YBV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CL04	C03	sing	1.74Å	1.75Å
O01	C02	doub	1.22Å	1.20Å
C02	C03	sing	1.40Å	1.48Å
C02	N13	sing	1.35Å	1.46Å
C03	C05	doub	1.38Å	1.45Å
C14	N13	sing	1.46Å	1.44Å
N13	N12	sing	1.40Å	1.45Å
C05	N06	sing	1.39Å	1.45Å
C05	C11	sing	1.41Å	1.49Å
N06	C07	sing	1.47Å	1.45Å
C08	C07	sing	1.54Å	1.48Å
C08	N09	sing	1.48Å	1.48Å
N12	C11	doub	1.30Å	1.47Å
C07	C10	sing	1.54Å	1.47Å
N09	C10	sing	1.48Å	1.47Å
C11	H1	sing	1.08Å	1.08Å
C14	H2	sing	1.09Å	1.10Å
C14	H3	sing	1.09Å	1.10Å
C14	H4	sing	1.09Å	1.10Å
C07	H6	sing	1.09Å	1.10Å
C08	H7	sing	1.09Å	1.10Å
C08	H8	sing	1.09Å	1.10Å
C10	H9	sing	1.09Å	1.10Å
C10	H10	sing	1.09Å	1.10Å
N06	H11	sing	0.97Å	1.00Å
N09	H12	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CL04	C03	C02	119.1°	120.5°
CL04	C03	C05	119.3°	120.5°
O01	C02	C03	121.7°	120.2°
O01	C02	N13	120.7°	120.2°
C03	C02	N13	117.7°	119.6°
C02	C03	C05	121.6°	119.0°
C02	N13	C14	118.2°	119.8°
C02	N13	N12	121.8°	120.5°
C03	C05	N06	120.8°	120.3°
C03	C05	C11	119.8°	119.4°
C14	N13	N12	120.0°	119.7°
N13	C14	H2	109.5°	109.5°
N13	C14	H3	109.5°	109.5°
N13	C14	H4	109.5°	109.5°
N13	N12	C11	120.2°	121.0°
N06	C05	C11	119.4°	120.3°
C05	N06	C07	118.7°	120.0°
C05	N06	H11	107.1°	120.0°
C05	C11	N12	118.9°	120.4°
C05	C11	H1	120.5°	119.8°
N06	C07	C08	114.5°	113.8°
N06	C07	C10	112.5°	113.7°
N06	C07	H6	112.9°	113.0°
C07	N06	H11	107.1°	120.1°
C07	C08	N09	88.7°	86.2°
C08	C07	C10	89.7°	86.3°
C08	C07	H6	112.6°	113.8°
C07	C08	H7	114.4°	113.8°
C07	C08	H8	114.4°	113.8°
C08	N09	C10	89.5°	90.7°
N09	C08	H7	114.4°	113.7°
N09	C08	H8	114.4°	113.7°
C08	N09	H12	114.2°	111.0°
N12	C11	H1	120.5°	119.7°
C07	C10	N09	89.2°	86.2°
C10	C07	H6	112.7°	113.7°
C07	C10	H9	114.3°	113.8°
C07	C10	H10	114.3°	113.7°
N09	C10	H9	114.3°	113.8°
N09	C10	H10	114.3°	113.9°
C10	N09	H12	114.2°	111.0°
H2	C14	H3	109.5°	109.4°
H2	C14	H4	109.5°	109.5°
H3	C14	H4	109.4°	109.5°
H7	C08	H8	109.5°	113.0°
H9	C10	H10	109.4°	113.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CL04	C03	C02	O01	1.5°	0.2°
CL04	C03	C02	C05	179.4°	179.7°
CL04	C03	C02	N13	179.7°	180.0°
CL04	C03	C05	N06	0.5°	0.3°
CL04	C03	C05	C11	179.7°	179.7°
O01	C02	C03	N13	178.8°	179.8°
O01	C02	C03	C05	179.1°	179.9°
O01	C02	N13	C14	1.0°	0.0°
O01	C02	N13	N12	179.0°	179.9°
C03	C02	N13	C14	179.8°	179.8°
C03	C02	N13	N12	0.2°	0.3°
C02	C03	C05	N06	179.9°	180.0°
C02	C03	C05	C11	0.3°	0.0°
N13	C02	C03	C05	0.3°	0.3°
C02	N13	C14	N12	180.0°	179.9°
C02	N13	N12	C11	0.1°	0.1°
C02	N13	C14	H2	179.9°	90.0°
C02	N13	C14	H3	59.9°	150.0°
C02	N13	C14	H4	60.0°	30.0°
C03	C05	N06	C11	179.8°	180.0°
C03	C05	N06	C07	167.3°	180.0°
C03	C05	C11	N12	0.2°	0.2°
C03	C05	C11	H1	179.8°	180.0°
C03	C05	N06	H11	46.0°	0.0°
C14	N13	N12	C11	179.9°	180.0°
N13	C14	H2	H3	120.0°	120.0°
N13	C14	H2	H4	120.0°	120.0°
N13	C14	H3	H4	120.0°	120.0°
N13	N12	C11	C05	0.1°	0.2°
N13	N12	C11	H1	179.9°	180.0°
N12	N13	C14	H2	0.0°	90.0°
N12	N13	C14	H3	120.0°	29.9°
N12	N13	C14	H4	120.0°	150.0°
C05	N06	C07	H11	121.3°	180.0°
C05	N06	C07	C08	128.5°	108.2°
N06	C05	C11	N12	180.0°	179.8°
C05	N06	C07	C10	131.0°	155.0°
N06	C05	C11	H1	0.0°	0.0°
C05	N06	C07	H6	2.1°	23.5°
C11	C05	N06	C07	12.5°	0.0°
C05	C11	N12	H1	180.0°	179.8°
C11	C05	N06	H11	133.8°	180.0°
N06	C07	C08	C10	114.7°	114.3°
N06	C07	C08	H6	130.7°	131.3°
N06	C07	C08	N09	127.9°	90.6°
N06	C07	C10	H6	129.0°	131.2°
N06	C07	C10	N09	129.7°	90.7°
N06	C07	C08	H7	115.9°	155.1°
N06	C07	C08	H8	11.6°	23.7°
N06	C07	C10	H9	13.2°	23.6°
N06	C07	C10	H10	114.0°	154.8°
C07	C08	N09	H7	116.3°	114.4°
C07	C08	N09	H8	116.3°	114.4°
C08	C07	C10	H6	114.4°	114.4°
C07	C08	N09	C10	13.1°	24.7°
C07	C08	H7	H8	129.9°	131.8°
C08	C07	C10	H9	103.3°	138.1°
C08	C07	C10	H10	129.5°	90.7°
C08	C07	N06	H11	7.2°	71.7°
C07	C08	N09	H12	103.4°	137.5°
C08	N09	C10	H12	116.5°	112.9°
N09	C08	C07	H6	101.4°	138.1°
N09	C08	H7	H8	129.8°	131.6°
C08	N09	C10	H9	103.3°	139.0°
C08	N09	C10	H10	129.6°	89.6°
C07	C10	N09	H9	116.4°	114.3°
C07	C10	N09	H10	116.4°	114.3°
C10	C07	C08	H7	129.4°	90.6°
C10	C07	C08	H8	103.2°	138.0°
C07	C10	H9	H10	129.7°	131.6°
C10	C07	N06	H11	107.7°	25.0°
C07	C10	N09	H12	103.3°	137.6°
N09	C10	C07	H6	101.3°	138.1°
C10	N09	C08	H7	129.4°	89.7°
C10	N09	C08	H8	103.3°	139.1°
N09	C10	H9	H10	129.6°	131.9°
H2	C14	H3	H4	120.0°	119.9°
H6	C07	C08	H7	14.8°	23.8°
H6	C07	C08	H8	142.3°	107.6°
H6	C07	C10	H9	142.3°	107.5°
H6	C07	C10	H10	15.1°	23.7°
H6	C07	N06	H11	123.4°	156.6°
H7	C08	N09	H12	12.9°	23.2°
H8	C08	N09	H12	140.3°	108.1°
H9	C10	N09	H12	140.3°	108.1°
H10	C10	N09	H12	13.1°	23.3°

Release date:	2022-08-10
Definition date:	2021-02-17
Last modified:	2022-08-05
Release status:	REL
Processing site:	RCSB
Derived from:	7LRO