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SummaryGeometryRelated PDB entries

YCZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N12N11sing1.28Å1.36ÅAromatic
N12N13doub1.29Å1.33ÅAromatic
C22C21sing1.53Å1.53Å
N11C10doub1.31Å1.35ÅAromatic
O08C07doub1.22Å1.19Å
N13N14sing1.41Å1.35ÅAromatic
C10N14sing1.35Å1.33ÅAromatic
C10N09sing1.39Å1.43Å
C21C20sing1.53Å1.52Å
N18N17sing1.29Å1.38ÅAromatic
N18C06doub1.31Å1.33ÅAromatic
C07N09sing1.35Å1.43Å
C07C01sing1.47Å1.51Å
N17C16doub1.31Å1.35ÅAromatic
N14C15sing1.47Å1.46Å
C06C01sing1.47Å1.57ÅAromatic
C06N05sing1.38Å1.37ÅAromatic
C20S19sing1.81Å1.81Å
C01C02doub1.39Å1.47ÅAromatic
C16N05sing1.37Å1.36ÅAromatic
C16S19sing1.76Å1.81Å
N05C04sing1.36Å1.55ÅAromatic
C02C03sing1.40Å1.45ÅAromatic
C04C03doub1.35Å1.51ÅAromatic
C04C23sing1.51Å1.52Å
F25C23sing1.40Å1.36Å
C23F24sing1.40Å1.37Å
C23F26sing1.40Å1.37Å
C15H1sing1.09Å1.10Å
C15H2sing1.09Å1.10Å
C15H3sing1.09Å1.10Å
C20H4sing1.09Å1.10Å
C20H5sing1.09Å1.10Å
C21H6sing1.09Å1.10Å
C21H7sing1.09Å1.10Å
C22H8sing1.09Å1.10Å
C22H9sing1.09Å1.10Å
C22H10sing1.09Å1.10Å
C02H11sing1.08Å1.08Å
C03H12sing1.08Å1.08Å
N09H13sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N11N12N13107.6°110.3°
N12N11C10106.9°110.5°
N12N13N14109.2°106.7°
C22C21C20109.1°109.5°
C22C21H6109.6°109.5°
C22C21H7109.6°109.5°
C21C22H8109.5°109.5°
C21C22H9109.5°109.5°
C21C22H10109.5°109.5°
N11C10N14109.5°107.2°
N11C10N09127.7°126.4°
O08C07N09121.0°120.0°
O08C07C01120.0°120.0°
N13N14C10106.8°105.3°
N13N14C15128.0°127.3°
N14C10N09122.7°126.4°
C10N14C15125.2°127.4°
C10N09C07117.8°120.0°
C10N09H13121.1°120.0°
C21C20S19110.3°109.4°
C21C20H4109.3°109.4°
C21C20H5109.3°109.5°
C20C21H6109.6°109.5°
C20C21H7109.6°109.5°
N17N18C06107.3°109.8°
N18N17C16108.1°110.4°
N18C06C01131.5°133.9°
N18C06N05109.4°107.0°
N09C07C01119.0°119.9°
C07N09H13121.1°120.0°
C07C01C06120.1°120.9°
C07C01C02118.4°120.9°
N17C16N05108.5°107.2°
N17C16S19125.1°126.4°
N14C15H1109.5°109.5°
N14C15H2109.5°109.5°
N14C15H3109.5°109.4°
C01C06N05119.2°119.0°
C06C01C02121.5°118.2°
C06N05C16106.7°105.6°
C06N05C04119.9°120.4°
C20S19C16107.9°103.0°
S19C20H4109.3°109.5°
S19C20H5109.3°109.5°
C01C02C03119.4°119.4°
C01C02H11120.3°120.2°
N05C16S19126.4°126.4°
C16N05C04133.4°133.9°
N05C04C03120.7°121.6°
N05C04C23122.7°119.2°
C02C03C04119.3°121.3°
C03C02H11120.3°120.3°
C02C03H12120.3°119.4°
C03C04C23116.6°119.2°
C04C03H12120.3°119.3°
C04C23F25109.4°109.5°
C04C23F24107.6°109.4°
C04C23F26110.5°109.5°
F25C23F24108.5°109.5°
F25C23F26110.4°109.5°
F24C23F26110.3°109.5°
H1C15H2109.5°109.5°
H1C15H3109.4°109.5°
H2C15H3109.5°109.5°
H4C20H5109.5°109.5°
H6C21H7109.5°109.5°
H8C22H9109.5°109.5°
H8C22H10109.5°109.4°
H9C22H10109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N11N12N13N140.5°0.4°
N12N11C10N140.8°0.0°
N12N11C10N09177.8°179.7°
N13N12N11C100.8°0.3°
N12N13N14C100.0°0.4°
N12N13N14C15179.2°179.6°
C22C21C20H6120.0°120.0°
C22C21C20H7119.9°120.0°
C22C21C20S19115.8°180.0°
C22C21C20H4124.0°60.0°
C22C21C20H54.3°60.0°
C22C21H6H7120.2°120.0°
C21C22H8H9120.0°120.0°
C21C22H8H10120.0°120.0°
C21C22H9H10120.0°120.0°
N11C10N14N130.5°0.2°
N11C10N14N09177.2°179.7°
N11C10N09C075.0°0.3°
N11C10N14C15179.8°179.8°
N11C10N09H13175.0°179.7°
O08C07N09C101.9°0.0°
O08C07N09C01179.9°180.0°
O08C07C01C0688.5°179.7°
O08C07C01C0291.0°0.0°
O08C07N09H13178.1°179.9°
N13N14C10C15179.3°180.0°
N13N14C10N09177.7°180.0°
N13N14C15H10.0°90.0°
N13N14C15H2120.0°30.0°
N13N14C15H3120.0°150.0°
N14C10N09C07178.3°180.0°
C10N14C15H1179.1°90.0°
C10N14C15H260.9°149.9°
C10N14C15H359.1°29.9°
N14C10N09H131.7°0.0°
C10N09C07H13180.0°180.0°
C10N09C07C01178.1°180.0°
N09C10N14C153.0°0.0°
C21C20S19H4120.1°120.0°
C21C20S19H5120.1°120.0°
C21C20S19C16112.1°180.0°
C21C20H4H5119.6°120.0°
C20C21H6H7120.2°120.0°
C20C21C22H8180.0°180.0°
C20C21C22H960.0°60.0°
C20C21C22H1060.0°60.0°
N17N18C06C01179.5°180.0°
N17N18C06N050.6°0.0°
N18N17C16N050.2°0.0°
N18N17C16S19179.9°180.0°
N18C06C01C070.1°0.3°
C06N18N17C160.5°0.0°
N18C06C01N05178.9°180.0°
N18C06C01C02179.5°180.0°
N18C06N05C160.4°0.0°
N18C06N05C04179.8°179.9°
N09C07C01C0691.6°0.3°
N09C07C01C0289.0°180.0°
C07C01C06C02179.4°179.7°
C07C01C06N05178.8°179.7°
C07C01C02C03179.1°179.7°
C07C01C02H110.9°0.3°
C01C07N09H131.9°0.0°
N17C16N05C060.1°0.0°
N17C16S19C208.2°0.0°
N17C16N05S19179.7°180.0°
N17C16N05C04179.8°179.9°
N14C15H1H2120.0°120.0°
N14C15H1H3120.0°120.0°
N14C15H2H3120.0°120.0°
C01C06N05C16179.5°180.0°
C01C06N05C040.7°0.1°
C06C01C02C030.4°0.0°
C06C01C02H11179.6°180.0°
N05C06C01C020.6°0.1°
C06N05C16C04179.7°179.9°
C06N05C16S19179.6°180.0°
C06N05C04C030.6°0.1°
C06N05C04C23179.9°179.9°
C20S19C16N05172.2°180.0°
S19C20H4H5119.6°120.1°
S19C20C21H64.1°60.0°
S19C20C21H7124.2°60.0°
C01C02C03H11180.0°180.0°
C01C02C03C040.3°0.0°
C01C02C03H12179.7°180.0°
C16N05C04C03179.7°180.0°
C16N05C04C230.3°0.1°
S19C16N05C040.2°0.1°
C16S19C20H4127.8°60.0°
C16S19C20H58.0°60.0°
N05C04C03C020.4°0.0°
N05C04C03C23179.5°180.0°
N05C04C23F2556.8°60.0°
N05C04C23F24174.6°179.9°
N05C04C23F2664.9°60.0°
N05C04C03H12179.6°179.9°
C02C03C04H12180.0°180.0°
C02C03C04C23179.8°180.0°
C03C04C23F25122.6°120.0°
C03C04C23F244.9°0.0°
C03C04C23F26115.6°120.0°
C04C03C02H11179.7°180.0°
C04C23F25F24117.2°120.0°
C04C23F25F26121.8°120.0°
C04C23F24F26120.6°120.0°
C23C04C03H120.1°0.0°
F25C23F24F26121.1°120.0°
H1C15H2H3120.0°120.0°
H4C20C21H6116.0°60.0°
H4C20C21H74.1°180.0°
H5C20C21H6124.2°180.0°
H5C20C21H7115.7°60.0°
H6C21C22H860.1°60.0°
H6C21C22H960.0°180.0°
H6C21C22H10180.0°60.0°
H7C21C22H860.0°60.0°
H7C21C22H9179.9°60.0°
H7C21C22H1059.9°179.9°
H8C22H9H10120.0°119.9°
H11C02C03H120.3°0.0°

251422

PDB entries from 2026-04-01

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