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YDE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.47Å1.48Å
N1C5sing1.47Å1.45Å
N1C15sing1.35Å1.34Å
C2C3sing1.54Å1.54Å
C3C4sing1.55Å1.56Å
C3C6sing1.53Å1.54Å
C4C5sing1.54Å1.52Å
C4C7sing1.54Å1.54Å
C6C7sing1.55Å1.55Å
C6C8sing1.54Å1.55Å
C7C10sing1.54Å1.53Å
C8N9sing1.47Å1.47Å
N9C10sing1.47Å1.45Å
N9C17sing1.35Å1.37Å
C15O16doub1.22Å1.22Å
C15C28sing1.48Å1.51Å
C17C18sing1.48Å1.51Å
C17O19doub1.22Å1.22Å
C18C20doub1.40Å1.39ÅAromatic
C18C22sing1.39Å1.41ÅAromatic
C20C21sing1.36Å1.37ÅAromatic
C21C24doub1.39Å1.39ÅAromatic
C22C23doub1.40Å1.42ÅAromatic
C23C24sing1.41Å1.42ÅAromatic
C23N27sing1.35Å1.35ÅAromatic
C24N25sing1.37Å1.38ÅAromatic
N25N26sing1.40Å1.39ÅAromatic
N26N27doub1.29Å1.30ÅAromatic
C28N29doub1.32Å1.32ÅAromatic
C28C31sing1.40Å1.41ÅAromatic
N29C33sing1.33Å1.34ÅAromatic
C30C32sing1.41Å1.39ÅAromatic
C30C31doub1.38Å1.39ÅAromatic
C30O38sing1.36Å1.36Å
C32C33doub1.42Å1.41ÅAromatic
C32C37sing1.40Å1.39ÅAromatic
C33C34sing1.41Å1.41ÅAromatic
C34C35doub1.36Å1.35ÅAromatic
C35C36sing1.39Å1.39ÅAromatic
C35C42sing1.51Å1.50Å
C36C37doub1.36Å1.36ÅAromatic
O38C39sing1.43Å1.44Å
C39C40sing1.53Å1.52Å
C39C41sing1.53Å1.54Å
C42F43sing1.40Å1.39Å
C42F44sing1.40Å1.42Å
C42F45sing1.40Å1.40Å
C2H47sing1.09Å1.10Å
C2H46sing1.09Å1.10Å
C3H12sing1.09Å1.10Å
C4H11sing1.09Å1.10Å
C5H48sing1.09Å1.10Å
C5H49sing1.09Å1.10Å
C6H14sing1.09Å1.10Å
C7H13sing1.09Å1.10Å
C8H51sing1.09Å1.10Å
C8H50sing1.09Å1.10Å
C10H52sing1.09Å1.10Å
C10H53sing1.09Å1.10Å
C20H54sing1.08Å1.08Å
C21H55sing1.08Å1.08Å
C22H56sing1.08Å1.08Å
N25H57sing0.97Å1.00Å
C31H58sing1.08Å1.08Å
C34H59sing1.08Å1.08Å
C36H60sing1.08Å1.08Å
C37H61sing1.08Å1.08Å
C39H62sing1.09Å1.10Å
C40H63sing1.09Å1.10Å
C40H65sing1.09Å1.10Å
C40H64sing1.09Å1.10Å
C41H66sing1.09Å1.10Å
C41H68sing1.09Å1.10Å
C41H67sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C5111.5°109.3°
C2N1C15126.9°125.3°
N1C2C3105.7°106.8°
N1C2H47110.4°110.0°
N1C2H46110.4°110.0°
C5N1C15121.6°125.3°
N1C5C4106.8°108.0°
N1C5H48110.1°109.8°
N1C5H49110.1°109.8°
N1C15O16117.5°120.0°
N1C15C28120.9°120.0°
C2C3C4104.2°103.7°
C2C3C6117.2°113.8°
C3C2H47110.4°109.9°
C3C2H46110.4°110.0°
C2C3H12114.5°115.0°
C4C3C688.7°87.2°
C3C4C5107.5°104.5°
C3C4C790.9°87.0°
C4C3H12114.3°116.6°
C3C4H11115.8°116.6°
C3C6C791.0°87.2°
C3C6C8115.0°113.8°
C6C3H12114.6°116.8°
C3C6H14115.2°116.0°
C5C4C7106.6°113.2°
C5C4H11116.6°115.0°
C4C5H48110.1°109.7°
C4C5H49110.1°109.7°
C4C7C689.1°87.1°
C4C7C10112.6°113.2°
C7C4H11116.3°116.8°
C4C7H13115.0°116.0°
C7C6C8102.3°103.7°
C6C7C10107.5°104.5°
C7C6H14115.0°116.6°
C6C7H13114.7°116.6°
C6C8N9106.5°106.7°
C8C6H14115.1°115.6°
C6C8H51110.2°110.0°
C6C8H50110.2°110.0°
C7C10N9106.0°107.9°
C10C7H13115.0°115.7°
C7C10H52110.3°109.7°
C7C10H53110.3°109.7°
C8N9C10107.3°109.4°
C8N9C17125.6°125.3°
N9C8H51110.2°110.0°
N9C8H50110.2°110.0°
C10N9C17127.1°125.3°
N9C10H52110.3°109.8°
N9C10H53110.4°109.8°
N9C17C18126.6°120.0°
N9C17O19116.0°120.0°
O16C15C28121.6°120.0°
C15C28N29120.8°119.2°
C15C28C31118.9°119.2°
C18C17O19117.3°120.0°
C17C18C20117.6°119.8°
C17C18C22124.1°119.9°
C20C18C22118.2°120.3°
C18C20C21122.9°120.4°
C18C20H54118.5°119.8°
C18C22C23119.7°119.5°
C18C22H56120.1°120.2°
C20C21C24120.3°120.1°
C21C20H54118.5°119.8°
C20C21H55119.9°119.9°
C21C24C23119.1°120.2°
C21C24N25132.9°133.7°
C24C21H55119.8°119.9°
C22C23C24119.8°119.4°
C22C23N27134.3°133.1°
C23C22H56120.2°120.3°
C24C23N27105.9°107.6°
C23C24N25108.0°106.1°
C23N27N26110.6°110.1°
C24N25N26104.8°106.7°
C24N25H57127.6°126.7°
N25N26N27110.7°109.5°
N26N25H57127.6°126.6°
N29C28C31120.3°121.6°
C28N29C33121.8°121.6°
C28C31C30119.5°119.6°
C28C31H58120.3°120.2°
N29C33C32120.8°120.1°
N29C33C34121.0°120.9°
C32C30C31118.8°118.0°
C32C30O38116.5°121.0°
C30C32C33118.7°119.1°
C30C32C37119.6°121.3°
C31C30O38124.7°121.0°
C30C31H58120.2°120.2°
C30O38C39120.3°117.0°
C33C32C37121.7°119.6°
C32C33C34118.2°119.0°
C32C37C36118.8°119.7°
C32C37H61120.6°120.2°
C33C34C35118.7°119.8°
C33C34H59120.7°120.2°
C34C35C36122.9°121.0°
C34C35C42118.0°119.5°
C35C34H59120.7°120.1°
C36C35C42119.1°119.5°
C35C36C37119.7°120.8°
C35C36H60120.2°119.6°
C35C42F43106.8°109.5°
C35C42F44110.5°109.4°
C35C42F45109.3°109.4°
C37C36H60120.1°119.6°
C36C37H61120.6°120.1°
O38C39C40106.8°109.5°
O38C39C41111.4°109.5°
O38C39H62110.1°109.5°
C40C39C41110.6°109.5°
C40C39H62109.1°109.4°
C39C40H63109.5°109.5°
C39C40H65109.5°109.5°
C39C40H64109.5°109.5°
C41C39H62108.8°109.5°
C39C41H66109.5°109.5°
C39C41H68109.5°109.5°
C39C41H67109.5°109.5°
F43C42F44112.5°109.5°
F43C42F45107.1°109.6°
F44C42F45110.5°109.5°
H47C2H46109.5°110.0°
H48C5H49109.5°109.8°
H51C8H50109.5°110.0°
H52C10H53109.5°109.8°
H63C40H65109.5°109.5°
H63C40H64109.5°109.5°
H65C40H64109.5°109.4°
H66C41H68109.5°109.5°
H66C41H67109.5°109.4°
H68C41H67109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C5C15177.5°179.8°
N1C2C3H47119.4°119.3°
N1C2C3H46119.4°119.4°
N1C2C3C420.2°27.4°
N1C2C3C675.7°65.6°
C2N1C5C411.1°1.1°
C2N1C15O161.4°0.0°
C2N1C15C28179.0°180.0°
N1C2H47H46121.7°121.3°
N1C2C3H12145.8°155.9°
C2N1C5H48108.5°118.4°
C2N1C5H49130.7°120.7°
C5N1C2C320.1°18.1°
N1C5C4C32.4°16.0°
N1C5C4H48119.6°119.6°
N1C5C4H49119.6°119.6°
N1C5C4C798.8°109.0°
C5N1C15O16178.4°179.7°
C5N1C15C283.9°0.3°
C5N1C2H47139.6°137.4°
C5N1C2H4699.3°101.3°
N1C5C4H11129.5°113.2°
N1C5H48H49121.2°120.8°
C15N1C2C3162.6°162.1°
C15N1C5C4171.4°179.1°
N1C15O16C28177.6°180.0°
N1C15C28N2998.2°0.0°
N1C15C28C3182.0°179.7°
C15N1C2H4743.1°42.8°
C15N1C2H4678.0°78.5°
C15N1C5H4869.0°61.3°
C15N1C5H4951.9°59.5°
C2C3C4C6117.8°113.8°
C2C3C4H12125.7°127.5°
C2C3C6H12138.5°137.8°
C2C3C4C514.0°26.0°
C2C3C4C7121.7°139.2°
C2C3C6C7109.3°128.9°
C2C3C6C8146.6°127.3°
C3C2H47H46121.8°121.3°
C2C3C4H11118.3°102.2°
C2C3C6H149.2°10.5°
C4C3C6H12116.2°118.5°
C3C4C5C796.4°93.0°
C3C4C5H11131.9°129.1°
C3C4C7H11119.6°118.5°
C4C3C6C73.9°25.2°
C4C3C6C8108.0°129.0°
C3C4C7C10104.7°79.4°
C4C3C2H47139.6°146.7°
C4C3C2H4699.2°92.0°
C3C4C5H48122.0°135.6°
C3C4C5H49117.1°103.6°
C4C3C6H14114.5°93.2°
C3C4C7H13120.9°143.4°
C6C3C4C5103.7°87.8°
C3C6C7C8115.9°113.8°
C3C6C7H14118.6°117.8°
C3C6C8H14137.5°138.0°
C3C6C7C10109.5°87.8°
C3C6C8N973.3°65.6°
C6C3C2H4743.7°53.7°
C6C3C2H46164.9°175.1°
C6C3C4H11123.9°144.0°
C3C6C7H13121.2°143.1°
C3C6C8H51167.2°175.0°
C3C6C8H5046.3°53.7°
C5C4C7H11131.8°137.1°
C5C4C7C6104.6°79.3°
C5C4C7C10146.8°176.2°
C5C4C3H12139.8°153.5°
C4C5H48H49121.3°120.7°
C5C4C7H1312.3°39.0°
C4C7C6C10113.5°113.2°
C4C7C6H13117.2°117.7°
C4C7C6C8119.8°139.2°
C4C7C10H13134.4°137.4°
C4C7C10N983.1°109.0°
C7C4C3H12112.5°93.3°
C7C4C5H48141.6°131.4°
C7C4C5H4920.7°10.7°
C4C7C6H14114.6°92.4°
C4C7C10H5236.3°10.6°
C4C7C10H53157.4°131.3°
C7C6C8H14125.5°129.0°
C6C7C10H13129.1°129.6°
C7C6C8N923.8°27.4°
C6C7C10N913.4°16.0°
C7C6C3H12112.3°93.3°
C6C7C4H11123.5°143.6°
C7C6C8H5195.8°91.9°
C7C6C8H50143.3°146.7°
C6C7C10H52132.8°103.7°
C6C7C10H53106.1°135.6°
C8C6C7C106.4°26.0°
C6C8N9H51119.6°119.3°
C6C8N9H50119.5°119.3°
C6C8N9C1033.9°18.1°
C6C8N9C17146.6°161.9°
C8C6C3H128.2°10.4°
C8C6C7H13122.9°103.0°
C6C8H51H50121.3°121.4°
C7C10N9C829.1°1.2°
C7C10N9H52119.4°119.6°
C7C10N9H53119.4°119.6°
C7C10N9C17151.3°178.9°
C10C7C4H1114.9°39.1°
C10C7C6H14131.9°154.4°
C7C10H52H53121.6°120.7°
C8N9C10C17179.6°180.0°
C8N9C17C18178.2°175.1°
C8N9C17O190.4°4.9°
N9C8C6H14149.2°156.4°
N9C8H51H50121.4°121.3°
C8N9C10H52148.5°120.8°
C8N9C10H5390.4°118.4°
C10N9C17C182.3°4.9°
C10N9C17O19179.9°175.1°
N9C10C7H13142.5°113.6°
C10N9C8H5185.7°101.2°
C10N9C8H50153.4°137.4°
N9C10H52H53121.6°120.8°
N9C17C18O19177.8°180.0°
N9C17C18C2072.0°43.9°
N9C17C18C22111.6°136.3°
C17N9C8H5193.9°78.7°
C17N9C8H5027.0°42.6°
C17N9C10H5231.9°59.3°
C17N9C10H5389.2°61.5°
O16C15C28N2984.2°180.0°
O16C15C28C3195.6°0.3°
C15C28N29C31179.8°179.7°
C15C28N29C33178.9°180.0°
C15C28C31C30179.9°179.9°
C15C28C31H580.1°0.0°
C17C18C20C22176.7°179.8°
C17C18C20C21179.2°180.0°
C17C18C22C23178.3°180.0°
C17C18C20H540.8°0.0°
C17C18C22H561.7°0.1°
O19C17C18C20105.8°136.1°
O19C17C18C2270.7°43.7°
C18C20C21H54180.0°180.0°
C18C20C21C242.2°0.0°
C20C18C22C231.8°0.3°
C18C20C21H55177.9°179.9°
C20C18C22H56178.2°179.7°
C22C18C20C212.6°0.3°
C18C22C23H56180.0°179.9°
C18C22C23C240.8°0.1°
C18C22C23N27179.5°180.0°
C22C18C20H54177.5°179.7°
C20C21C24H55180.0°179.9°
C20C21C24C231.0°0.4°
C20C21C24N25179.4°180.0°
C21C24C23C220.4°0.4°
C21C24C23N25179.7°179.7°
C21C24C23N27179.9°179.7°
C21C24N25N26179.8°179.9°
C24C21C20H54177.9°179.9°
C21C24N25H570.2°0.2°
C22C23C24N27179.8°179.9°
C22C23C24N25180.0°179.9°
C22C23N27N26179.9°179.6°
C23C24N25N260.2°0.3°
C24C23N27N260.1°0.3°
C23C24C21H55179.0°179.7°
C24C23C22H56179.2°180.0°
C23C24N25H57179.8°179.8°
N27C23C24N250.2°0.0°
C23N27N26N250.0°0.5°
N27C23C22H560.5°0.1°
C24N25N26H57180.0°179.9°
C24N25N26N270.1°0.5°
N25C24C21H550.6°0.1°
N27N26N25H57179.9°179.5°
N29C28C31C300.1°0.3°
C28N29C33C322.1°0.0°
C28N29C33C34178.9°179.9°
N29C28C31H58179.9°179.6°
C31C28N29C331.3°0.3°
C28C31C30C320.4°0.0°
C28C31C30H58180.0°179.9°
C28C31C30O38177.5°179.8°
N29C33C32C301.6°0.3°
N29C33C32C34179.0°180.0°
N29C33C32C37178.6°180.0°
N29C33C34C35178.0°180.0°
N29C33C34H592.0°0.0°
C32C30C31O38177.9°179.8°
C30C32C33C37179.8°179.8°
C30C32C33C34179.3°179.8°
C30C32C37C36179.5°179.8°
C32C30O38C39174.0°174.3°
C32C30C31H58179.6°179.9°
C30C32C37H610.5°0.1°
C31C30C32C330.4°0.3°
C31C30C32C37179.8°180.0°
C31C30O38C393.9°5.5°
O38C30C32C33178.4°180.0°
O38C30C32C371.7°0.2°
C30O38C39C4081.8°148.2°
C30O38C39C41157.4°91.9°
O38C30C31H582.5°0.3°
C30O38C39H6236.6°28.2°
C32C33C34C351.1°0.0°
C33C32C37C360.3°0.0°
C32C33C34H59178.9°180.0°
C33C32C37H61179.7°179.7°
C37C32C33C340.5°0.0°
C32C37C36C350.7°0.0°
C32C37C36H61180.0°179.7°
C32C37C36H60179.3°180.0°
C33C34C35H59180.0°180.0°
C33C34C35C361.5°0.0°
C33C34C35C42179.5°180.0°
C34C35C36C42179.0°179.9°
C34C35C36C371.3°0.0°
C34C35C42F43109.1°90.0°
C34C35C42F4413.6°150.0°
C34C35C42F45135.4°30.0°
C34C35C36H60178.6°180.0°
C35C36C37H60180.0°179.9°
C36C35C42F4369.9°90.0°
C36C35C42F44167.4°29.9°
C36C35C42F4545.5°149.9°
C36C35C34H59178.5°179.9°
C35C36C37H61179.3°179.6°
C42C35C36C37179.7°180.0°
C35C42F43F44121.4°119.9°
C35C42F43F45116.9°120.0°
C35C42F44F45121.1°119.9°
C42C35C34H590.5°0.0°
C42C35C36H600.3°0.1°
O38C39C40C41121.3°120.0°
O38C39C40H62119.0°120.0°
O38C39C41H62121.6°120.0°
O38C39C40H63180.0°60.0°
O38C39C40H6560.0°180.0°
O38C39C40H6460.0°60.0°
O38C39C41H66180.0°180.0°
O38C39C41H6860.0°60.0°
O38C39C41H6760.0°60.0°
C40C39C41H62119.8°120.0°
C39C40H63H65120.0°120.0°
C39C40H63H64120.0°120.1°
C39C40H65H64120.0°120.0°
C40C39C41H6661.4°60.0°
C40C39C41H6858.6°60.0°
C40C39C41H67178.6°180.0°
C41C39C40H6358.7°59.9°
C41C39C40H65178.7°60.0°
C41C39C40H6461.4°180.0°
C39C41H66H68120.0°120.1°
C39C41H66H67120.0°120.0°
C39C41H68H67120.0°120.0°
F43C42F44F45119.6°120.1°
H47C2C3H1294.8°84.8°
H46C2C3H1226.4°36.5°
H12C3C4H117.4°25.3°
H12C3C6H14129.3°148.3°
H11C4C5H4810.0°6.5°
H11C4C5H49110.9°127.2°
H11C4C7H13119.5°98.1°
H14C6C7H132.6°25.3°
H14C6C8H5129.7°37.0°
H14C6C8H5091.2°84.3°
H13C7C10H5298.1°126.7°
H13C7C10H5323.0°6.0°
H54C20C21H552.1°0.0°
H60C36C37H610.7°0.3°
H62C39C40H6361.0°180.0°
H62C39C40H6559.0°60.0°
H62C39C40H64179.0°60.0°
H62C39C41H6658.4°60.0°
H62C39C41H68178.4°NaN°
H62C39C41H6761.6°60.0°
H63C40H65H64120.0°120.0°
H66C41H68H67120.0°119.9°

251801

PDB entries from 2026-04-08

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