YAZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C5' | C6' | doub | 1.38Å | 1.39Å | Aromatic |
| C5' | C4' | sing | 1.39Å | 1.39Å | Aromatic |
| O4' | C4' | sing | 1.36Å | 1.36Å | |
| C6' | C1' | sing | 1.40Å | 1.40Å | Aromatic |
| C4' | C3' | doub | 1.39Å | 1.46Å | Aromatic |
| C2 | C3 | doub | 1.35Å | 1.33Å | |
| C2 | C1 | sing | 1.42Å | 1.46Å | |
| C1' | C3 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | doub | 1.40Å | 1.39Å | Aromatic |
| C3' | C2' | sing | 1.38Å | 1.38Å | Aromatic |
| C3' | CL13 | sing | 1.74Å | 1.78Å | |
| C1 | O2 | doub | 1.22Å | 1.25Å | |
| C1 | O1 | sing | 1.35Å | 1.77Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| C2' | H2 | sing | 1.08Å | 1.08Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C5' | H4 | sing | 1.08Å | 1.08Å | |
| C6' | H5 | sing | 1.08Å | 1.08Å | |
| O4' | H6 | sing | 0.97Å | 0.95Å | |
| O1 | H7 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C6' | C5' | C4' | 119.2° | 120.2° |
| C5' | C6' | C1' | 121.9° | 119.9° |
| C6' | C5' | H4 | 120.4° | 119.9° |
| C5' | C6' | H5 | 119.0° | 120.1° |
| C5' | C4' | O4' | 121.7° | 119.9° |
| C5' | C4' | C3' | 118.5° | 120.2° |
| C4' | C5' | H4 | 120.4° | 119.9° |
| O4' | C4' | C3' | 119.8° | 119.9° |
| C4' | O4' | H6 | 109.5° | 114.0° |
| C6' | C1' | C3 | 121.5° | 120.1° |
| C6' | C1' | C2' | 120.7° | 119.8° |
| C1' | C6' | H5 | 119.1° | 120.0° |
| C4' | C3' | C2' | 121.2° | 120.1° |
| C4' | C3' | CL13 | 118.4° | 120.0° |
| C3 | C2 | C1 | 115.2° | 120.0° |
| C2 | C3 | C1' | 120.8° | 120.0° |
| C3 | C2 | H1 | 122.4° | 120.0° |
| C2 | C3 | H3 | 119.6° | 120.0° |
| C2 | C1 | O2 | 115.6° | 120.0° |
| C2 | C1 | O1 | 111.5° | 120.0° |
| C1 | C2 | H1 | 122.4° | 120.0° |
| C3 | C1' | C2' | 117.5° | 120.1° |
| C1' | C3 | H3 | 119.6° | 120.0° |
| C1' | C2' | C3' | 118.5° | 119.9° |
| C1' | C2' | H2 | 120.7° | 120.1° |
| C2' | C3' | CL13 | 120.4° | 120.0° |
| C3' | C2' | H2 | 120.8° | 120.0° |
| O2 | C1 | O1 | 119.5° | 120.0° |
| C1 | O1 | H7 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C6' | C5' | C4' | H4 | 180.0° | 179.5° |
| C6' | C5' | C4' | O4' | 180.0° | 179.8° |
| C5' | C6' | C1' | H5 | 180.0° | 179.4° |
| C6' | C5' | C4' | C3' | 0.8° | 0.3° |
| C5' | C6' | C1' | C3 | 177.9° | 179.8° |
| C5' | C6' | C1' | C2' | 3.2° | 0.5° |
| C5' | C4' | O4' | C3' | 179.2° | 180.0° |
| C4' | C5' | C6' | C1' | 1.2° | 0.5° |
| C5' | C4' | C3' | C2' | 0.8° | 0.0° |
| C5' | C4' | C3' | CL13 | 179.5° | 180.0° |
| C4' | C5' | C6' | H5 | 178.8° | 180.0° |
| C5' | C4' | O4' | H6 | 180.0° | 90.0° |
| O4' | C4' | C3' | C2' | 180.0° | 180.0° |
| O4' | C4' | C3' | CL13 | 0.3° | 0.1° |
| O4' | C4' | C5' | H4 | 0.0° | 0.3° |
| C6' | C1' | C3 | C2 | 13.3° | 0.3° |
| C6' | C1' | C3 | C2' | 174.9° | 179.7° |
| C6' | C1' | C2' | C3' | 3.1° | 0.3° |
| C6' | C1' | C2' | H2 | 176.9° | 179.7° |
| C6' | C1' | C3 | H3 | 166.7° | 179.8° |
| C1' | C6' | C5' | H4 | 178.8° | 180.0° |
| C4' | C3' | C2' | C1' | 1.2° | 0.0° |
| C4' | C3' | C2' | CL13 | 179.7° | 179.9° |
| C4' | C3' | C2' | H2 | 178.8° | 179.9° |
| C3' | C4' | C5' | H4 | 179.2° | 179.8° |
| C3' | C4' | O4' | H6 | 0.8° | 89.9° |
| C3 | C2 | C1 | H1 | 180.0° | 180.0° |
| C2 | C3 | C1' | H3 | 180.0° | 179.9° |
| C2 | C3 | C1' | C2' | 161.5° | 180.0° |
| C3 | C2 | C1 | O2 | 48.1° | 0.0° |
| C3 | C2 | C1 | O1 | 170.9° | 179.7° |
| C1 | C2 | C3 | C1' | 177.0° | 180.0° |
| C2 | C1 | O2 | O1 | 137.7° | 179.7° |
| C1 | C2 | C3 | H3 | 3.0° | 0.1° |
| C2 | C1 | O1 | H7 | 139.3° | 179.7° |
| C3 | C1' | C2' | C3' | 178.0° | 180.0° |
| C1' | C3 | C2 | H1 | 3.0° | 0.0° |
| C3 | C1' | C2' | H2 | 2.0° | 0.0° |
| C3 | C1' | C6' | H5 | 2.1° | 0.3° |
| C1' | C2' | C3' | H2 | 180.0° | 180.0° |
| C1' | C2' | C3' | CL13 | 178.6° | 180.0° |
| C2' | C1' | C3 | H3 | 18.4° | 0.0° |
| C2' | C1' | C6' | H5 | 176.8° | 180.0° |
| CL13 | C3' | C2' | H2 | 1.4° | 0.0° |
| O2 | C1 | C2 | H1 | 131.9° | 180.0° |
| O2 | C1 | O1 | H7 | 0.0° | 0.0° |
| O1 | C1 | C2 | H1 | 9.1° | 0.3° |
| H1 | C2 | C3 | H3 | 177.0° | 179.9° |
| H4 | C5' | C6' | H5 | 1.2° | 0.6° |
