Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

YBZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6C5doub1.38Å1.39ÅAromatic
C6C7sing1.38Å1.36ÅAromatic
C5C4sing1.40Å1.40ÅAromatic
C7C8doub1.38Å1.38ÅAromatic
S1C3sing1.71Å1.67ÅAromatic
S1C2sing1.76Å1.71ÅAromatic
C4C3sing1.48Å1.46Å
C4C9doub1.40Å1.39ÅAromatic
C1C2sing1.47Å1.46Å
C1N3doub1.30Å1.31Å
C8C9sing1.38Å1.39ÅAromatic
C3N2doub1.31Å1.31ÅAromatic
C2N1doub1.31Å1.33ÅAromatic
N2N1sing1.26Å1.38ÅAromatic
C1H1sing1.08Å1.08Å
C5H2sing1.08Å1.08Å
C6H3sing1.08Å1.08Å
C7H4sing1.08Å1.08Å
C8H5sing1.08Å1.08Å
C9H6sing1.08Å1.08Å
N3H7sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5C6C7119.4°120.1°
C6C5C4121.1°119.9°
C6C5H2119.5°120.1°
C5C6H3120.3°120.0°
C6C7C8120.0°120.3°
C7C6H3120.3°119.9°
C6C7H4120.0°119.9°
C5C4C3118.1°120.1°
C5C4C9119.2°119.7°
C4C5H2119.5°120.0°
C7C8C9121.5°120.1°
C8C7H4120.0°119.8°
C7C8H5119.2°120.0°
C3S1C287.9°89.5°
S1C3C4115.4°125.6°
S1C3N2114.8°108.9°
S1C2C1111.3°126.1°
S1C2N1113.8°107.7°
C3C4C9122.5°120.2°
C4C3N2129.8°125.5°
C4C9C8118.8°119.9°
C4C9H6120.6°120.1°
C2C1N3121.6°120.0°
C1C2N1134.9°126.1°
C2C1H1119.2°120.0°
N3C1H1119.2°120.0°
C1N3H7112.0°120.0°
C9C8H5119.2°119.9°
C8C9H6120.6°120.0°
C3N2N1112.5°117.6°
C2N1N2110.4°116.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5C6C7H3180.0°180.0°
C6C5C4H2180.0°179.9°
C5C6C7C80.3°0.0°
C6C5C4C3177.4°180.0°
C6C5C4C92.6°0.2°
C5C6C7H4179.7°179.9°
C7C6C5C41.4°0.1°
C6C7C8H4180.0°180.0°
C6C7C8C90.5°0.3°
C7C6C5H2178.6°180.0°
C6C7C8H5179.6°180.0°
C5C4C3S121.7°0.5°
C5C4C3C9174.6°179.8°
C5C4C9C82.6°0.5°
C5C4C3N2157.7°179.8°
C4C5C6H3178.6°179.9°
C5C4C9H6177.3°179.7°
C7C8C9C41.6°0.6°
C7C8C9H5180.0°179.7°
C8C7C6H3179.7°180.0°
C7C8C9H6178.4°179.7°
S1C3C4N2179.4°179.7°
S1C3C4C9152.9°179.7°
C3S1C2C1173.1°180.0°
C3S1C2N15.7°0.3°
S1C3N2N17.7°0.3°
C2S1C3C4171.9°179.9°
S1C2C1N1178.5°179.6°
S1C2C1N3133.3°179.7°
C2S1C3N27.6°0.3°
S1C2N1N22.6°0.2°
S1C2C1H146.7°0.6°
C3C4C9C8177.2°179.7°
C4C3N2N1171.7°179.9°
C3C4C5H22.6°0.1°
C3C4C9H62.8°0.1°
C4C9C8H6180.0°179.7°
C9C4C3N227.7°0.0°
C9C4C5H2177.4°179.8°
C4C9C8H5178.4°179.8°
C2C1N3H1180.0°179.7°
C1C2N1N2175.8°179.9°
C2C1N3H7180.0°180.0°
N3C1C2N148.3°0.1°
C9C8C7H4179.6°179.7°
C3N2N1C23.1°0.0°
N1C2C1H1131.7°179.8°
H1C1N3H70.0°0.2°
H2C5C6H31.4°0.0°
H3C6C7H40.3°0.0°
H4C7C8H50.4°0.1°
H5C8C9H61.6°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon