YC6
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4 | C5 | sing | 1.55Å | 1.52Å | |
| C4 | C3 | sing | 1.54Å | 1.52Å | |
| C5 | O1 | sing | 1.43Å | 1.43Å | |
| C5 | C6 | sing | 1.55Å | 1.52Å | |
| O4 | C8 | doub | 1.22Å | 1.22Å | |
| C3 | N | sing | 1.47Å | 1.48Å | |
| C3 | O3 | sing | 1.43Å | 1.42Å | |
| O2 | C7 | sing | 1.43Å | 1.42Å | |
| C8 | N | sing | 1.34Å | 1.38Å | |
| C8 | N1 | sing | 1.34Å | 1.37Å | |
| N | C2 | sing | 1.36Å | 1.38Å | |
| O3 | C6 | sing | 1.44Å | 1.44Å | |
| C6 | C7 | sing | 1.53Å | 1.51Å | |
| N1 | C9 | sing | 1.35Å | 1.38Å | |
| C2 | C1 | doub | 1.39Å | 1.36Å | |
| C9 | C1 | sing | 1.47Å | 1.46Å | |
| C9 | O5 | doub | 1.22Å | 1.23Å | |
| C1 | C | sing | 1.46Å | 1.46Å | |
| C | H1 | sing | 1.08Å | 1.08Å | |
| C2 | H4 | sing | 1.08Å | 1.08Å | |
| C3 | H5 | sing | 1.09Å | 1.10Å | |
| C4 | H6 | sing | 1.09Å | 1.10Å | |
| C4 | H7 | sing | 1.09Å | 1.10Å | |
| C5 | H8 | sing | 1.09Å | 1.10Å | |
| C6 | H9 | sing | 1.09Å | 1.10Å | |
| C7 | H10 | sing | 1.09Å | 1.10Å | |
| C7 | H11 | sing | 1.09Å | 1.10Å | |
| N1 | H12 | sing | 0.97Å | 1.00Å | |
| O1 | H13 | sing | 0.97Å | 0.95Å | |
| O2 | H14 | sing | 0.97Å | 0.95Å | |
| C | O6 | doub | 1.21Å | 1.43Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5 | C4 | C3 | 106.2° | 102.3° |
| C4 | C5 | O1 | 109.9° | 111.1° |
| C4 | C5 | C6 | 103.9° | 101.0° |
| C5 | C4 | H6 | 110.3° | 110.8° |
| C5 | C4 | H7 | 110.2° | 110.9° |
| C4 | C5 | H8 | 110.5° | 111.1° |
| C4 | C3 | N | 113.9° | 109.9° |
| C4 | C3 | O3 | 107.4° | 107.6° |
| C4 | C3 | H5 | 108.5° | 109.9° |
| C3 | C4 | H6 | 110.3° | 110.8° |
| C3 | C4 | H7 | 110.3° | 110.9° |
| O1 | C5 | C6 | 109.8° | 111.1° |
| O1 | C5 | H8 | 111.9° | 111.0° |
| C5 | O1 | H13 | 109.5° | 114.0° |
| C5 | C6 | O3 | 106.4° | 105.1° |
| C5 | C6 | C7 | 114.0° | 110.3° |
| C6 | C5 | H8 | 110.5° | 111.2° |
| C5 | C6 | H9 | 108.6° | 110.3° |
| O4 | C8 | N | 122.9° | 118.9° |
| O4 | C8 | N1 | 122.0° | 118.9° |
| N | C3 | O3 | 108.3° | 109.8° |
| C3 | N | C8 | 117.8° | 119.2° |
| C3 | N | C2 | 120.8° | 119.2° |
| N | C3 | H5 | 109.0° | 109.8° |
| C3 | O3 | C6 | 110.2° | 110.0° |
| O3 | C3 | H5 | 109.8° | 109.8° |
| O2 | C7 | C6 | 111.4° | 109.5° |
| O2 | C7 | H10 | 109.0° | 109.4° |
| O2 | C7 | H11 | 109.0° | 109.4° |
| C7 | O2 | H14 | 109.5° | 114.1° |
| N | C8 | N1 | 115.2° | 122.3° |
| C8 | N | C2 | 121.4° | 121.5° |
| C8 | N1 | C9 | 127.6° | 120.4° |
| C8 | N1 | H12 | 116.2° | 119.8° |
| N | C2 | C1 | 122.7° | 119.3° |
| N | C2 | H4 | 118.7° | 120.3° |
| O3 | C6 | C7 | 109.1° | 110.3° |
| O3 | C6 | H9 | 109.8° | 110.4° |
| C7 | C6 | H9 | 108.9° | 110.3° |
| C6 | C7 | H10 | 109.0° | 109.5° |
| C6 | C7 | H11 | 109.0° | 109.5° |
| N1 | C9 | C1 | 114.4° | 118.5° |
| N1 | C9 | O5 | 120.1° | 120.7° |
| C9 | N1 | H12 | 116.2° | 119.8° |
| C2 | C1 | C9 | 118.8° | 118.0° |
| C2 | C1 | C | 122.8° | 121.0° |
| C1 | C2 | H4 | 118.7° | 120.4° |
| C1 | C9 | O5 | 125.5° | 120.8° |
| C9 | C1 | C | 118.4° | 121.0° |
| C1 | C | H1 | 93.1° | 120.1° |
| C1 | C | O6 | 173.9° | 120.0° |
| H1 | C | O6 | 93.1° | 119.9° |
| H6 | C4 | H7 | 109.5° | 110.9° |
| H10 | C7 | H11 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C5 | C4 | C3 | H6 | 119.5° | 118.2° |
| C5 | C4 | C3 | H7 | 119.5° | 118.2° |
| C4 | C5 | O1 | C6 | 113.7° | 111.6° |
| C4 | C5 | O1 | H8 | 123.2° | 124.2° |
| C4 | C5 | C6 | H8 | 118.5° | 117.9° |
| C5 | C4 | C3 | N | 119.5° | 140.9° |
| C5 | C4 | C3 | O3 | 0.3° | 21.3° |
| C4 | C5 | C6 | O3 | 23.0° | 36.5° |
| C4 | C5 | C6 | C7 | 143.3° | 155.4° |
| C5 | C4 | C3 | H5 | 119.0° | 98.2° |
| C5 | C4 | H6 | H7 | 121.5° | 123.6° |
| C4 | C5 | C6 | H9 | 95.1° | 82.6° |
| C4 | C5 | O1 | H13 | 180.0° | 61.4° |
| C3 | C4 | C5 | O1 | 131.2° | 152.0° |
| C3 | C4 | C5 | C6 | 13.7° | 34.1° |
| C4 | C3 | N | O3 | 119.4° | 118.1° |
| C4 | C3 | N | H5 | 121.2° | 121.0° |
| C4 | C3 | O3 | H5 | 117.8° | 119.6° |
| C4 | C3 | N | C8 | 132.8° | 60.1° |
| C4 | C3 | N | C2 | 45.7° | 119.6° |
| C4 | C3 | O3 | C6 | 15.6° | 1.8° |
| C3 | C4 | H6 | H7 | 121.5° | 123.6° |
| C3 | C4 | C5 | H8 | 104.8° | 83.8° |
| O1 | C5 | C6 | H8 | 123.9° | 124.1° |
| O1 | C5 | C6 | O3 | 140.6° | 154.4° |
| O1 | C5 | C6 | C7 | 99.1° | 86.7° |
| O1 | C5 | C4 | H6 | 109.3° | 33.9° |
| O1 | C5 | C4 | H7 | 11.8° | 89.7° |
| O1 | C5 | C6 | H9 | 22.5° | 35.4° |
| C5 | C6 | O3 | C3 | 24.7° | 24.5° |
| C5 | C6 | C7 | O2 | 60.4° | 175.0° |
| C5 | C6 | O3 | C7 | 123.4° | 118.9° |
| C5 | C6 | O3 | H9 | 117.4° | 119.0° |
| C5 | C6 | C7 | H9 | 121.5° | 122.1° |
| C6 | C5 | C4 | H6 | 133.2° | 84.0° |
| C6 | C5 | C4 | H7 | 105.7° | 152.4° |
| C5 | C6 | C7 | H10 | 59.8° | 55.0° |
| C5 | C6 | C7 | H11 | 179.3° | 65.0° |
| C6 | C5 | O1 | H13 | 66.3° | 173.0° |
| O4 | C8 | N | C3 | 1.5° | 0.4° |
| O4 | C8 | N | N1 | 179.7° | 179.9° |
| O4 | C8 | N | C2 | 179.9° | 180.0° |
| O4 | C8 | N1 | C9 | 179.6° | 180.0° |
| O4 | C8 | N1 | H12 | 0.4° | 0.1° |
| N | C3 | O3 | H5 | 118.9° | 120.9° |
| C3 | N | C8 | C2 | 178.5° | 179.7° |
| C3 | N | C8 | N1 | 178.3° | 179.8° |
| N | C3 | O3 | C6 | 107.7° | 117.8° |
| C3 | N | C2 | C1 | 178.0° | 180.0° |
| C3 | N | C2 | H4 | 2.0° | 0.0° |
| N | C3 | C4 | H6 | 121.0° | 22.7° |
| N | C3 | C4 | H7 | 0.0° | 100.9° |
| O3 | C3 | N | C8 | 107.8° | 178.2° |
| O3 | C3 | N | C2 | 73.7° | 1.4° |
| C3 | O3 | C6 | C7 | 148.1° | 143.4° |
| O3 | C3 | C4 | H6 | 119.1° | 96.9° |
| O3 | C3 | C4 | H7 | 119.8° | 139.6° |
| C3 | O3 | C6 | H9 | 92.7° | 94.5° |
| O2 | C7 | C6 | O3 | 58.3° | 69.3° |
| O2 | C7 | C6 | H10 | 120.3° | 120.0° |
| O2 | C7 | C6 | H11 | 120.3° | 119.9° |
| O2 | C7 | C6 | H9 | 178.1° | 53.0° |
| O2 | C7 | H10 | H11 | 119.1° | 119.9° |
| N | C8 | N1 | C9 | 0.1° | 0.1° |
| C8 | N | C2 | C1 | 0.4° | 0.3° |
| C8 | N | C2 | H4 | 179.6° | 179.7° |
| C8 | N | C3 | H5 | 11.6° | 60.9° |
| N | C8 | N1 | H12 | 179.9° | 180.0° |
| N1 | C8 | N | C2 | 0.2° | 0.1° |
| C8 | N1 | C9 | H12 | 180.0° | 179.9° |
| C8 | N1 | C9 | C1 | 0.2° | 0.2° |
| C8 | N1 | C9 | O5 | 179.5° | 179.7° |
| N | C2 | C1 | H4 | 180.0° | 180.0° |
| N | C2 | C1 | C9 | 0.3° | 0.4° |
| N | C2 | C1 | C | 179.5° | 180.0° |
| C2 | N | C3 | H5 | 166.9° | 119.4° |
| O3 | C6 | C7 | H9 | 119.8° | 122.2° |
| C6 | O3 | C3 | H5 | 133.4° | 121.3° |
| O3 | C6 | C5 | H8 | 95.5° | 81.5° |
| O3 | C6 | C7 | H10 | 178.5° | 170.7° |
| O3 | C6 | C7 | H11 | 62.0° | 50.7° |
| C7 | C6 | C5 | H8 | 24.8° | 37.4° |
| C6 | C7 | H10 | H11 | 119.2° | 120.1° |
| C6 | C7 | O2 | H14 | 180.0° | 180.0° |
| N1 | C9 | C1 | C2 | 0.0° | 0.4° |
| N1 | C9 | C1 | O5 | 179.7° | 179.9° |
| N1 | C9 | C1 | C | 179.8° | 180.0° |
| C2 | C1 | C9 | C | 179.7° | 179.6° |
| C2 | C1 | C9 | O5 | 179.7° | 179.5° |
| C2 | C1 | C | H1 | 104.9° | 0.0° |
| C2 | C1 | C | O6 | 75.1° | 180.0° |
| C9 | C1 | C | H1 | 74.8° | 179.5° |
| C9 | C1 | C2 | H4 | 179.7° | 179.6° |
| C1 | C9 | N1 | H12 | 179.8° | 179.8° |
| C9 | C1 | C | O6 | 105.2° | 0.5° |
| O5 | C9 | C1 | C | 0.0° | 0.1° |
| O5 | C9 | N1 | H12 | 0.5° | 0.2° |
| C1 | C | H1 | O6 | 180.0° | 180.0° |
| C | C1 | C2 | H4 | 0.6° | 0.0° |
| H5 | C3 | C4 | H6 | 0.5° | 143.6° |
| H5 | C3 | C4 | H7 | 121.5° | 20.1° |
| H6 | C4 | C5 | H8 | 14.7° | 158.0° |
| H7 | C4 | C5 | H8 | 135.8° | 34.4° |
| H8 | C5 | C6 | H9 | 146.4° | 159.5° |
| H8 | C5 | O1 | H13 | 56.8° | 62.8° |
| H9 | C6 | C7 | H10 | 61.6° | 67.1° |
| H9 | C6 | C7 | H11 | 57.8° | 172.9° |
| H10 | C7 | O2 | H14 | 59.7° | 59.9° |
| H11 | C7 | O2 | H14 | 59.7° | 60.0° |
