YCP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | O | doub | 1.21Å | 1.26Å | |
| C | CA | sing | 1.51Å | 1.60Å | |
| C | OXT | sing | 1.34Å | 1.40Å | |
| N | CA | sing | 1.47Å | 1.54Å | |
| N | CE | sing | 1.47Å | 1.48Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CB | CG | sing | 1.53Å | 1.58Å | |
| CD | CE | sing | 1.53Å | 1.57Å | |
| CD | CG | sing | 1.53Å | 1.56Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CD | HD | sing | 1.09Å | 1.10Å | |
| CD | HDA | sing | 1.09Å | 1.10Å | |
| CE | HE | sing | 1.09Å | 1.10Å | |
| CE | HEA | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 120.5° | 120.0° |
| O | C | OXT | 121.9° | 120.0° |
| CA | C | OXT | 117.6° | 120.0° |
| C | CA | N | 115.4° | 109.5° |
| C | CA | CB | 109.1° | 109.5° |
| C | CA | HA | 104.9° | 109.4° |
| C | OXT | HXT | 109.5° | 117.0° |
| CA | N | CE | 118.2° | 111.2° |
| N | CA | CB | 107.0° | 109.6° |
| CA | N | H | 106.7° | 111.0° |
| N | CA | HA | 107.1° | 109.5° |
| N | CE | CD | 109.9° | 109.5° |
| CE | N | H | 106.7° | 111.0° |
| N | CE | HE | 109.3° | 109.4° |
| N | CE | HEA | 109.3° | 109.4° |
| CA | CB | CG | 111.4° | 109.2° |
| CB | CA | HA | 113.6° | 109.4° |
| CA | CB | HB | 108.8° | 109.4° |
| CA | CB | HBA | 108.8° | 109.5° |
| CB | CG | CD | 123.2° | 109.2° |
| CG | CB | HB | 108.9° | 109.6° |
| CG | CB | HBA | 108.8° | 109.5° |
| CB | CG | HG | 105.1° | 109.4° |
| CB | CG | HGA | 105.2° | 109.6° |
| CE | CD | CG | 116.0° | 109.3° |
| CE | CD | HD | 107.4° | 109.5° |
| CE | CD | HDA | 107.4° | 109.5° |
| CD | CE | HE | 109.3° | 109.5° |
| CD | CE | HEA | 109.3° | 109.5° |
| CG | CD | HD | 107.3° | 109.6° |
| CG | CD | HDA | 107.4° | 109.5° |
| CD | CG | HG | 105.1° | 109.5° |
| CD | CG | HGA | 105.1° | 109.5° |
| HB | CB | HBA | 110.1° | 109.5° |
| HD | CD | HDA | 111.5° | 109.6° |
| HE | CE | HEA | 109.6° | 109.5° |
| HG | CG | HGA | 113.4° | 109.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | OXT | 179.2° | 179.8° |
| O | C | CA | N | 121.7° | 20.0° |
| O | C | CA | CB | 1.4° | 100.1° |
| O | C | CA | HA | 120.7° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| C | CA | N | CB | 121.5° | 120.0° |
| C | CA | N | HA | 116.3° | 120.0° |
| C | CA | N | CE | 49.8° | 178.2° |
| C | CA | CB | HA | 116.6° | 119.9° |
| C | CA | CB | CG | 86.3° | 179.2° |
| C | CA | N | H | 169.8° | 54.1° |
| C | CA | CB | HB | 33.7° | 59.3° |
| C | CA | CB | HBA | 153.7° | 60.8° |
| CA | C | OXT | HXT | 179.3° | 179.7° |
| OXT | C | CA | N | 57.5° | 160.2° |
| OXT | C | CA | CB | 177.9° | 79.7° |
| OXT | C | CA | HA | 60.1° | 40.2° |
| CA | N | CE | H | 120.0° | 124.1° |
| N | CA | CB | HA | 118.0° | 120.0° |
| N | CA | CB | CG | 39.1° | 59.2° |
| CA | N | CE | CD | 51.5° | 61.7° |
| N | CA | CB | HB | 159.1° | 60.8° |
| N | CA | CB | HBA | 81.0° | 179.1° |
| CA | N | CE | HE | 171.5° | 58.3° |
| CA | N | CE | HEA | 68.5° | 178.3° |
| CE | N | CA | CB | 71.7° | 61.7° |
| N | CE | CD | HE | 120.0° | 120.0° |
| N | CE | CD | HEA | 120.0° | 120.0° |
| N | CE | CD | CG | 4.8° | 59.2° |
| CE | N | CA | HA | 166.2° | 58.3° |
| N | CE | CD | HD | 115.2° | 179.2° |
| N | CE | CD | HDA | 124.8° | 60.7° |
| N | CE | HE | HEA | 119.8° | 119.9° |
| CA | CB | CG | HB | 120.0° | 119.9° |
| CA | CB | CG | HBA | 120.0° | 119.9° |
| CA | CB | CG | CD | 0.2° | 57.6° |
| CB | CA | N | H | 48.3° | 174.2° |
| CA | CB | HB | HBA | 119.2° | 120.1° |
| CA | CB | CG | HG | 120.2° | 177.5° |
| CA | CB | CG | HGA | 119.8° | 62.3° |
| CB | CG | CD | CE | 19.5° | 57.7° |
| CB | CG | CD | HG | 120.0° | 119.8° |
| CB | CG | CD | HGA | 120.0° | 120.0° |
| CG | CB | CA | HA | 157.1° | 60.9° |
| CG | CB | HB | HBA | 119.2° | 120.2° |
| CB | CG | CD | HD | 139.5° | 177.6° |
| CB | CG | CD | HDA | 100.5° | 62.2° |
| CB | CG | HG | HGA | 114.4° | 120.2° |
| CE | CD | CG | HD | 120.0° | 120.0° |
| CE | CD | CG | HDA | 120.0° | 119.9° |
| CD | CE | N | H | 68.5° | 174.1° |
| CE | CD | HD | HDA | 117.3° | 120.1° |
| CD | CE | HE | HEA | 119.8° | 120.0° |
| CE | CD | CG | HG | 139.5° | 177.5° |
| CE | CD | CG | HGA | 100.5° | 62.3° |
| CD | CG | CB | HB | 119.8° | 62.2° |
| CD | CG | CB | HBA | 120.2° | 177.6° |
| CG | CD | HD | HDA | 117.3° | 120.1° |
| CG | CD | CE | HE | 124.8° | 60.8° |
| CG | CD | CE | HEA | 115.2° | 179.1° |
| CD | CG | HG | HGA | 114.3° | 120.2° |
| H | N | CA | HA | 73.8° | 65.8° |
| H | N | CE | HE | 51.5° | 65.8° |
| H | N | CE | HEA | 171.5° | 54.2° |
| HA | CA | CB | HB | 82.9° | 179.2° |
| HA | CA | CB | HBA | 37.0° | 59.1° |
| HB | CB | CG | HG | 0.2° | 57.7° |
| HB | CB | CG | HGA | 120.2° | 177.8° |
| HBA | CB | CG | HG | 119.8° | 62.5° |
| HBA | CB | CG | HGA | 0.2° | 57.7° |
| HD | CD | CE | HE | 4.8° | 59.2° |
| HD | CD | CE | HEA | 124.8° | 60.9° |
| HD | CD | CG | HG | 100.5° | 62.5° |
| HD | CD | CG | HGA | 19.5° | 57.7° |
| HDA | CD | CE | HE | 115.2° | 179.3° |
| HDA | CD | CE | HEA | 4.8° | 59.2° |
| HDA | CD | CG | HG | 19.5° | 57.6° |
| HDA | CD | CG | HGA | 139.5° | 177.8° |
