YCM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.44Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.52Å | 1.52Å | |
| CA | HA | sing | 1.10Å | 1.11Å | |
| CB | SG | sing | 1.82Å | 1.80Å | |
| CB | HB2 | sing | 1.10Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å | |
| SG | CD | sing | 1.81Å | 1.80Å | |
| CD | CE | sing | 1.51Å | 1.51Å | |
| CD | HD2 | sing | 1.09Å | 1.11Å | |
| CD | HD3 | sing | 1.09Å | 1.11Å | |
| CE | OZ1 | doub | 1.23Å | 1.23Å | |
| CE | NZ2 | sing | 1.38Å | 1.32Å | |
| NZ2 | HZ21 | sing | 1.01Å | 1.02Å | |
| NZ2 | HZ22 | sing | 1.02Å | 1.02Å | |
| C | O | doub | 1.22Å | 1.23Å | |
| C | OXT | sing | 1.36Å | 22.58Å | |
| OXT | HXT | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 110.2° | 119.0° |
| CA | N | H2 | 111.9° | 118.9° |
| N | CA | CB | 110.2° | 112.0° |
| N | CA | C | 116.0° | 111.9° |
| N | CA | HA | 103.8° | 105.3° |
| H | N | H2 | 111.9° | 120.6° |
| CB | CA | C | 107.7° | 112.4° |
| CB | CA | HA | 112.7° | 108.8° |
| CA | CB | SG | 114.4° | 113.7° |
| CA | CB | HB2 | 110.4° | 109.9° |
| CA | CB | HB3 | 110.4° | 110.4° |
| C | CA | HA | 106.5° | 106.1° |
| CA | C | O | 119.6° | 123.8° |
| CA | C | OXT | 102.9° | 113.3° |
| SG | CB | HB2 | 110.5° | 107.3° |
| SG | CB | HB3 | 110.4° | 107.6° |
| CB | SG | CD | 104.4° | 98.1° |
| HB2 | CB | HB3 | 99.8° | 107.7° |
| SG | CD | CE | 117.7° | 109.0° |
| SG | CD | HD2 | 109.2° | 109.9° |
| SG | CD | HD3 | 109.2° | 109.4° |
| CE | CD | HD2 | 109.2° | 108.8° |
| CE | CD | HD3 | 109.2° | 111.7° |
| CD | CE | OZ1 | 120.8° | 122.6° |
| CD | CE | NZ2 | 116.4° | 113.6° |
| HD2 | CD | HD3 | 101.0° | 108.2° |
| OZ1 | CE | NZ2 | 122.7° | 123.7° |
| CE | NZ2 | HZ21 | 122.8° | 118.7° |
| CE | NZ2 | HZ22 | 116.4° | 122.7° |
| HZ21 | NZ2 | HZ22 | 120.8° | 118.7° |
| O | C | OXT | 18.1° | 123.0° |
| C | OXT | HXT | 102.8° | 111.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.2° | 166.4° |
| N | CA | CB | C | 127.5° | 127.0° |
| N | CA | CB | HA | 115.4° | 115.9° |
| N | CA | C | HA | 114.9° | 114.3° |
| N | CA | CB | SG | 55.5° | 67.2° |
| N | CA | CB | HB2 | 69.9° | 53.0° |
| N | CA | CB | HB3 | 179.3° | 171.6° |
| N | CA | C | O | 171.6° | 5.8° |
| N | CA | C | OXT | 164.0° | 174.9° |
| H | N | CA | CB | 180.0° | 114.3° |
| H | N | CA | C | 57.3° | 12.9° |
| H | N | CA | HA | 59.1° | 127.7° |
| H2 | N | CA | CB | 54.8° | 79.1° |
| H2 | N | CA | C | 177.5° | 153.7° |
| H2 | N | CA | HA | 66.1° | 39.0° |
| CB | CA | C | HA | 121.1° | 118.7° |
| CA | CB | SG | HB2 | 125.3° | 121.7° |
| CA | CB | SG | HB3 | 125.2° | 122.7° |
| CA | CB | HB2 | HB3 | 116.2° | 120.3° |
| CA | CB | SG | CD | 52.9° | 178.3° |
| CB | CA | C | O | 64.4° | 121.3° |
| CB | CA | C | OXT | 72.0° | 58.0° |
| C | CA | CB | SG | 177.1° | 59.7° |
| C | CA | CB | HB2 | 57.6° | 180.0° |
| C | CA | CB | HB3 | 51.9° | 61.4° |
| CA | C | O | OXT | 24.4° | 179.2° |
| CA | C | OXT | HXT | 180.0° | 179.3° |
| HA | CA | CB | SG | 60.0° | 176.9° |
| HA | CA | CB | HB2 | 174.7° | 62.9° |
| HA | CA | CB | HB3 | 65.2° | 55.7° |
| HA | CA | C | O | 56.7° | 120.0° |
| HA | CA | C | OXT | 49.1° | 60.7° |
| SG | CB | HB2 | HB3 | 116.3° | 115.6° |
| CB | SG | CD | CE | 52.4° | 180.0° |
| CB | SG | CD | HD2 | 72.8° | 60.9° |
| CB | SG | CD | HD3 | 177.6° | 57.7° |
| HB2 | CB | SG | CD | 178.2° | 60.0° |
| HB3 | CB | SG | CD | 72.3° | 55.6° |
| SG | CD | CE | HD2 | 125.2° | 119.8° |
| SG | CD | CE | HD3 | 125.2° | 120.9° |
| SG | CD | HD2 | HD3 | 115.0° | 119.3° |
| SG | CD | CE | OZ1 | 90.6° | 59.3° |
| SG | CD | CE | NZ2 | 88.5° | 120.2° |
| CE | CD | HD2 | HD3 | 115.0° | 121.5° |
| CD | CE | OZ1 | NZ2 | 179.1° | 179.4° |
| CD | CE | NZ2 | HZ21 | 0.9° | 179.9° |
| CD | CE | NZ2 | HZ22 | 180.0° | 0.0° |
| HD2 | CD | CE | OZ1 | 34.6° | 60.5° |
| HD2 | CD | CE | NZ2 | 146.2° | 120.0° |
| HD3 | CD | CE | OZ1 | 144.1° | 179.8° |
| HD3 | CD | CE | NZ2 | 36.7° | 0.7° |
| OZ1 | CE | NZ2 | HZ21 | 180.0° | 0.5° |
| OZ1 | CE | NZ2 | HZ22 | 0.9° | 179.5° |
| CE | NZ2 | HZ21 | HZ22 | 179.1° | 180.0° |
| O | C | OXT | HXT | 21.7° | 0.0° |
