YBR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.23Å | |
| C | CA | sing | 1.51Å | 1.56Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CA | N | sing | 1.47Å | 1.49Å | |
| CB | CG | sing | 1.53Å | 1.53Å | |
| OE2 | CD | doub | 1.21Å | 1.22Å | |
| N | C7 | sing | 1.47Å | 1.48Å | |
| CG | CD | sing | 1.51Å | 1.51Å | |
| CD | O1 | sing | 1.34Å | 1.36Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| C7 | H1 | sing | 1.09Å | 1.10Å | |
| C7 | H4 | sing | 1.09Å | 1.10Å | |
| C7 | H3 | sing | 1.09Å | 1.10Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CG | HG3 | sing | 1.09Å | 1.10Å | |
| O1 | HE2 | sing | 0.97Å | 0.95Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 119.5° | 120.0° |
| O | C | OXT | 119.3° | 120.0° |
| C | CA | CB | 114.1° | 109.4° |
| C | CA | N | 113.8° | 109.5° |
| CA | C | OXT | 121.2° | 120.0° |
| C | CA | HA | 103.3° | 109.5° |
| CB | CA | N | 116.1° | 109.4° |
| CA | CB | CG | 111.3° | 109.4° |
| CB | CA | HA | 103.4° | 109.5° |
| CA | CB | HB2 | 109.0° | 109.5° |
| CA | CB | HB3 | 109.0° | 109.5° |
| CA | N | C7 | 112.4° | 111.0° |
| CA | N | H | 108.7° | 111.0° |
| N | CA | HA | 103.9° | 109.5° |
| CB | CG | CD | 112.1° | 109.5° |
| CG | CB | HB2 | 109.0° | 109.5° |
| CG | CB | HB3 | 109.0° | 109.5° |
| CB | CG | HG2 | 108.8° | 109.5° |
| CB | CG | HG3 | 108.8° | 109.5° |
| OE2 | CD | CG | 123.1° | 120.0° |
| OE2 | CD | O1 | 124.3° | 120.0° |
| N | C7 | H1 | 109.5° | 109.5° |
| N | C7 | H4 | 109.4° | 109.5° |
| N | C7 | H3 | 109.5° | 109.5° |
| C7 | N | H | 108.7° | 111.0° |
| CG | CD | O1 | 112.6° | 120.0° |
| CD | CG | HG2 | 108.8° | 109.4° |
| CD | CG | HG3 | 108.8° | 109.5° |
| CD | O1 | HE2 | 109.5° | 117.0° |
| C | OXT | HXT | 109.5° | 117.0° |
| H1 | C7 | H4 | 109.5° | 109.4° |
| H1 | C7 | H3 | 109.5° | 109.4° |
| H4 | C7 | H3 | 109.5° | 109.5° |
| HB2 | CB | HB3 | 109.5° | 109.5° |
| HG2 | CG | HG3 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | OXT | 179.0° | 180.0° |
| O | C | CA | CB | 23.0° | 93.8° |
| O | C | CA | N | 113.5° | 26.2° |
| O | C | CA | HA | 134.5° | 146.2° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| C | CA | CB | N | 135.4° | 120.0° |
| C | CA | CB | HA | 111.5° | 120.0° |
| C | CA | N | HA | 111.6° | 120.0° |
| C | CA | CB | CG | 123.2° | 175.0° |
| C | CA | N | C7 | 139.5° | 86.4° |
| C | CA | N | H | 100.1° | 149.7° |
| C | CA | CB | HB2 | 116.6° | 55.0° |
| C | CA | CB | HB3 | 2.9° | 65.0° |
| CA | C | OXT | HXT | 179.0° | 180.0° |
| CB | CA | N | HA | 112.8° | 120.0° |
| CA | CB | CG | HB2 | 120.3° | 120.0° |
| CA | CB | CG | HB3 | 120.3° | 120.0° |
| CB | CA | N | C7 | 84.9° | 153.7° |
| CA | CB | CG | CD | 160.5° | 180.0° |
| CB | CA | C | OXT | 156.1° | 86.3° |
| CB | CA | N | H | 35.5° | 29.8° |
| CA | CB | HB2 | HB3 | 119.2° | 120.0° |
| CA | CB | CG | HG2 | 40.0° | 60.0° |
| CA | CB | CG | HG3 | 79.1° | 60.0° |
| N | CA | CB | CG | 12.3° | 65.1° |
| CA | N | C7 | H | 120.4° | 123.9° |
| N | CA | C | OXT | 67.5° | 153.8° |
| CA | N | C7 | H1 | 180.0° | 175.3° |
| CA | N | C7 | H4 | 60.0° | 64.8° |
| CA | N | C7 | H3 | 60.0° | 55.3° |
| N | CA | CB | HB2 | 108.0° | 175.0° |
| N | CA | CB | HB3 | 132.5° | 54.9° |
| CB | CG | CD | OE2 | 20.4° | 0.1° |
| CB | CG | CD | HG2 | 120.4° | 120.0° |
| CB | CG | CD | HG3 | 120.4° | 120.0° |
| CB | CG | CD | O1 | 158.6° | 180.0° |
| CG | CB | CA | HA | 125.3° | 55.0° |
| CG | CB | HB2 | HB3 | 119.2° | 120.0° |
| CB | CG | HG2 | HG3 | 118.8° | 120.0° |
| OE2 | CD | CG | O1 | 179.1° | 180.0° |
| OE2 | CD | CG | HG2 | 140.9° | 120.1° |
| OE2 | CD | CG | HG3 | 100.0° | 120.0° |
| OE2 | CD | O1 | HE2 | 0.0° | 0.0° |
| N | C7 | H1 | H4 | 120.0° | 120.0° |
| N | C7 | H1 | H3 | 120.0° | 120.0° |
| N | C7 | H4 | H3 | 120.0° | 120.0° |
| C7 | N | CA | HA | 27.9° | 33.7° |
| CD | CG | CB | HB2 | 79.3° | 60.0° |
| CD | CG | CB | HB3 | 40.2° | 60.0° |
| CD | CG | HG2 | HG3 | 118.8° | 120.0° |
| CG | CD | O1 | HE2 | 179.1° | 179.9° |
| O1 | CD | CG | HG2 | 38.2° | 60.0° |
| O1 | CD | CG | HG3 | 81.0° | 60.0° |
| OXT | C | CA | HA | 44.5° | 33.7° |
| H1 | C7 | H4 | H3 | 120.0° | 120.0° |
| H1 | C7 | N | H | 59.6° | 51.4° |
| H4 | C7 | N | H | 179.6° | 171.3° |
| H3 | C7 | N | H | 60.4° | 68.6° |
| H | N | CA | HA | 148.3° | 90.2° |
| HA | CA | CB | HB2 | 5.1° | 65.0° |
| HA | CA | CB | HB3 | 114.4° | 175.0° |
| HB2 | CB | CG | HG2 | 160.3° | 180.0° |
| HB2 | CB | CG | HG3 | 41.1° | 60.0° |
| HB3 | CB | CG | HG2 | 80.2° | 60.0° |
| HB3 | CB | CG | HG3 | 160.6° | 180.0° |
