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YCX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C2doub1.22Å1.23Å
N3C2sing1.33Å1.31Å
N3C4doub1.33Å1.34Å
C2N1sing1.35Å1.42Å
N4C4sing1.38Å1.35Å
C4C5sing1.41Å1.31Å
N1C1'sing1.46Å1.48Å
N1C6sing1.36Å1.35Å
C1'O4'sing1.44Å1.44Å
C1'C2'sing1.54Å1.50Å
O2'C2'sing1.43Å1.39Å
C5C6doub1.35Å1.29Å
O4'C4'sing1.44Å1.42Å
C2'C3'sing1.55Å1.52Å
C4'C3'sing1.55Å1.51Å
C4'C5'sing1.53Å1.50Å
C3'O3'sing1.43Å1.44Å
C5'O5'sing1.43Å1.42Å
O5'PAsing1.61Å1.58Å
PAO1Adoub1.48Å1.47Å
PAO2Asing1.61Å1.47Å
PAO3Bsing1.61Å1.60Å
O2BPBdoub1.48Å1.49Å
O3BPBsing1.61Å1.62Å
PBO6Gsing1.61Å1.59Å
PBO1Bsing1.61Å1.47Å
O6GC6Gsing1.43Å1.43Å
C6GC5Gsing1.53Å1.54Å
C5GO5Gsing1.43Å1.45Å
C5GC4Gsing1.53Å1.53Å
O3GC3Gsing1.43Å1.44Å
O4GC4Gsing1.43Å1.41Å
C4GC3Gsing1.53Å1.47Å
C3GC2Gsing1.53Å1.52Å
C2GO2Gsing1.43Å1.43Å
C2GC1Gsing1.53Å1.50Å
C1GO1Gsing1.43Å1.44Å
C5H1sing1.08Å1.08Å
C6H2sing1.08Å1.08Å
O1BH3sing0.97Å0.95Å
C6GH4sing1.09Å1.10Å
C6GH5sing1.09Å1.10Å
C5GH6sing1.09Å1.10Å
O5GH7sing0.97Å0.95Å
C4GH8sing1.09Å1.10Å
O4GH9sing0.97Å0.95Å
C3GH10sing1.09Å1.10Å
O3GH11sing0.97Å0.95Å
C2GH12sing1.09Å1.10Å
O2GH13sing0.97Å0.95Å
C1GH14sing1.09Å1.10Å
C1GH15sing1.09Å1.10Å
O1GH16sing0.97Å0.95Å
O2AH17sing0.97Å0.95Å
C5'H18sing1.09Å1.10Å
C5'H19sing1.09Å1.10Å
C4'H20sing1.09Å1.10Å
C3'H21sing1.09Å1.10Å
O3'H22sing0.97Å0.95Å
C2'H23sing1.09Å1.10Å
O2'H24sing0.97Å0.95Å
C1'H25sing1.09Å1.10Å
N4H26sing0.97Å1.00Å
N4H27sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C2N3117.0°119.4°
O2C2N1123.7°119.5°
C2N3C4118.5°120.7°
N3C2N1119.3°121.1°
N3C4N4116.5°120.2°
N3C4C5122.4°119.6°
C2N1C1'120.2°119.8°
C2N1C6118.5°120.3°
N4C4C5121.0°120.2°
C4N4H26120.0°120.0°
C4N4H27120.0°120.0°
C4C5C6121.2°119.0°
C4C5H1119.4°120.5°
C1'N1C6121.3°119.9°
N1C1'O4'109.8°110.4°
N1C1'C2'115.4°110.4°
N1C1'H25108.9°110.3°
N1C6C5120.0°119.3°
N1C6H2120.0°120.4°
O4'C1'C2'104.3°104.8°
C1'O4'C4'111.8°105.3°
O4'C1'H25109.5°110.4°
C1'C2'O2'104.4°110.7°
C1'C2'C3'104.7°104.1°
C1'C2'H23112.1°110.5°
C2'C1'H25108.8°110.5°
O2'C2'C3'109.4°110.5°
O2'C2'H23113.9°110.4°
C2'O2'H24109.5°114.0°
C6C5H1119.4°120.5°
C5C6H2120.0°120.3°
O4'C4'C3'102.7°104.8°
O4'C4'C5'109.0°110.4°
O4'C4'H20110.5°110.4°
C2'C3'C4'101.8°104.0°
C2'C3'O3'114.7°110.5°
C2'C3'H21108.6°110.6°
C3'C2'H23111.7°110.5°
C3'C4'C5'115.8°110.4°
C4'C3'O3'112.8°110.5°
C3'C4'H20109.2°110.4°
C4'C3'H21108.8°110.5°
C4'C5'O5'107.0°109.5°
C4'C5'H18110.1°109.5°
C4'C5'H19110.1°109.5°
C5'C4'H20109.4°110.4°
O3'C3'H21109.7°110.5°
C3'O3'H22109.5°114.0°
C5'O5'PA119.0°123.0°
O5'C5'H18110.1°109.5°
O5'C5'H19110.1°109.5°
O5'PAO1A105.6°109.5°
O5'PAO2A110.9°109.5°
O5'PAO3B111.0°109.5°
O1APAO2A104.8°109.5°
O1APAO3B117.2°109.5°
O2APAO3B107.2°109.5°
PAO2AH17109.5°114.0°
PAO3BPB128.7°134.0°
O2BPBO3B111.8°109.5°
O2BPBO6G111.8°109.5°
O2BPBO1B110.9°109.5°
O3BPBO6G111.9°109.4°
O3BPBO1B99.8°109.5°
O6GPBO1B110.1°109.5°
PBO6GC6G115.9°123.0°
PBO1BH3109.5°114.0°
O6GC6GC5G110.2°109.4°
O6GC6GH4109.3°109.5°
O6GC6GH5109.3°109.5°
C6GC5GO5G114.6°109.5°
C6GC5GC4G108.5°109.5°
C5GC6GH4109.3°109.4°
C5GC6GH5109.3°109.5°
C6GC5GH6107.3°109.4°
O5GC5GC4G110.4°109.5°
O5GC5GH6108.4°109.5°
C5GO5GH7109.5°114.0°
C5GC4GO4G106.3°109.5°
C5GC4GC3G115.1°109.5°
C4GC5GH6107.4°109.5°
C5GC4GH8109.0°109.5°
O3GC3GC4G112.4°109.5°
O3GC3GC2G106.5°109.5°
O3GC3GH10109.5°109.5°
C3GO3GH11109.5°114.0°
O4GC4GC3G105.8°109.4°
O4GC4GH8110.8°109.4°
C4GO4GH9109.5°114.0°
C4GC3GC2G110.8°109.5°
C3GC4GH8109.8°109.5°
C4GC3GH10109.0°109.5°
C3GC2GO2G105.3°109.5°
C3GC2GC1G113.7°109.5°
C2GC3GH10108.5°109.5°
C3GC2GH12108.0°109.4°
O2GC2GC1G112.5°109.5°
O2GC2GH12109.0°109.5°
C2GO2GH13109.5°114.0°
C2GC1GO1G111.4°109.5°
C1GC2GH12108.1°109.5°
C2GC1GH14109.0°109.5°
C2GC1GH15109.0°109.5°
O1GC1GH14109.0°109.5°
O1GC1GH15109.0°109.5°
C1GO1GH16109.5°114.0°
H4C6GH5109.4°109.5°
H14C1GH15109.4°109.4°
H18C5'H19109.5°109.5°
H26N4H27120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C2N3N1178.0°179.9°
O2C2N3C4178.3°179.9°
O2C2N1C1'0.3°0.1°
O2C2N1C6178.9°179.7°
C2N3C4N4180.0°180.0°
C2N3C4C50.8°0.2°
N3C2N1C1'178.2°180.0°
N3C2N1C61.0°0.2°
C4N3C2N10.2°0.0°
N3C4N4C5179.1°179.8°
N3C4C5C61.1°0.2°
N3C4C5H1178.9°180.0°
N3C4N4H260.0°0.0°
N3C4N4H27180.0°180.0°
C2N1C1'C6179.2°179.8°
C2N1C1'O4'147.3°53.8°
C2N1C1'C2'95.2°61.6°
C2N1C6C50.8°0.2°
C2N1C6H2179.2°179.7°
C2N1C1'H2527.5°176.0°
N4C4C5C6179.8°180.0°
N4C4C5H10.2°0.2°
C4N4H26H27180.0°180.0°
C4C5C6N10.2°0.0°
C4C5C6H1180.0°179.8°
C4C5C6H2179.8°179.9°
C5C4N4H26179.1°179.8°
C5C4N4H270.8°0.2°
N1C1'O4'C2'124.2°118.9°
N1C1'O4'H25119.5°122.2°
N1C1'C2'H25122.7°122.2°
N1C1'C2'O2'141.9°98.4°
C1'N1C6C5178.4°180.0°
N1C1'O4'C4'131.3°159.4°
N1C1'C2'C3'103.1°142.8°
C1'N1C6H21.6°0.0°
N1C1'C2'H2318.2°24.2°
C6N1C1'O4'31.9°126.4°
C6N1C1'C2'85.6°118.2°
N1C6C5H2180.0°179.9°
N1C6C5H1179.8°179.8°
C6N1C1'H25151.8°4.2°
O4'C1'C2'H25116.8°118.9°
O4'C1'C2'O2'97.6°142.7°
O4'C1'C2'C3'17.4°23.9°
C1'O4'C4'C3'28.6°40.5°
C1'O4'C4'C5'152.0°159.3°
C1'O4'C4'H2087.8°78.3°
O4'C1'C2'H23138.7°94.7°
C1'C2'O2'C3'111.6°114.8°
C1'C2'O2'H23122.5°122.7°
C2'C1'O4'C4'7.1°40.5°
C1'C2'C3'H23121.6°118.6°
C1'C2'C3'C4'33.9°0.0°
C1'C2'C3'O3'156.0°118.7°
C1'C2'C3'H2180.8°118.6°
C1'C2'O2'H24180.0°176.1°
O2'C2'C3'H23127.1°122.5°
O2'C2'C3'C4'77.5°118.8°
O2'C2'C3'O3'44.6°0.2°
O2'C2'C3'H21167.8°122.5°
O2'C2'C1'H2519.2°23.8°
O4'C4'C3'C2'37.5°24.0°
O4'C4'C3'C5'118.7°118.8°
O4'C4'C3'H20117.3°118.9°
O4'C4'C5'H20120.9°122.4°
O4'C4'C3'O3'161.0°142.6°
O4'C4'C5'O5'67.2°69.6°
O4'C4'C5'H1852.4°50.4°
O4'C4'C5'H19173.2°170.4°
O4'C4'C3'H2177.0°94.8°
C4'O4'C1'H25109.2°78.4°
C2'C3'C4'O3'123.5°118.6°
C2'C3'C4'H21114.5°118.8°
C2'C3'C4'C5'156.1°142.8°
C2'C3'O3'H21122.6°122.8°
C2'C3'C4'H2079.8°94.9°
C2'C3'O3'H22165.4°65.4°
C3'C2'O2'H2468.4°61.3°
C3'C2'C1'H25134.2°94.9°
C3'C4'C5'H20124.0°122.3°
C4'C3'O3'H21121.4°122.6°
C3'C4'C5'O5'47.9°175.0°
C3'C4'C5'H18167.5°65.0°
C3'C4'C5'H1971.7°55.0°
C4'C3'O3'H2278.6°180.0°
C4'C3'C2'H23155.4°118.7°
C5'C4'C3'O3'80.4°98.6°
C4'C5'O5'H18119.6°120.0°
C4'C5'O5'H19119.6°120.0°
C4'C5'O5'PA148.5°180.0°
C4'C5'H18H19121.2°120.0°
C5'C4'C3'H2141.6°24.1°
O3'C3'C4'H2043.7°23.7°
O3'C3'C2'H2382.4°122.7°
C5'O5'PAO1A37.3°55.0°
C5'O5'PAO2A150.3°65.0°
C5'O5'PAO3B90.7°175.0°
O5'C5'H18H19121.1°120.0°
O5'C5'C4'H20171.8°52.7°
O5'PAO1AO2A117.2°120.0°
O5'PAO1AO3B124.2°120.0°
O5'PAO2AO3B121.3°120.0°
O5'PAO3BPB83.3°160.0°
O5'PAO2AH17113.5°60.0°
PAO5'C5'H1891.9°60.0°
PAO5'C5'H1928.9°60.0°
O1APAO2AO3B125.2°120.0°
O1APAO3BPB38.1°40.0°
O1APAO2AH170.0°180.0°
O2APAO3BPB155.5°80.0°
PAO3BPBO2B77.7°40.0°
PAO3BPBO6G48.5°160.0°
PAO3BPBO1B165.0°80.0°
O3BPAO2AH17125.2°60.1°
O2BPBO3BO6G126.2°120.0°
O2BPBO3BO1B117.3°120.0°
O2BPBO6GO1B123.7°120.0°
O2BPBO6GC6G178.1°55.0°
O2BPBO1BH30.0°180.0°
O3BPBO6GO1B110.0°120.0°
O3BPBO6GC6G55.6°175.0°
O3BPBO1BH3118.0°60.0°
PBO6GC6GC5G171.0°179.9°
O6GPBO1BH3124.2°60.0°
PBO6GC6GH468.8°60.0°
PBO6GC6GH550.9°60.0°
O1BPBO6GC6G54.4°65.0°
O6GC6GC5GH4120.1°120.0°
O6GC6GC5GH5120.1°120.0°
O6GC6GC5GO5G53.6°65.0°
O6GC6GC5GC4G177.4°175.0°
O6GC6GH4H5119.7°120.0°
O6GC6GC5GH666.8°55.0°
C6GC5GO5GC4G122.8°120.0°
C6GC5GO5GH6119.8°120.0°
C6GC5GC4GH6115.7°120.0°
C6GC5GC4GO4G57.4°60.0°
C6GC5GC4GC3G174.1°180.0°
C5GC6GH4H5119.7°120.0°
C6GC5GO5GH7180.0°60.0°
C6GC5GC4GH862.0°60.0°
O5GC5GC4GH6118.0°120.0°
O5GC5GC4GO4G176.3°180.0°
O5GC5GC4GC3G59.6°60.0°
O5GC5GC6GH466.6°55.0°
O5GC5GC6GH5173.7°175.0°
O5GC5GC4GH864.3°60.0°
C5GC4GC3GO3G47.7°55.0°
C5GC4GO4GC3G122.8°120.0°
C5GC4GO4GH8118.3°120.0°
C5GC4GC3GH8123.4°120.1°
C5GC4GC3GC2G166.7°175.0°
C4GC5GC6GH457.3°65.0°
C4GC5GC6GH562.5°55.0°
C4GC5GO5GH757.2°60.0°
C5GC4GO4GH9180.0°60.0°
C5GC4GC3GH1074.0°65.0°
O3GC3GC4GO4G69.4°65.0°
O3GC3GC4GC2G119.1°120.0°
O3GC3GC4GH10121.6°120.0°
O3GC3GC2GH10117.8°120.0°
O3GC3GC2GO2G57.4°65.0°
O3GC3GC2GC1G178.9°55.0°
O3GC3GC4GH8171.1°175.0°
O3GC3GC2GH1258.9°175.0°
O4GC4GC3GH8119.6°120.0°
O4GC4GC3GC2G49.7°55.0°
O4GC4GC5GH658.3°60.0°
O4GC4GC3GH10169.0°175.0°
C4GC3GC2GH10119.6°120.0°
C4GC3GC2GO2G180.0°55.0°
C4GC3GC2GC1G56.3°175.0°
C3GC4GC5GH658.4°60.0°
C3GC4GO4GH957.2°60.0°
C4GC3GO3GH11180.0°60.0°
C4GC3GC2GH1263.6°65.0°
C3GC2GO2GC1G124.4°120.0°
C3GC2GO2GH12115.6°120.0°
C3GC2GC1GH12119.9°120.0°
C3GC2GC1GO1G179.4°175.0°
C2GC3GC4GH869.8°65.0°
C2GC3GO3GH1158.4°60.0°
C3GC2GO2GH13180.0°59.9°
C3GC2GC1GH1459.1°65.0°
C3GC2GC1GH1560.3°55.0°
O2GC2GC1GH12120.5°120.1°
O2GC2GC1GO1G59.8°65.0°
O2GC2GC3GH1060.4°175.0°
O2GC2GC1GH1460.5°55.0°
O2GC2GC1GH15179.9°175.0°
C2GC1GO1GH14120.3°120.0°
C2GC1GO1GH15120.3°120.0°
C1GC2GC3GH1063.3°65.0°
C1GC2GO2GH1355.6°60.0°
C2GC1GH14H15119.1°120.0°
C2GC1GO1GH16180.0°180.0°
O1GC1GC2GH1260.7°55.0°
O1GC1GH14H15119.1°120.0°
H1C5C6H20.2°0.3°
H4C6GC5GH6173.1°175.0°
H5C6GC5GH653.3°65.0°
H6C5GO5GH760.2°180.0°
H6C5GC4GH8177.8°179.9°
H8C4GO4GH961.7°180.0°
H8C4GC3GH1049.4°55.1°
H10C3GO3GH1158.7°180.0°
H10C3GC2GH12176.8°55.0°
H12C2GO2GH1364.4°179.9°
H12C2GC1GH14179.0°175.0°
H12C2GC1GH1559.6°65.0°
H14C1GO1GH1659.7°60.0°
H15C1GO1GH1659.7°60.0°
H18C5'C4'H2068.6°172.7°
H19C5'C4'H2052.2°67.3°
H20C4'C3'H21165.7°146.3°
H21C3'O3'H2242.8°57.3°
H21C3'C2'H2340.8°0.0°
H23C2'O2'H2457.5°61.2°
H23C2'C1'H25104.5°146.4°

251801

PDB entries from 2026-04-08

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