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YBE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O37N36sing1.21Å1.37ÅAromatic
O37C02sing1.34Å1.31ÅAromatic
N36C34doub1.30Å1.34ÅAromatic
C02C01sing1.51Å1.53Å
C02C03doub1.37Å1.39ÅAromatic
C34C03sing1.42Å1.40ÅAromatic
C34C35sing1.51Å1.54Å
C03C04sing1.48Å1.53Å
C04C05doub1.39Å1.38ÅAromatic
C04C33sing1.40Å1.40ÅAromatic
C05C06sing1.40Å1.42ÅAromatic
C33C32doub1.37Å1.39ÅAromatic
C06N07sing1.36Å1.36ÅAromatic
C06C31doub1.41Å1.38ÅAromatic
N07C08doub1.30Å1.34ÅAromatic
C32C31sing1.39Å1.42ÅAromatic
C31N16sing1.38Å1.37ÅAromatic
O15C11doub1.21Å1.19Å
C11C12sing1.50Å1.57Å
C11N10sing1.33Å1.53Å
C08N16sing1.36Å1.34ÅAromatic
C08C09sing1.51Å1.50Å
C12C13sing1.53Å1.46Å
N16C17sing1.46Å1.49Å
N10C09sing1.46Å1.55Å
C13C14sing1.53Å1.44Å
C09C14sing1.53Å1.48Å
C17C30sing1.53Å1.53Å
C17C18sing1.53Å1.53Å
C30C29sing1.53Å1.54Å
C18C19sing1.53Å1.54Å
C29C20sing1.53Å1.54Å
C19C20sing1.53Å1.53Å
C20N21sing1.46Å1.46Å
O28C22doub1.22Å1.19Å
N21C22sing1.35Å1.47Å
C22O23sing1.35Å1.42Å
O23C24sing1.45Å1.42Å
C27C24sing1.53Å1.53Å
C26C24sing1.53Å1.53Å
C24C25sing1.53Å1.53Å
C13H1sing1.09Å1.10Å
C13H2sing1.09Å1.10Å
C17H3sing1.09Å1.10Å
C20H4sing1.09Å1.10Å
C26H5sing1.09Å1.10Å
C26H6sing1.09Å1.10Å
C26H7sing1.09Å1.10Å
C01H8sing1.09Å1.10Å
C01H9sing1.09Å1.10Å
C01H10sing1.09Å1.10Å
C05H11sing1.08Å1.08Å
C09H12sing1.09Å1.10Å
C12H13sing1.09Å1.10Å
C12H14sing1.09Å1.10Å
C14H15sing1.09Å1.10Å
C14H16sing1.09Å1.10Å
C18H17sing1.09Å1.10Å
C18H18sing1.09Å1.10Å
C19H19sing1.09Å1.10Å
C19H20sing1.09Å1.10Å
C25H21sing1.09Å1.10Å
C25H22sing1.09Å1.10Å
C25H23sing1.09Å1.10Å
C27H24sing1.09Å1.10Å
C27H25sing1.09Å1.10Å
C27H26sing1.09Å1.10Å
C29H27sing1.09Å1.10Å
C29H28sing1.09Å1.10Å
C30H29sing1.09Å1.10Å
C30H30sing1.09Å1.10Å
C32H31sing1.08Å1.08Å
C33H32sing1.08Å1.08Å
C35H33sing1.09Å1.10Å
C35H34sing1.09Å1.10Å
C35H35sing1.09Å1.10Å
N10H36sing0.97Å1.00Å
N21H37sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N36O37C02110.6°111.8°
O37N36C34107.7°111.9°
O37C02C01124.9°126.9°
O37C02C03107.3°106.3°
N36C34C03107.4°106.3°
N36C34C35124.3°126.8°
C01C02C03127.7°126.9°
C02C01H8109.5°109.5°
C02C01H9109.5°109.5°
C02C01H10109.5°109.5°
C02C03C34106.9°103.7°
C02C03C04126.9°128.2°
C03C34C35128.2°126.9°
C34C03C04126.2°128.1°
C34C35H33109.5°109.5°
C34C35H34109.5°109.5°
C34C35H35109.5°109.4°
C03C04C05120.3°119.9°
C03C04C33118.6°119.9°
C05C04C33121.1°120.2°
C04C05C06117.6°119.6°
C04C05H11121.2°120.2°
C04C33C32121.6°120.4°
C04C33H32119.2°119.8°
C05C06N07131.1°133.5°
C05C06C31121.6°119.5°
C06C05H11121.2°120.3°
C33C32C31117.4°120.2°
C33C32H31121.3°119.9°
C32C33H32119.2°119.8°
N07C06C31107.3°107.0°
C06N07C08107.9°109.6°
C06C31C32120.7°120.1°
C06C31N16107.4°106.0°
N07C08N16109.7°110.1°
N07C08C09125.3°125.0°
C32C31N16131.9°133.9°
C31C32H31121.3°119.9°
C31N16C08107.7°107.3°
C31N16C17127.1°126.4°
O15C11C12120.5°118.2°
O15C11N10121.3°118.2°
C12C11N10118.2°123.5°
C11C12C13117.4°109.9°
C11C12H13107.4°109.4°
C11C12H14107.5°109.4°
C11N10C09115.8°124.1°
C11N10H36122.1°117.9°
N16C08C09125.1°124.9°
C08N16C17125.2°126.3°
C08C09N10109.8°109.3°
C08C09C14106.6°109.3°
C08C09H12108.6°109.3°
C12C13C14112.3°108.4°
C12C13H1108.8°109.6°
C12C13H2108.8°109.7°
C13C12H13107.5°109.5°
C13C12H14107.4°109.4°
N16C17C30110.3°109.5°
N16C17C18109.6°109.5°
N16C17H3108.6°109.5°
N10C09C14114.7°110.5°
N10C09H12108.0°109.1°
C09N10H36122.1°118.0°
C13C14C09114.1°108.7°
C14C13H1108.8°109.7°
C14C13H2108.8°109.7°
C13C14H15108.3°109.6°
C13C14H16108.3°109.6°
C14C09H12108.9°109.3°
C09C14H15108.3°109.6°
C09C14H16108.3°109.6°
C30C17C18111.9°109.5°
C17C30C29110.4°109.5°
C30C17H3108.1°109.5°
C17C30H29109.2°109.5°
C17C30H30109.2°109.5°
C17C18C19113.7°109.5°
C18C17H3108.1°109.5°
C17C18H17108.4°109.5°
C17C18H18108.4°109.5°
C30C29C20116.3°109.4°
C30C29H27107.7°109.5°
C30C29H28107.7°109.4°
C29C30H29109.2°109.5°
C29C30H30109.2°109.4°
C18C19C20114.7°109.5°
C19C18H17108.4°109.5°
C19C18H18108.4°109.4°
C18C19H19108.1°109.5°
C18C19H20108.2°109.4°
C29C20C19118.5°109.5°
C29C20N21104.8°109.5°
C29C20H4106.1°109.4°
C20C29H27107.7°109.5°
C20C29H28107.8°109.5°
C19C20N21113.7°109.5°
C19C20H4106.1°109.5°
C20C19H19108.1°109.5°
C20C19H20108.1°109.5°
C20N21C22130.7°120.0°
N21C20H4107.0°109.5°
C20N21H37114.7°120.0°
O28C22N21123.6°120.0°
O28C22O23123.0°120.0°
N21C22O23113.2°120.0°
C22N21H37114.6°120.0°
C22O23C24121.8°117.0°
O23C24C27111.1°109.5°
O23C24C26109.5°109.5°
O23C24C25105.9°109.5°
C27C24C26112.6°109.5°
C27C24C25108.2°109.5°
C24C27H24109.5°109.5°
C24C27H25109.4°109.4°
C24C27H26109.5°109.5°
C26C24C25109.3°109.4°
C24C26H5109.5°109.5°
C24C26H6109.5°109.4°
C24C26H7109.5°109.4°
C24C25H21109.5°109.5°
C24C25H22109.5°109.4°
C24C25H23109.4°109.5°
H1C13H2109.5°109.7°
H5C26H6109.5°109.5°
H5C26H7109.5°109.5°
H6C26H7109.5°109.4°
H8C01H9109.5°109.5°
H8C01H10109.5°109.5°
H9C01H10109.5°109.5°
H13C12H14109.4°109.3°
H15C14H16109.4°109.8°
H17C18H18109.5°109.4°
H19C19H20109.5°109.5°
H21C25H22109.4°109.5°
H21C25H23109.5°109.5°
H22C25H23109.5°109.4°
H24C27H25109.5°109.5°
H24C27H26109.4°109.5°
H25C27H26109.5°109.4°
H27C29H28109.5°109.5°
H29C30H30109.5°109.5°
H33C35H34109.5°109.5°
H33C35H35109.5°109.4°
H34C35H35109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N36O37C02C01179.2°179.8°
N36O37C02C030.5°0.5°
O37N36C34C030.5°0.3°
O37N36C34C35179.8°179.7°
C02O37N36C340.0°0.5°
O37C02C01C03178.4°179.6°
O37C02C03C340.8°0.3°
O37C02C03C04179.2°179.7°
O37C02C01H80.0°90.3°
O37C02C01H9120.0°29.7°
O37C02C01H10120.0°149.7°
N36C34C03C020.8°0.0°
N36C34C03C35179.7°180.0°
N36C34C03C04179.2°180.0°
N36C34C35H330.0°90.1°
N36C34C35H34120.0°30.0°
N36C34C35H35120.0°150.0°
C01C02C03C34179.4°180.0°
C01C02C03C040.6°0.0°
C02C01H8H9120.0°120.0°
C02C01H8H10120.0°120.0°
C02C01H9H10120.0°120.0°
C02C03C34C04180.0°180.0°
C02C03C34C35179.5°180.0°
C02C03C04C0553.5°115.0°
C02C03C04C33126.3°65.2°
C03C02C01H8178.4°90.1°
C03C02C01H958.4°150.0°
C03C02C01H1061.6°30.0°
C34C03C04C05126.5°65.0°
C34C03C04C3353.8°114.8°
C03C34C35H33179.7°90.0°
C03C34C35H3460.3°150.0°
C03C34C35H3559.7°30.0°
C35C34C03C040.5°0.1°
C34C35H33H34120.0°120.1°
C34C35H33H35120.0°119.9°
C34C35H34H35120.0°120.0°
C03C04C05C33179.7°179.8°
C03C04C05C06179.7°180.0°
C03C04C33C32179.7°179.8°
C03C04C05H110.3°0.1°
C03C04C33H320.3°0.0°
C04C05C06H11180.0°179.9°
C05C04C33C320.0°0.5°
C04C05C06N07179.4°180.0°
C04C05C06C310.1°0.0°
C05C04C33H32180.0°179.8°
C33C04C05C060.0°0.2°
C04C33C32H32180.0°179.8°
C04C33C32C310.1°0.5°
C33C04C05H11180.0°179.8°
C04C33C32H31179.9°179.7°
C05C06N07C31179.6°179.9°
C05C06N07C08179.7°180.0°
C05C06C31C320.2°0.1°
C05C06C31N16179.8°180.0°
C33C32C31C060.2°0.2°
C33C32C31H31180.0°179.8°
C33C32C31N16179.8°179.7°
N07C06C31C32179.4°180.0°
N07C06C31N160.6°0.0°
C06N07C08N160.5°0.1°
C06N07C08C09178.9°180.0°
N07C06C05H110.6°0.0°
C31C06N07C080.7°0.1°
C06C31C32N16180.0°179.9°
C06C31N16C080.3°0.0°
C06C31N16C17179.7°180.0°
C31C06C05H11179.9°179.9°
C06C31C32H31179.8°180.0°
N07C08N16C310.1°0.0°
N07C08N16C09178.4°179.9°
N07C08N16C17179.3°179.9°
N07C08C09N1024.7°46.0°
N07C08C09C14100.2°75.0°
N07C08C09H12142.6°165.4°
C32C31N16C08179.7°179.9°
C32C31N16C170.3°0.1°
C31C32C33H32179.9°179.8°
C31N16C08C17179.4°180.0°
C31N16C08C09178.5°180.0°
C31N16C17C3056.6°59.9°
C31N16C17C1867.1°60.1°
C31N16C17H3174.9°179.9°
N16C31C32H310.2°0.1°
O15C11C12N10178.8°179.9°
O15C11C12C13170.7°162.4°
O15C11N10C09179.8°177.8°
O15C11C12H1368.1°77.4°
O15C11C12H1449.6°42.3°
O15C11N10H360.2°2.2°
C11C12C13H13121.1°120.2°
C11C12C13H14121.2°120.1°
C12C11N10C091.4°2.3°
C11C12C13C1438.5°48.9°
C11C12C13H1159.0°70.8°
C11C12C13H281.9°168.7°
C11C12H13H14116.4°119.7°
C12C11N10H36178.6°177.8°
C11N10C09C08100.6°139.4°
N10C11C12C138.1°17.6°
C11N10C09H36180.0°180.0°
C11N10C09C1419.4°19.1°
C11N10C09H12141.1°101.1°
N10C11C12H13113.1°102.6°
N10C11C12H14129.2°137.7°
N16C08C09N10157.1°133.9°
N16C08C09C1478.0°105.0°
C08N16C17C30124.1°120.1°
C08N16C17C18112.2°120.0°
C08N16C17H35.7°0.0°
N16C08C09H1239.3°14.6°
C09C08N16C170.9°0.0°
C08C09N10C14120.0°120.3°
C08C09N10H12118.3°119.5°
C08C09C14C1369.7°171.1°
C08C09C14H12117.0°119.6°
C08C09C14H15169.7°69.2°
C08C09C14H1651.1°51.3°
C08C09N10H3679.4°40.7°
C12C13C14H1120.4°119.7°
C12C13C14H2120.4°119.8°
C12C13C14C0962.0°67.5°
C12C13H1H2118.7°120.5°
C13C12H13H14116.4°119.8°
C12C13C14H1558.7°172.7°
C12C13C14H16177.3°52.2°
N16C17C30C18122.4°120.0°
N16C17C30H3118.7°120.0°
N16C17C18H3118.3°120.0°
N16C17C30C29177.6°180.0°
N16C17C18C19177.2°180.0°
N16C17C18H1762.2°60.0°
N16C17C18H1856.5°60.0°
N16C17C30H2962.2°60.0°
N16C17C30H3057.5°60.0°
N10C09C14C1352.1°50.7°
N10C09C14H12121.2°120.1°
N10C09C14H1568.5°170.5°
N10C09C14H16172.8°69.0°
C13C14C09H15120.7°119.8°
C13C14C09H16120.7°119.7°
C14C13H1H2118.7°120.5°
C13C14C09H12173.3°69.3°
C14C13C12H1382.6°71.2°
C14C13C12H14159.7°169.0°
C13C14H15H16117.9°120.4°
C09C14C13H1177.6°52.2°
C09C14C13H258.4°172.7°
C09C14H15H16117.9°120.4°
C14C09N10H36160.6°161.0°
C30C17C18H3118.9°120.0°
C17C30C29H29120.2°120.0°
C17C30C29H30120.1°120.0°
C30C17C18C1954.4°60.0°
C17C30C29C2019.8°60.0°
C30C17C18H17175.0°180.0°
C30C17C18H1866.2°60.0°
C17C30C29H27140.8°60.0°
C17C30C29H28101.2°180.0°
C17C30H29H30119.6°120.0°
C18C17C30C2960.0°60.0°
C17C18C19H17120.6°120.1°
C17C18C19H18120.6°120.0°
C17C18C19C207.8°60.0°
C17C18H17H18118.1°120.0°
C17C18C19H19113.0°180.0°
C17C18C19H20128.6°60.0°
C18C17C30H2960.1°60.0°
C18C17C30H30179.8°180.0°
C30C29C20H27121.0°120.0°
C30C29C20H28121.0°119.9°
C30C29C20C1925.7°60.0°
C30C29C20N21153.7°60.0°
C29C30C17H358.9°60.0°
C30C29C20H493.3°180.0°
C30C29H27H28116.9°120.0°
C29C30H29H30119.6°120.0°
C18C19C20C2932.0°60.0°
C18C19C20H19120.8°120.0°
C18C19C20H20120.8°119.9°
C18C19C20N21155.7°60.1°
C19C18C17H364.5°60.1°
C18C19C20H487.0°179.9°
C19C18H17H18118.1°119.9°
C18C19H19H20117.6°120.0°
C29C20C19N21123.8°120.0°
C29C20C19H4119.0°119.9°
C29C20N21H4112.3°119.9°
C29C20N21C22139.1°84.9°
C29C20C19H19152.7°180.0°
C29C20C19H2088.8°60.0°
C20C29H27H28116.9°120.1°
C20C29C30H29100.4°60.0°
C20C29C30H30139.9°180.0°
C29C20N21H3740.8°95.0°
C19C20N21H4116.8°120.0°
C19C20N21C228.3°155.0°
C20C19C18H17128.4°180.0°
C20C19C18H18112.8°60.1°
C20C19H19H20117.6°120.0°
C19C20C29H2795.3°59.9°
C19C20C29H28146.7°180.0°
C19C20N21H37171.7°25.0°
C20N21C22O2852.0°0.0°
C20N21C22H37180.0°180.0°
C20N21C22O23131.5°180.0°
N21C20C19H1983.5°60.0°
N21C20C19H2035.0°180.0°
N21C20C29H2732.8°180.0°
N21C20C29H2885.3°59.9°
O28C22N21O23176.5°180.0°
O28C22O23C243.3°0.0°
O28C22N21H37128.0°180.0°
N21C22O23C24179.8°180.0°
C22N21C20H4108.5°35.0°
C22O23C24C2760.0°60.0°
C22O23C24C2664.9°180.0°
C22O23C24C25177.3°60.0°
O23C22N21H3748.5°0.0°
O23C24C27C26123.2°120.0°
O23C24C27C25115.9°120.0°
O23C24C26C25115.6°120.0°
O23C24C26H5180.0°60.0°
O23C24C26H660.0°60.0°
O23C24C26H760.0°180.0°
O23C24C25H21180.0°180.0°
O23C24C25H2260.0°60.0°
O23C24C25H2360.0°60.0°
O23C24C27H24180.0°180.0°
O23C24C27H2560.0°59.9°
O23C24C27H2660.0°60.0°
C27C24C26C25120.3°120.0°
C27C24C26H555.9°180.0°
C27C24C26H6175.9°60.0°
C27C24C26H764.1°59.9°
C27C24C25H2160.8°59.9°
C27C24C25H2259.2°60.0°
C27C24C25H23179.2°180.0°
C24C27H24H25120.0°120.0°
C24C27H24H26120.0°120.0°
C24C27H25H26120.0°119.9°
C24C26H5H6120.0°120.0°
C24C26H5H7120.0°120.0°
C24C26H6H7120.0°119.9°
C26C24C25H2162.2°60.1°
C26C24C25H22177.9°180.0°
C26C24C25H2357.8°60.0°
C26C24C27H2456.8°60.0°
C26C24C27H2563.2°60.1°
C26C24C27H26176.8°180.0°
C25C24C26H564.4°60.0°
C25C24C26H655.6°180.0°
C25C24C26H7175.6°60.1°
C24C25H21H22120.0°120.0°
C24C25H21H23120.0°120.1°
C24C25H22H23120.0°120.0°
C25C24C27H2464.1°60.0°
C25C24C27H25175.9°180.0°
C25C24C27H2655.9°60.0°
H1C13C12H1337.8°169.0°
H1C13C12H1479.9°49.3°
H1C13C14H1561.7°67.6°
H1C13C14H1656.9°171.9°
H2C13C12H13157.0°48.5°
H2C13C12H1439.3°71.2°
H2C13C14H15179.1°53.0°
H2C13C14H1662.3°67.6°
H3C17C18H1756.1°60.0°
H3C17C18H18174.9°180.0°
H3C17C30H29179.1°180.0°
H3C17C30H3061.2°60.0°
H4C20C19H1933.8°60.0°
H4C20C19H20152.2°60.0°
H4C20C29H27145.7°60.0°
H4C20C29H2827.7°60.0°
H4C20N21H3771.5°145.0°
H5C26H6H7120.0°120.1°
H8C01H9H10120.0°120.0°
H12C09C14H1552.6°50.5°
H12C09C14H1666.0°170.9°
H12C09N10H3638.9°78.9°
H17C18C19H197.7°60.0°
H17C18C19H20110.8°60.1°
H18C18C19H19126.4°59.9°
H18C18C19H207.9°179.9°
H21C25H22H23120.0°120.0°
H24C27H25H26120.0°120.0°
H27C29C30H2920.6°180.0°
H27C29C30H3099.1°60.0°
H28C29C30H29138.6°60.0°
H28C29C30H3018.9°60.0°
H31C32C33H320.1°0.0°
H33C35H34H35120.0°120.0°

223532

PDB entries from 2024-08-07

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