159.3°176.3°
C03C04C08H09104.0°137.9°
C03C04C08N07179.1°150.6°
C04C03N01C22164.8°154.2°
C03C04C05H1093.3°63.4°
C04C03H39H40123.5°123.4°
C03C04C08H4360.8°32.3°
C03C04C08H4462.6°91.2°
C02C05C04C06145.1°133.7°
C02C05C04H10107.5°113.5°
C02C05C06H10124.4°134.1°
C02C05C06N07162.9°148.4°
C02C05C04C08177.8°176.2°
C05C02N01C22155.3°173.2°
C05C02H38H37121.5°122.3°
C02C05C04H0984.4°67.2°
C02C05C06H4244.8°29.6°
C02C05C06H4179.0°92.8°
C04C05C06H10107.9°112.6°
C04C05C06N0735.2°35.1°
C05C04C08H0998.0°117.1°
C05C04C08N0721.1°45.6°
C04C05C02H3898.7°153.8°
C04C05C02H37140.3°83.9°
C04C05C06H4282.8°83.8°
C04C05C06H41153.3°153.8°
C05C04C03H39117.3°163.9°
C05C04C03H40120.2°72.6°
C05C04C08H4397.2°72.6°
C05C04C08H44139.4°163.9°
C05C06N07H42118.1°118.8°
C05C06N07H41118.1°118.8°
C06C05C04C0837.2°50.1°
C05C06N07C0823.7°6.8°
C05C06N07C11157.7°173.2°
C06C05C02H3829.4°92.8°
C06C05C02H3791.6°29.5°
C06C05C04H0960.7°66.5°
C05C06H42H41125.4°122.4°
C06N07C08C042.9°25.8°
C06N07C08C11178.6°180.0°
C06N07C11C12174.6°176.3°
C06N07C11O132.5°3.6°
N07C06C05H1072.7°77.5°
N07C06H42H41125.4°122.4°
C06N07C08H43121.2°92.4°
C06N07C08H44115.4°144.0°
C04C08N07H43118.3°118.2°
C04C08N07H44118.3°118.2°
C04C08N07C11178.5°154.2°
C08C04C05H1070.3°62.8°
C08C04C03H3939.9°91.2°
C08C04C03H4082.5°32.3°
C04C08H43H44124.8°123.5°
C08N07C11C126.9°3.7°
C08N07C11O13179.0°176.4°
N07C08C04H0976.9°71.5°
C08N07C06H4294.4°112.0°
C08N07C06H41141.8°125.6°
N07C08H43H44124.7°123.6°
N07C11C12O13171.4°179.9°
N07C11C12C1458.0°27.4°
N07C11C12C16126.2°153.1°
C11N07C06H4284.2°68.0°
C11N07C06H4139.6°54.4°
C11N07C08H4360.2°87.6°
C11N07C08H4463.2°36.0°
C11C12C14C16175.8°179.5°
C11C12C14C15179.2°180.0°
C11C12C16C17174.6°179.7°
C11C12C16H475.4°0.2°
C11C12C14H450.7°0.0°
O13C11C12C14113.4°152.7°
O13C11C12C1662.4°26.8°
C12C14C15H45180.0°180.0°
C14C12C16C170.9°0.7°
C12C14C15C184.6°0.0°
C12C14C15H46175.4°179.7°
C14C12C16H47179.1°179.7°
C15C14C12C163.4°0.5°
C14C15C18H46180.0°179.7°
C14C15C18C171.6°0.2°
C14C15C18N19175.5°179.7°
C12C16C17H47180.0°179.6°
C12C16C17C183.9°0.5°
C12C16C17N21179.5°179.5°
C16C12C14H45176.6°179.5°
C16C17C18C152.7°0.0°
C16C17C18N21176.6°180.0°
C16C17C18N19179.6°180.0°
C16C17N21N20178.9°180.0°
C15C18C17N19177.7°179.9°
C15C18N19N20179.1°180.0°
C15C18C17N21179.3°180.0°
C18C15C14H45175.4°180.0°
C15C18N19H481.0°0.0°
C17C18N19N201.8°0.0°
C18C17N21N203.0°0.0°
C17C18C15H46178.4°179.9°
C18C17C16H47176.1°179.9°
C17C18N19H48178.3°180.0°
C18N19N20H48180.0°180.0°
N19C18C17N213.0°0.0°
C18N19N20N210.1°0.0°
N19C18C15H464.5°0.0°
N19N20N21C172.0°0.0°
N21C17C16H470.5°0.0°
N21N20N19H48179.8°180.0°
N01C22C23O24179.4°179.9°
N01C22C23C25170.0°180.0°
C22N01C02H3885.2°54.4°
C22N01C02H3735.8°68.0°
N01C22C23H5049.2°60.0°
N01C22C23H4969.1°60.0°
C22N01C03H3946.0°36.1°
C22N01C03H4076.4°87.6°
C22C23C25H50120.9°120.0°
C22C23C25H49120.9°120.0°
C22C23C25C26179.5°180.0°
C22C23H50H49117.2°120.0°
C22C23C25H5160.6°60.0°
C22C23C25H5259.6°60.0°
O24C22C23C2510.6°0.0°
O24C22C23H50131.4°120.0°
O24C22C23H49110.3°120.0°
C23C25C26H51119.9°120.0°
C23C25C26H52119.9°120.0°
C23C25C26C2780.8°90.0°
C23C25C26C31100.7°90.3°
C25C23H50H49117.2°120.0°
C23C25H51H52120.4°120.0°
C25C26C27C31178.5°179.7°
C25C26C27C28179.9°180.0°
C25C26C31C30177.8°179.7°
C26C25C23H5058.6°60.0°
C26C25C23H4959.6°60.0°
C26C25H51H52120.4°120.0°
C25C26C27H530.0°0.0°
C25C26C31H562.2°0.0°
C26C27C28H53180.0°180.0°
C26C27C28C291.7°0.0°
C27C26C31C300.8°0.6°
C27C26C25H51159.4°30.0°
C27C26C25H5239.1°150.0°
C26C27C28H54178.3°180.0°
C27C26C31H56179.2°179.7°
C27C28C29H54180.0°180.0°
C27C28C29C300.3°0.0°
C28C27C26C311.4°0.3°
C27C28C29O32176.6°180.0°
C28C29C30O32177.1°180.0°
C28C29C30C312.5°0.2°
C28C29O32C3388.8°180.0°
C29C28C27H53178.3°180.0°
C28C29C30H55177.5°180.0°
C29C30C31C262.8°0.5°
C29C30C31H55180.0°179.8°
C30C29O32C3394.2°0.0°
C30C29C28H54179.7°180.0°
C29C30C31H56177.2°179.8°
C26C31C30H56180.0°179.7°
C31C26C25H5119.2°149.7°
C31C26C25H52139.5°29.7°
C31C26C27H53178.6°179.7°
C26C31C30H55177.2°179.7°
C31C30C29O32174.6°179.8°
C29O32C33F3459.8°60.0°
C29O32C33F35179.8°180.0°
C29O32C33F3661.1°60.0°
O32C29C28H543.4°0.0°
O32C29C30H555.4°0.0°
O32C33F34F35121.4°120.0°
O32C33F34F36117.8°120.0°
O32C33F35F36117.4°120.0°
F34C33F35F36122.1°120.0°
H38C02C05H10153.7°41.1°
H37C02C05H1032.7°163.4°
H09C04C05H10168.1°179.3°
H09C04C03H39144.0°46.6°
H09C04C03H4021.5°170.0°
H09C04C08H43164.8°170.3°
H09C04C08H4441.5°46.7°
H10C05C06H42169.3°163.7°
H10C05C06H4145.4°41.3°
H46C15C14H454.6°0.3°
H50C23C25H51178.5°180.0°
H50C23C25H5261.3°60.0°
H49C23C25H5160.3°60.0°
H49C23C25H52179.5°180.0°
H53C27C28H541.7°0.0°
H55C30C31H562.8°0.0°

251174

PDB entries from 2026-03-25

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