YBT
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
Y1 | O1 | sing | 2.39Å | 2.39Å | |
Y1 | O2 | sing | 2.37Å | 2.37Å | |
Y1 | O4 | sing | 2.37Å | 2.37Å | |
Y1 | O5 | sing | 2.37Å | 2.37Å | |
Y1 | N1 | sing | 2.68Å | 2.68Å | |
O1 | C2 | sing | 1.48Å | 1.48Å | |
O1 | HO1 | sing | 0.95Å | 0.95Å | |
O2 | C3 | sing | 1.45Å | 1.45Å | |
O2 | HO2 | sing | 0.95Å | 0.95Å | |
O3 | C4 | sing | 1.43Å | 1.43Å | |
O3 | HO3 | sing | 0.95Å | 0.95Å | |
O4 | C6 | sing | 1.47Å | 1.47Å | |
O4 | HO4 | sing | 0.95Å | 0.95Å | |
O5 | C8 | sing | 1.45Å | 1.45Å | |
O5 | HO5 | sing | 0.95Å | 0.95Å | |
N1 | C1 | sing | 1.58Å | 1.58Å | |
N1 | C5 | sing | 1.53Å | 1.53Å | |
N1 | C7 | sing | 1.53Å | 1.53Å | |
C1 | C2 | sing | 1.52Å | 1.52Å | |
C1 | C3 | sing | 1.57Å | 1.57Å | |
C1 | C4 | sing | 1.55Å | 1.55Å | |
C2 | H21 | sing | 1.10Å | 1.10Å | |
C2 | H22 | sing | 1.10Å | 1.10Å | |
C3 | H31 | sing | 1.10Å | 1.10Å | |
C3 | H32 | sing | 1.10Å | 1.10Å | |
C4 | H41 | sing | 1.10Å | 1.10Å | |
C4 | H42 | sing | 1.10Å | 1.10Å | |
C5 | C6 | sing | 1.50Å | 1.50Å | |
C5 | H51 | sing | 1.10Å | 1.10Å | |
C5 | H52 | sing | 1.10Å | 1.10Å | |
C6 | H61 | sing | 1.10Å | 1.10Å | |
C6 | H62 | sing | 1.10Å | 1.10Å | |
C7 | C8 | sing | 1.52Å | 1.52Å | |
C7 | H71 | sing | 1.10Å | 1.10Å | |
C7 | H72 | sing | 1.10Å | 1.10Å | |
C8 | H81 | sing | 1.10Å | 1.10Å | |
C8 | H82 | sing | 1.10Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1 | Y1 | O2 | 70.7° | 70.7° |
O1 | Y1 | O4 | 132.0° | 132.0° |
O1 | Y1 | O5 | 83.2° | 83.2° |
O1 | Y1 | N1 | 66.3° | 66.3° |
Y1 | O1 | C2 | 122.7° | 122.7° |
Y1 | O1 | HO1 | 106.1° | 106.1° |
O2 | Y1 | O4 | 83.7° | 83.7° |
O2 | Y1 | O5 | 134.8° | 134.8° |
O2 | Y1 | N1 | 67.0° | 67.0° |
Y1 | O2 | C3 | 124.6° | 124.6° |
Y1 | O2 | HO2 | 105.6° | 105.6° |
O4 | Y1 | O5 | 87.6° | 87.6° |
O4 | Y1 | N1 | 66.4° | 66.4° |
Y1 | O4 | C6 | 119.8° | 119.8° |
Y1 | O4 | HO4 | 106.8° | 106.8° |
O5 | Y1 | N1 | 68.9° | 68.9° |
Y1 | O5 | C8 | 120.3° | 120.3° |
Y1 | O5 | HO5 | 106.7° | 106.7° |
Y1 | N1 | C1 | 100.9° | 100.9° |
Y1 | N1 | C5 | 111.7° | 111.7° |
Y1 | N1 | C7 | 106.0° | 106.0° |
C2 | O1 | HO1 | 106.1° | 106.1° |
O1 | C2 | C1 | 110.9° | 110.9° |
O1 | C2 | H21 | 109.1° | 109.1° |
O1 | C2 | H22 | 109.1° | 109.1° |
C3 | O2 | HO2 | 105.5° | 105.5° |
O2 | C3 | C1 | 109.1° | 109.1° |
O2 | C3 | H31 | 109.6° | 109.6° |
O2 | C3 | H32 | 109.6° | 109.6° |
C4 | O3 | HO3 | 109.5° | 109.5° |
O3 | C4 | C1 | 112.1° | 112.1° |
O3 | C4 | H41 | 108.8° | 108.8° |
O3 | C4 | H42 | 108.8° | 108.8° |
C6 | O4 | HO4 | 106.8° | 106.8° |
O4 | C6 | C5 | 110.2° | 110.2° |
O4 | C6 | H61 | 109.3° | 109.3° |
O4 | C6 | H62 | 109.3° | 109.3° |
C8 | O5 | HO5 | 106.7° | 106.7° |
O5 | C8 | C7 | 108.3° | 108.3° |
O5 | C8 | H81 | 109.7° | 109.7° |
O5 | C8 | H82 | 109.8° | 109.7° |
C1 | N1 | C5 | 115.8° | 115.8° |
C1 | N1 | C7 | 113.7° | 113.7° |
N1 | C1 | C2 | 110.7° | 110.7° |
N1 | C1 | C3 | 106.9° | 106.9° |
N1 | C1 | C4 | 116.6° | 116.6° |
C5 | N1 | C7 | 108.2° | 108.2° |
N1 | C5 | C6 | 113.6° | 113.6° |
N1 | C5 | H51 | 108.4° | 108.4° |
N1 | C5 | H52 | 108.4° | 108.4° |
N1 | C7 | C8 | 111.9° | 111.9° |
N1 | C7 | H71 | 108.9° | 108.9° |
N1 | C7 | H72 | 108.9° | 108.9° |
C2 | C1 | C3 | 106.5° | 106.5° |
C2 | C1 | C4 | 111.0° | 111.0° |
C1 | C2 | H21 | 109.1° | 109.1° |
C1 | C2 | H22 | 109.1° | 109.1° |
C3 | C1 | C4 | 104.4° | 104.4° |
C1 | C3 | H31 | 109.6° | 109.6° |
C1 | C3 | H32 | 109.6° | 109.6° |
C1 | C4 | H41 | 108.8° | 108.8° |
C1 | C4 | H42 | 108.8° | 108.8° |
H21 | C2 | H22 | 109.5° | 109.5° |
H31 | C3 | H32 | 109.5° | 109.5° |
H41 | C4 | H42 | 109.5° | 109.5° |
C6 | C5 | H51 | 108.4° | 108.4° |
C6 | C5 | H52 | 108.4° | 108.4° |
C5 | C6 | H61 | 109.3° | 109.3° |
C5 | C6 | H62 | 109.3° | 109.3° |
H51 | C5 | H52 | 109.5° | 109.5° |
H61 | C6 | H62 | 109.4° | 109.5° |
C8 | C7 | H71 | 108.9° | 108.8° |
C8 | C7 | H72 | 108.8° | 108.8° |
C7 | C8 | H81 | 109.8° | 109.8° |
C7 | C8 | H82 | 109.7° | 109.7° |
H71 | C7 | H72 | 109.5° | 109.5° |
H81 | C8 | H82 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1 | Y1 | O2 | O4 | 138.7° | 138.7° |
O1 | Y1 | O2 | O5 | 58.4° | 58.4° |
O1 | Y1 | O2 | N1 | 71.7° | 71.7° |
O1 | Y1 | O4 | O5 | 78.6° | 78.6° |
O1 | Y1 | O4 | N1 | 10.6° | 10.6° |
O1 | Y1 | O5 | N1 | 67.2° | 67.2° |
Y1 | O1 | C2 | HO1 | 121.8° | 121.8° |
O1 | Y1 | O2 | C3 | 56.5° | 56.5° |
O1 | Y1 | O2 | HO2 | 65.6° | 65.6° |
O1 | Y1 | O4 | C6 | 20.9° | 20.9° |
O1 | Y1 | O4 | HO4 | 142.4° | 142.4° |
O1 | Y1 | O5 | C8 | 84.1° | 84.1° |
O1 | Y1 | O5 | HO5 | 154.4° | 154.4° |
O1 | Y1 | N1 | C1 | 40.0° | 40.0° |
O1 | Y1 | N1 | C5 | 163.7° | 163.7° |
O1 | Y1 | N1 | C7 | 78.7° | 78.7° |
Y1 | O1 | C2 | C1 | 2.0° | 2.0° |
Y1 | O1 | C2 | H21 | 122.2° | 122.2° |
Y1 | O1 | C2 | H22 | 118.2° | 118.2° |
O2 | Y1 | O4 | O5 | 135.6° | 135.6° |
O2 | Y1 | O4 | N1 | 67.6° | 67.6° |
O2 | Y1 | O5 | N1 | 13.1° | 13.1° |
O2 | Y1 | O1 | C2 | 47.5° | 47.5° |
O2 | Y1 | O1 | HO1 | 169.3° | 169.3° |
Y1 | O2 | C3 | HO2 | 122.0° | 122.0° |
O2 | Y1 | O4 | C6 | 36.1° | 36.1° |
O2 | Y1 | O4 | HO4 | 85.4° | 85.4° |
O2 | Y1 | O5 | C8 | 30.0° | 30.0° |
O2 | Y1 | O5 | HO5 | 151.5° | 151.5° |
O2 | Y1 | N1 | C1 | 38.2° | 38.2° |
O2 | Y1 | N1 | C5 | 85.5° | 85.5° |
O2 | Y1 | N1 | C7 | 156.9° | 156.9° |
Y1 | O2 | C3 | C1 | 12.9° | 12.9° |
Y1 | O2 | C3 | H31 | 132.9° | 132.9° |
Y1 | O2 | C3 | H32 | 107.0° | 107.0° |
O4 | Y1 | O5 | N1 | 65.6° | 65.6° |
O4 | Y1 | O1 | C2 | 14.5° | 14.5° |
O4 | Y1 | O1 | HO1 | 107.4° | 107.4° |
O4 | Y1 | O2 | C3 | 82.2° | 82.2° |
O4 | Y1 | O2 | HO2 | 155.8° | 155.8° |
Y1 | O4 | C6 | HO4 | 121.5° | 121.5° |
O4 | Y1 | O5 | C8 | 48.6° | 48.6° |
O4 | Y1 | O5 | HO5 | 72.8° | 72.8° |
O4 | Y1 | N1 | C1 | 131.3° | 131.3° |
O4 | Y1 | N1 | C5 | 7.7° | 7.7° |
O4 | Y1 | N1 | C7 | 109.9° | 109.9° |
Y1 | O4 | C6 | C5 | 51.3° | 51.3° |
Y1 | O4 | C6 | H61 | 68.8° | 68.8° |
Y1 | O4 | C6 | H62 | 171.4° | 171.4° |
O5 | Y1 | O1 | C2 | 95.0° | 95.0° |
O5 | Y1 | O1 | HO1 | 26.8° | 26.8° |
O5 | Y1 | O2 | C3 | 2.0° | 2.0° |
O5 | Y1 | O2 | HO2 | 124.0° | 124.0° |
O5 | Y1 | O4 | C6 | 99.5° | 99.5° |
O5 | Y1 | O4 | HO4 | 139.0° | 139.0° |
Y1 | O5 | C8 | HO5 | 121.5° | 121.5° |
O5 | Y1 | N1 | C1 | 131.8° | 131.8° |
O5 | Y1 | N1 | C5 | 104.6° | 104.6° |
O5 | Y1 | N1 | C7 | 13.1° | 13.1° |
Y1 | O5 | C8 | C7 | 44.7° | 44.7° |
Y1 | O5 | C8 | H81 | 75.1° | 75.1° |
Y1 | O5 | C8 | H82 | 164.5° | 164.5° |
N1 | Y1 | O1 | C2 | 25.1° | 25.1° |
N1 | Y1 | O1 | HO1 | 96.7° | 96.7° |
N1 | Y1 | O2 | C3 | 15.2° | 15.2° |
N1 | Y1 | O2 | HO2 | 137.2° | 137.2° |
N1 | Y1 | O4 | C6 | 31.5° | 31.5° |
N1 | Y1 | O4 | HO4 | 153.0° | 153.0° |
N1 | Y1 | O5 | C8 | 16.9° | 16.9° |
N1 | Y1 | O5 | HO5 | 138.4° | 138.4° |
Y1 | N1 | C1 | C5 | 120.7° | 120.7° |
Y1 | N1 | C1 | C7 | 113.0° | 113.0° |
Y1 | N1 | C5 | C7 | 116.3° | 116.3° |
Y1 | N1 | C1 | C2 | 56.4° | 56.4° |
Y1 | N1 | C1 | C3 | 59.1° | 59.1° |
Y1 | N1 | C1 | C4 | 175.4° | 175.4° |
Y1 | N1 | C5 | C6 | 14.1° | 14.1° |
Y1 | N1 | C5 | H51 | 106.5° | 106.5° |
Y1 | N1 | C5 | H52 | 134.7° | 134.7° |
Y1 | N1 | C7 | C8 | 40.4° | 40.4° |
Y1 | N1 | C7 | H71 | 80.0° | 79.9° |
Y1 | N1 | C7 | H72 | 160.7° | 160.7° |
O1 | C2 | C1 | N1 | 40.4° | 40.4° |
O1 | C2 | C1 | H21 | 120.2° | 120.2° |
O1 | C2 | C1 | H22 | 120.2° | 120.2° |
O1 | C2 | C1 | C3 | 75.4° | 75.4° |
O1 | C2 | C1 | C4 | 171.6° | 171.6° |
O1 | C2 | H21 | H22 | 119.4° | 119.4° |
HO1 | O1 | C2 | C1 | 119.8° | 119.8° |
HO1 | O1 | C2 | H21 | 0.4° | 0.4° |
HO1 | O1 | C2 | H22 | 120.0° | 120.0° |
O2 | C3 | C1 | N1 | 51.0° | 51.0° |
O2 | C3 | C1 | C2 | 67.3° | 67.3° |
O2 | C3 | C1 | H31 | 120.0° | 120.0° |
O2 | C3 | C1 | H32 | 119.9° | 119.9° |
O2 | C3 | C1 | C4 | 175.2° | 175.2° |
O2 | C3 | H31 | H32 | 120.2° | 120.2° |
HO2 | O2 | C3 | C1 | 109.1° | 109.1° |
HO2 | O2 | C3 | H31 | 10.8° | 10.8° |
HO2 | O2 | C3 | H32 | 131.0° | 131.0° |
O3 | C4 | C1 | N1 | 62.0° | 62.0° |
O3 | C4 | C1 | C2 | 66.0° | 66.0° |
O3 | C4 | C1 | C3 | 179.6° | 179.6° |
O3 | C4 | C1 | H41 | 120.4° | 120.4° |
O3 | C4 | C1 | H42 | 120.4° | 120.4° |
O3 | C4 | H41 | H42 | 118.8° | 118.8° |
HO3 | O3 | C4 | C1 | 180.0° | 180.0° |
HO3 | O3 | C4 | H41 | 59.6° | 59.7° |
HO3 | O3 | C4 | H42 | 59.6° | 59.6° |
O4 | C6 | C5 | N1 | 39.2° | 39.2° |
O4 | C6 | C5 | H61 | 120.1° | 120.1° |
O4 | C6 | C5 | H62 | 120.1° | 120.1° |
O4 | C6 | C5 | H51 | 81.4° | 81.4° |
O4 | C6 | C5 | H52 | 159.9° | 159.9° |
O4 | C6 | H61 | H62 | 119.7° | 119.7° |
HO4 | O4 | C6 | C5 | 172.7° | 172.7° |
HO4 | O4 | C6 | H61 | 52.6° | 52.7° |
HO4 | O4 | C6 | H62 | 67.2° | 67.2° |
O5 | C8 | C7 | N1 | 56.3° | 56.3° |
O5 | C8 | C7 | H81 | 119.8° | 119.8° |
O5 | C8 | C7 | H82 | 119.8° | 119.8° |
O5 | C8 | C7 | H71 | 64.1° | 64.1° |
O5 | C8 | C7 | H72 | 176.6° | 176.6° |
O5 | C8 | H81 | H82 | 120.5° | 120.5° |
HO5 | O5 | C8 | C7 | 166.2° | 166.2° |
HO5 | O5 | C8 | H81 | 46.4° | 46.4° |
HO5 | O5 | C8 | H82 | 74.0° | 74.0° |
C1 | N1 | C5 | C7 | 129.0° | 129.0° |
N1 | C1 | C2 | C3 | 115.8° | 115.8° |
N1 | C1 | C2 | C4 | 131.2° | 131.2° |
N1 | C1 | C3 | C4 | 124.2° | 124.2° |
N1 | C1 | C2 | H21 | 79.8° | 79.8° |
N1 | C1 | C2 | H22 | 160.6° | 160.6° |
N1 | C1 | C3 | H31 | 171.0° | 171.0° |
N1 | C1 | C3 | H32 | 68.9° | 68.9° |
N1 | C1 | C4 | H41 | 58.4° | 58.4° |
N1 | C1 | C4 | H42 | 177.6° | 177.6° |
C1 | N1 | C5 | C6 | 100.6° | 100.6° |
C1 | N1 | C5 | H51 | 138.8° | 138.8° |
C1 | N1 | C5 | H52 | 20.0° | 20.0° |
C1 | N1 | C7 | C8 | 150.3° | 150.3° |
C1 | N1 | C7 | H71 | 29.9° | 29.9° |
C1 | N1 | C7 | H72 | 89.4° | 89.4° |
C5 | N1 | C1 | C2 | 177.2° | 177.2° |
C5 | N1 | C1 | C3 | 61.6° | 61.6° |
C5 | N1 | C1 | C4 | 54.6° | 54.6° |
N1 | C5 | C6 | H51 | 120.6° | 120.6° |
N1 | C5 | C6 | H52 | 120.6° | 120.6° |
N1 | C5 | H51 | H52 | 118.1° | 118.1° |
N1 | C5 | C6 | H61 | 80.9° | 80.8° |
N1 | C5 | C6 | H62 | 159.4° | 159.4° |
C5 | N1 | C7 | C8 | 79.6° | 79.6° |
C5 | N1 | C7 | H71 | 160.1° | 160.1° |
C5 | N1 | C7 | H72 | 40.8° | 40.8° |
C7 | N1 | C1 | C2 | 56.6° | 56.6° |
C7 | N1 | C1 | C3 | 172.1° | 172.1° |
C7 | N1 | C1 | C4 | 71.6° | 71.6° |
C7 | N1 | C5 | C6 | 130.5° | 130.5° |
C7 | N1 | C5 | H51 | 9.9° | 9.9° |
C7 | N1 | C5 | H52 | 109.0° | 109.0° |
N1 | C7 | C8 | H71 | 120.4° | 120.4° |
N1 | C7 | C8 | H72 | 120.4° | 120.4° |
N1 | C7 | H71 | H72 | 118.9° | 118.9° |
N1 | C7 | C8 | H81 | 63.5° | 63.5° |
N1 | C7 | C8 | H82 | 176.1° | 176.1° |
C2 | C1 | C3 | C4 | 117.5° | 117.5° |
C1 | C2 | H21 | H22 | 119.3° | 119.3° |
C2 | C1 | C3 | H31 | 52.7° | 52.7° |
C2 | C1 | C3 | H32 | 172.8° | 172.8° |
C2 | C1 | C4 | H41 | 173.6° | 173.6° |
C2 | C1 | C4 | H42 | 54.3° | 54.3° |
C3 | C1 | C2 | H21 | 164.4° | 164.4° |
C3 | C1 | C2 | H22 | 44.8° | 44.8° |
C1 | C3 | H31 | H32 | 120.2° | 120.2° |
C3 | C1 | C4 | H41 | 59.2° | 59.2° |
C3 | C1 | C4 | H42 | 60.0° | 60.0° |
C4 | C1 | C2 | H21 | 51.4° | 51.4° |
C4 | C1 | C2 | H22 | 68.2° | 68.2° |
C4 | C1 | C3 | H31 | 64.9° | 64.9° |
C4 | C1 | C3 | H32 | 55.3° | 55.3° |
C1 | C4 | H41 | H42 | 118.8° | 118.8° |
C6 | C5 | H51 | H52 | 118.1° | 118.1° |
C5 | C6 | H61 | H62 | 119.6° | 119.7° |
H51 | C5 | C6 | H61 | 158.5° | 158.6° |
H51 | C5 | C6 | H62 | 38.8° | 38.8° |
H52 | C5 | C6 | H61 | 39.7° | 39.8° |
H52 | C5 | C6 | H62 | 80.0° | 80.0° |
C8 | C7 | H71 | H72 | 118.8° | 118.8° |
C7 | C8 | H81 | H82 | 120.5° | 120.5° |
H71 | C7 | C8 | H81 | 176.1° | 176.1° |
H71 | C7 | C8 | H82 | 55.7° | 55.7° |
H72 | C7 | C8 | H81 | 56.8° | 56.8° |
H72 | C7 | C8 | H82 | 63.5° | 63.6° |