Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

YB6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C01C02trip1.17Å1.19Å
N03C05sing1.39Å1.42Å
N04C05doub1.32Å1.38ÅAromatic
N03C06sing1.35Å1.41Å
C06O07doub1.21Å1.24Å
C01C08sing1.43Å1.48Å
C02C09sing1.43Å1.46Å
N04C10sing1.32Å1.35ÅAromatic
C08C10doub1.40Å1.38ÅAromatic
C05C12sing1.39Å1.40ÅAromatic
C11F13sing1.35Å1.35Å
C08C14sing1.40Å1.38ÅAromatic
C12C14doub1.38Å1.37ÅAromatic
C09C15doub1.40Å1.40ÅAromatic
C09C16sing1.40Å1.40ÅAromatic
C11C17doub1.39Å1.39ÅAromatic
C15C17sing1.38Å1.40ÅAromatic
C11C18sing1.39Å1.41ÅAromatic
C16C18doub1.38Å1.40ÅAromatic
C06C19sing1.51Å1.50Å
N03H20sing0.97Å1.00Å
C10H21sing1.08Å1.08Å
C15H24sing1.08Å1.08Å
C16H25sing1.08Å1.08Å
C17H26sing1.08Å1.08Å
C18H27sing1.08Å1.08Å
C19H29sing1.09Å1.10Å
C19H28sing1.09Å1.10Å
C19H30sing1.09Å1.10Å
C12H22sing1.08Å1.08Å
C14H23sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C02C01C08178.4°180.0°
C01C02C09177.6°180.0°
N03C05N04115.3°119.4°
C05N03C06125.1°120.0°
N03C05C12121.3°119.5°
C05N03H20117.4°119.9°
C05N04C10119.3°121.7°
N04C05C12123.4°121.0°
N03C06O07121.2°120.0°
N03C06C19114.8°120.0°
C06N03H20117.5°120.0°
O07C06C19124.0°120.0°
C01C08C10116.3°120.6°
C01C08C14120.5°120.5°
C02C09C15121.4°120.1°
C02C09C16115.1°120.2°
N04C10C08118.2°120.7°
N04C10H21120.9°119.7°
C10C08C14123.1°119.0°
C08C10H21120.9°119.7°
C05C12C14116.0°119.3°
C05C12H22122.0°120.4°
F13C11C17119.8°119.9°
F13C11C18119.0°119.8°
C08C14C12119.9°118.3°
C08C14H23120.1°120.9°
C14C12H22122.0°120.4°
C12C14H23120.0°120.8°
C15C09C16123.5°119.7°
C09C15C17118.1°119.9°
C09C15H24121.0°120.1°
C09C16C18117.4°119.9°
C09C16H25121.3°120.0°
C11C17C15119.6°120.1°
C17C11C18121.2°120.3°
C11C17H26120.2°119.9°
C17C15H24120.9°120.1°
C15C17H26120.2°120.0°
C11C18C16120.1°120.1°
C11C18H27119.9°119.9°
C18C16H25121.3°120.1°
C16C18H27119.9°119.9°
C06C19H29109.5°109.5°
C06C19H28109.5°109.5°
C06C19H30109.5°109.5°
H29C19H28109.4°109.5°
H29C19H30109.5°109.4°
H28C19H30109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C02C01C08C10160.9°61.7°
C02C01C08C1418.3°118.0°
C01C02C09C15148.9°143.2°
C01C02C09C1631.3°37.1°
N03C05N04C12179.5°179.7°
C05N03C06H20180.0°179.7°
C05N03C06O071.1°5.1°
N03C05N04C10179.7°180.0°
N03C05C12C14179.2°180.0°
C05N03C06C19179.1°174.9°
N03C05C12H220.8°0.0°
N04C05N03C06176.7°4.8°
C05N04C10C080.9°0.0°
N04C05C12C140.3°0.3°
N04C05N03H203.3°174.9°
C05N04C10H21179.1°179.9°
N04C05C12H22179.7°179.7°
N03C06O07C19177.7°180.0°
C06N03C05C123.8°174.9°
N03C06C19H29177.9°0.0°
N03C06C19H2857.9°120.0°
N03C06C19H3062.1°120.0°
O07C06N03H20178.9°174.6°
O07C06C19H290.0°180.0°
O07C06C19H28120.0°60.0°
O07C06C19H30120.0°60.0°
C08C01C02C09150.4°98.6°
C01C08C10N04179.8°180.0°
C01C08C10C14179.1°179.8°
C01C08C14C12179.6°180.0°
C01C08C10H210.2°0.0°
C01C08C14H230.4°0.2°
C02C09C15C16179.8°179.8°
C02C09C15C17178.8°180.0°
C02C09C16C18179.0°180.0°
C02C09C15H241.2°0.0°
C02C09C16H250.9°0.0°
N04C10C08H21180.0°179.9°
C10N04C05C120.3°0.3°
N04C10C08C141.1°0.3°
C10C08C14C120.5°0.2°
C10C08C14H23179.5°180.0°
C05C12C14C080.2°0.0°
C05C12C14H22180.0°180.0°
C12C05N03H20176.2°5.4°
C05C12C14H23179.8°179.8°
F13C11C17C18178.5°179.7°
F13C11C17C15178.2°180.0°
F13C11C18C16178.4°180.0°
F13C11C17H261.8°0.0°
F13C11C18H271.6°0.1°
C08C14C12H23180.0°179.8°
C14C08C10H21178.9°179.8°
C08C14C12H22179.8°180.0°
C09C15C17C110.7°0.0°
C09C15C17H24180.0°180.0°
C15C09C16C180.8°0.2°
C15C09C16H25179.3°179.7°
C09C15C17H26179.3°180.0°
C16C09C15C171.0°0.3°
C09C16C18C110.3°0.1°
C09C16C18H25180.0°180.0°
C16C09C15H24179.0°179.8°
C09C16C18H27179.7°179.9°
C11C17C15H26180.0°180.0°
C17C11C18C160.1°0.4°
C11C17C15H24179.3°179.9°
C17C11C18H27180.0°179.8°
C15C17C11C180.3°0.3°
C11C18C16H27180.0°179.9°
C11C18C16H25179.7°179.9°
C18C11C17H26179.7°179.7°
C19C06N03H200.9°5.4°
C06C19H29H28120.0°120.0°
C06C19H29H30120.0°120.0°
C06C19H28H30120.0°120.1°
H24C15C17H260.7°0.0°
H25C16C18H270.2°0.1°
H29C19H28H30120.0°119.9°
H22C12C14H230.2°0.2°

248335

PDB entries from 2026-01-28

PDB statisticsPDBj update infoContact PDBjnumon