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SummaryGeometryRelated PDB entries

YD0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.50Å1.48Å
C01N03sing1.46Å1.37Å
N03C04sing1.44Å1.35Å
C04C05sing1.52Å1.47Å
C02C06sing1.49Å1.50Å
C05C07sing1.50Å1.65Å
C06C07sing1.51Å1.52Å
C07C08sing1.55Å1.48Å
C08N09sing1.48Å1.48Å
C06C10sing1.54Å1.48Å
N09C10sing1.49Å1.55Å
N03C13sing1.35Å1.48Å
C13C14sing1.46Å1.54Å
C13O15doub1.22Å1.22Å
C14C16doub1.35Å1.41Å
C16C17sing1.47Å1.53Å
C17C18doub1.40Å1.38ÅAromatic
C18C19sing1.38Å1.39ÅAromatic
C19C20doub1.39Å1.40ÅAromatic
C20C21sing1.39Å1.39ÅAromatic
C17C22sing1.40Å1.40ÅAromatic
C21C22doub1.38Å1.40ÅAromatic
C20O23sing1.36Å1.39Å
O23C24sing1.43Å1.37Å
C24F25sing1.40Å1.34Å
C24F26sing1.40Å1.32Å
C24F27sing1.40Å1.32Å
N09C28sing1.35Å1.51Å
C28N29sing1.35Å1.49Å
C28O30doub1.21Å1.22Å
N29C31sing1.47Å1.44Å
C31C32sing1.53Å1.43Å
N29C33sing1.47Å1.38Å
C33C34sing1.51Å1.57Å
C32C35sing1.51Å1.54Å
C34C35doub1.35Å1.50ÅAromatic
C35N36sing1.34Å1.36ÅAromatic
N36N37sing1.40Å1.46ÅAromatic
C34C38sing1.39Å1.38ÅAromatic
N37C38doub1.30Å1.44ÅAromatic
C01H40sing1.09Å1.10Å
C01H39sing1.09Å1.10Å
C02H41sing1.09Å1.10Å
C02H42sing1.09Å1.10Å
C04H44sing1.09Å1.10Å
C04H43sing1.09Å1.10Å
C05H46sing1.09Å1.10Å
C05H45sing1.09Å1.10Å
C06H12sing1.09Å1.10Å
C07H11sing1.09Å1.10Å
C10H50sing1.09Å1.10Å
C10H49sing1.09Å1.10Å
C16H52sing1.08Å1.08Å
C18H53sing1.08Å1.08Å
C19H54sing1.08Å1.08Å
C21H55sing1.08Å1.08Å
C22H56sing1.08Å1.08Å
C08H48sing1.09Å1.10Å
C08H47sing1.09Å1.10Å
C14H51sing1.08Å1.08Å
C31H58sing1.09Å1.10Å
C31H57sing1.09Å1.10Å
C32H60sing1.09Å1.10Å
C32H59sing1.09Å1.10Å
C33H61sing1.09Å1.10Å
C33H62sing1.09Å1.10Å
N36H63sing0.97Å1.00Å
C38H64sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C02C01N03114.1°113.3°
C01C02C06117.8°116.5°
C02C01H40108.3°108.7°
C02C01H39108.3°108.7°
C01C02H41107.4°108.0°
C01C02H42107.3°108.0°
C01N03C04130.3°121.3°
C01N03C13116.0°119.4°
N03C01H40108.3°108.7°
N03C01H39108.3°108.7°
N03C04C05117.6°110.1°
C04N03C13113.7°119.3°
N03C04H44107.4°109.4°
N03C04H43107.4°109.3°
C04C05C07114.1°115.0°
C05C04H44107.4°109.4°
C05C04H43107.4°109.3°
C04C05H46108.3°108.4°
C04C05H45108.3°108.4°
C02C06C07120.7°119.9°
C02C06C10108.3°112.9°
C06C02H41107.3°108.1°
C06C02H42107.4°108.1°
C02C06H12109.0°106.8°
C05C07C06118.7°116.1°
C05C07C08116.7°108.8°
C07C05H46108.3°108.4°
C07C05H45108.3°108.4°
C05C07H11105.3°109.2°
C06C07C08101.6°104.6°
C07C06C10100.2°104.2°
C07C06H12108.7°106.5°
C06C07H11106.6°109.2°
C07C08N09105.3°106.9°
C08C07H11107.1°108.6°
C07C08H48110.5°110.0°
C07C08H47110.5°110.0°
C08N09C10105.6°106.1°
C08N09C28120.9°127.0°
N09C08H48110.5°110.0°
N09C08H47110.5°109.9°
C06C10N09101.8°102.4°
C10C06H12109.3°105.5°
C06C10H50111.3°110.8°
C06C10H49111.4°110.9°
C10N09C28133.4°127.0°
N09C10H50111.4°110.7°
N09C10H49111.3°110.9°
N03C13C14121.2°120.0°
N03C13O15120.5°120.0°
C14C13O15118.3°120.0°
C13C14C16121.2°120.0°
C13C14H51119.4°120.0°
C14C16C17117.5°120.0°
C14C16H52121.2°120.0°
C16C14H51119.4°120.0°
C16C17C18118.4°120.1°
C16C17C22120.1°120.1°
C17C16H52121.3°120.0°
C17C18C19119.4°119.9°
C18C17C22121.5°119.8°
C17C18H53120.3°120.1°
C18C19C20119.6°120.1°
C19C18H53120.3°120.0°
C18C19H54120.2°119.9°
C19C20C21121.2°120.2°
C19C20O23116.7°119.9°
C20C19H54120.2°120.0°
C20C21C22119.2°120.1°
C21C20O23122.1°119.9°
C20C21H55120.4°120.0°
C17C22C21119.2°119.9°
C17C22H56120.4°120.1°
C22C21H55120.4°119.9°
C21C22H56120.4°120.0°
C20O23C24124.9°117.0°
O23C24F25105.3°109.4°
O23C24F26113.1°109.4°
O23C24F27107.9°109.5°
F25C24F26110.5°109.5°
F25C24F27111.7°109.5°
F26C24F27108.4°109.5°
N09C28N29129.5°120.0°
N09C28O30113.5°120.0°
N29C28O30117.0°120.0°
C28N29C31121.9°120.8°
C28N29C33124.6°120.8°
N29C31C32117.2°109.2°
C31N29C33113.4°118.4°
N29C31H58107.5°109.5°
N29C31H57107.5°109.5°
C31C32C35116.6°108.8°
C32C31H58107.5°109.6°
C32C31H57107.5°109.6°
C31C32H60107.7°109.6°
C31C32H59107.6°109.6°
N29C33C34108.8°107.2°
N29C33H61109.7°109.9°
N29C33H62109.7°109.9°
C33C34C35114.7°124.0°
C33C34C38136.9°128.0°
C34C33H61109.6°109.9°
C34C33H62109.6°110.0°
C32C35C34117.2°124.5°
C32C35N36135.1°127.8°
C35C32H60107.7°109.6°
C35C32H59107.7°109.6°
C34C35N36107.7°107.7°
C35C34C38108.4°108.0°
C35N36N37108.1°107.9°
C35N36H63125.9°126.1°
N36N37C38108.3°108.0°
N37N36H63126.0°126.0°
C34C38N37107.5°108.5°
C34C38H64126.2°126.0°
N37C38H64126.3°125.6°
H40C01H39109.5°108.6°
H41C02H42109.5°107.9°
H44C04H43109.5°109.2°
H46C05H45109.4°108.1°
H50C10H49109.5°110.9°
H48C08H47109.5°110.0°
H58C31H57109.5°109.5°
H60C32H59109.5°109.7°
H61C33H62109.4°109.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C02C01N03H40120.7°121.0°
C02C01N03H39120.7°121.0°
C02C01N03C041.7°74.4°
C01C02C06H41121.2°121.7°
C01C02C06H42121.2°121.7°
C01C02C06C0770.0°37.8°
C01C02C06C1044.4°161.3°
C02C01N03C13179.8°105.6°
C02C01H40H39117.9°118.2°
C01C02H41H42116.2°116.6°
C01C02C06H12163.2°83.2°
C01N03C04C13178.5°180.0°
C01N03C04C0570.4°62.1°
N03C01C02C0663.9°78.1°
C01N03C13C140.1°5.4°
C01N03C13O15179.6°174.6°
N03C01H40H39117.9°118.1°
N03C01C02H4157.3°160.2°
N03C01C02H42174.9°43.7°
C01N03C04H44168.5°177.7°
C01N03C04H4350.7°58.1°
N03C04C05H44121.1°120.3°
N03C04C05H43121.2°120.2°
N03C04C05C0770.0°74.3°
C04N03C13C14178.8°174.5°
C04N03C13O150.9°5.4°
C04N03C01H40122.4°164.6°
C04N03C01H39118.9°46.6°
N03C04H44H43116.3°119.6°
N03C04C05H4650.7°47.1°
N03C04C05H45169.3°164.2°
C04C05C07H46120.7°121.4°
C04C05C07H45120.7°121.5°
C04C05C07C0639.1°81.4°
C04C05C07C08161.2°161.0°
C05C04N03C13111.1°117.9°
C05C04H44H43116.3°119.6°
C04C05H46H45117.9°117.3°
C04C05C07H1180.1°42.6°
C02C06C07C0539.3°31.7°
C02C06C07C10118.5°127.5°
C02C06C07H12126.9°121.2°
C02C06C07C08168.7°151.6°
C02C06C10H12118.6°116.3°
C02C06C10N09171.3°170.2°
C06C02C01H4056.8°161.0°
C06C02C01H39175.5°42.9°
C06C02H41H42116.2°116.6°
C02C06C07H1179.3°92.3°
C02C06C10H5069.9°71.7°
C02C06C10H4952.5°51.9°
C05C07C06C08129.4°119.9°
C05C07C06H11118.6°124.0°
C05C07C08H11117.7°118.8°
C05C07C08N0995.1°123.6°
C05C07C06C1079.2°95.8°
C07C05C04H44168.8°165.4°
C07C05C04H4351.1°45.8°
C07C05H46H45117.9°117.3°
C05C07C06H12166.2°152.9°
C05C07C08H4824.2°4.3°
C05C07C08H47145.6°117.1°
C06C07C08H11111.6°116.5°
C06C07C08N0935.6°1.1°
C07C06C10H12114.1°112.0°
C07C06C10N0944.0°38.5°
C07C06C02H4151.2°159.6°
C07C06C02H42168.8°83.9°
C06C07C05H4681.5°40.0°
C06C07C05H45159.9°157.2°
C07C06C10H50162.8°156.6°
C07C06C10H4974.7°79.8°
C06C07C08H48154.9°120.5°
C06C07C08H4783.8°118.2°
C07C08N09H48119.3°119.4°
C07C08N09H47119.4°119.4°
C08C07C06C1050.2°24.1°
C07C08N09C108.3°23.5°
C07C08N09C28173.2°156.6°
C08C07C05H4640.5°77.6°
C08C07C05H4578.0°39.6°
C08C07C06H1264.4°87.2°
C07C08H48H47121.9°121.3°
C08N09C10C0623.0°38.2°
C08N09C10C28178.3°179.9°
C08N09C28N29178.4°0.7°
C08N09C28O300.7°179.2°
N09C08C07H11147.2°117.6°
C08N09C10H50141.7°156.3°
C08N09C10H4995.8°80.1°
N09C08H48H47121.9°121.2°
C06C10N09H50118.8°118.1°
C06C10N09H49118.8°118.3°
C06C10N09C28155.4°141.9°
C10C06C02H41165.6°77.0°
C10C06C02H4276.8°39.5°
C10C06C07H11162.2°140.2°
C06C10H50H49123.5°123.6°
C10N09C28N290.3°179.2°
C10N09C28O30178.9°0.9°
N09C10C06H1270.1°73.5°
N09C10H50H49123.6°123.5°
C10N09C08H48127.6°95.9°
C10N09C08H47111.1°142.8°
N03C13C14O15179.7°180.0°
N03C13C14C16154.8°175.1°
C13N03C01H4059.1°15.4°
C13N03C01H3959.5°133.4°
C13N03C04H4410.0°2.4°
C13N03C04H43127.7°121.9°
N03C13C14H5125.2°4.9°
C13C14C16H51180.0°180.0°
C13C14C16C17163.2°180.0°
C13C14C16H5216.8°0.0°
O15C13C14C1624.8°4.9°
O15C13C14H51155.2°175.1°
C14C16C17H52180.0°180.0°
C14C16C17C1812.6°180.0°
C14C16C17C22167.4°0.3°
C16C17C18C22179.9°179.7°
C16C17C18C19179.8°180.0°
C16C17C22C21179.8°179.7°
C16C17C18H530.2°0.1°
C16C17C22H560.2°0.0°
C17C16C14H5116.8°0.0°
C17C18C19H53180.0°180.0°
C17C18C19C200.1°0.0°
C18C17C22C210.1°0.6°
C18C17C16H52167.4°0.0°
C17C18C19H54179.9°180.0°
C18C17C22H56179.9°179.7°
C18C19C20H54180.0°180.0°
C18C19C20C210.4°0.0°
C19C18C17C220.2°0.3°
C18C19C20O23178.9°180.0°
C19C20C21O23178.4°180.0°
C19C20C21C220.8°0.3°
C19C20O23C24124.3°179.9°
C20C19C18H53179.9°179.9°
C19C20C21H55179.2°180.0°
C20C21C22C170.6°0.6°
C20C21C22H55180.0°179.7°
C21C20O23C2457.3°0.1°
C21C20C19H54179.6°180.0°
C20C21C22H56179.4°179.7°
C17C22C21H56180.0°179.7°
C22C17C16H5212.6°179.7°
C22C17C18H53179.8°179.8°
C17C22C21H55179.4°179.7°
C22C21C20O23179.1°179.7°
C20O23C24F25139.3°60.1°
C20O23C24F2618.7°180.0°
C20O23C24F27101.2°59.9°
O23C20C19H541.1°0.0°
O23C20C21H550.9°0.0°
O23C24F25F26122.4°119.9°
O23C24F25F27116.9°120.0°
O23C24F26F27119.6°120.1°
F25C24F26F27122.7°120.0°
N09C28N29O30179.2°179.9°
N09C28N29C312.2°170.1°
N09C28N29C33178.1°10.3°
C28N09C10H5036.6°23.8°
C28N09C10H4985.9°99.8°
C28N09C08H4853.8°84.1°
C28N09C08H4767.5°37.2°
C28N29C31C33176.4°179.6°
C28N29C31C32123.6°115.4°
C28N29C33C34110.2°135.6°
C28N29C31H58115.3°124.7°
C28N29C31H572.5°4.6°
C28N29C33H619.7°16.2°
C28N29C33H62129.9°104.9°
O30C28N29C31178.7°9.9°
O30C28N29C332.7°169.8°
N29C31C32H58121.1°119.9°
N29C31C32H57121.1°119.9°
C31N29C33C3466.0°44.0°
N29C31C32C358.6°45.4°
N29C31H58H57116.5°120.0°
N29C31C32H60129.6°165.2°
N29C31C32H59112.4°74.4°
C31N29C33H61174.0°163.4°
C31N29C33H6253.9°75.5°
C32C31N29C3352.7°64.3°
C31C32C35H60121.0°119.8°
C31C32C35H59121.0°119.9°
C31C32C35C3415.8°18.1°
C31C32C35N36164.5°162.3°
C32C31H58H57116.5°120.2°
C31C32H60H59116.8°120.4°
N29C33C34H61119.9°119.4°
N29C33C34H62119.9°119.5°
N29C33C34C3538.3°11.2°
N29C33C34C38139.5°169.0°
C33N29C31H5868.4°55.7°
C33N29C31H57173.8°175.8°
N29C33H61H62120.3°121.1°
C33C34C35C321.0°0.6°
C33C34C35C38178.4°179.9°
C33C34C35N36179.3°179.7°
C33C34C38N37178.7°179.6°
C34C33H61H62120.3°121.2°
C33C34C38H641.3°0.3°
C32C35C34N36179.8°179.7°
C32C35N36N37179.8°179.7°
C32C35C34C38179.4°179.6°
C35C32C31H58112.6°74.5°
C35C32C31H57129.7°165.3°
C35C32H60H59116.8°120.3°
C32C35N36H630.2°0.3°
C34C35N36N370.5°0.0°
C35C34C38N370.8°0.3°
C34C35C32H60105.2°137.9°
C34C35C32H59136.8°101.8°
C35C34C33H61158.3°130.6°
C35C34C33H6281.6°108.3°
C34C35N36H63179.5°180.0°
C35C34C38H64179.2°179.8°
C35N36N37H63180.0°180.0°
N36C35C34C380.8°0.2°
C35N36N37C380.1°0.1°
N36C35C32H6074.5°42.5°
N36C35C32H5943.5°77.9°
N36N37C38C340.4°0.2°
N36N37C38H64179.5°179.8°
C34C38N37H64180.0°179.9°
C38C34C33H6119.5°49.5°
C38C34C33H62100.6°71.6°
C38N37N36H63179.9°179.9°
H40C01C02H41178.0°39.2°
H40C01C02H4264.4°77.3°
H39C01C02H4163.3°78.8°
H39C01C02H4254.2°164.7°
H41C02C06H1275.6°38.5°
H42C02C06H1242.0°155.0°
H44C04C05H4670.5°73.2°
H44C04C05H4548.1°43.9°
H43C04C05H46171.8°167.2°
H43C04C05H4569.6°75.6°
H46C05C07H11159.2°164.0°
H45C05C07H1140.6°78.8°
H12C06C07H1147.6°28.9°
H12C06C10H5048.7°44.6°
H12C06C10H49171.2°168.2°
H11C07C08H4893.5°123.0°
H11C07C08H4727.8°1.7°
H52C16C14H51163.2°180.0°
H53C18C19H540.1°0.0°
H55C21C22H560.6°0.0°
H58C31C32H608.5°45.2°
H58C31C32H59126.4°165.6°
H57C31C32H60109.3°74.9°
H57C31C32H598.7°45.5°

251801

PDB entries from 2026-04-08

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