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Obsolete: YAP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
COdoub1.21Å1.40Å
CCAsing1.51Å1.54Å
CO3Psing1.34Å1.40Å
NCAsing1.47Å1.46Å
PO1Pdoub1.48Å1.45Å
PO2Psing1.61Å1.64Å
PO3Psing1.61Å1.66Å
PO5'sing1.61Å1.66Å
N1C2doub1.32Å1.47ÅAromatic
N1C6sing1.33Å1.47ÅAromatic
C2N3sing1.32Å1.50ÅAromatic
N3C4doub1.33Å1.46ÅAromatic
C4C5sing1.41Å1.47ÅAromatic
C4N9sing1.37Å1.43ÅAromatic
C5C6doub1.41Å1.50ÅAromatic
C5N7sing1.35Å1.46ÅAromatic
C6N6sing1.38Å1.44Å
N7C8doub1.30Å1.46ÅAromatic
C8N9sing1.36Å1.49ÅAromatic
N9C1'sing1.46Å1.44Å
CACBsing1.53Å1.54Å
CBCGsing1.51Å1.61Å
CGCD1doub1.38Å1.50ÅAromatic
CGCD2sing1.38Å1.39ÅAromatic
OHCZsing1.36Å1.49Å
CZCE1doub1.39Å1.50ÅAromatic
CZCE2sing1.39Å1.39ÅAromatic
C1'C2'sing1.55Å1.52Å
C1'O4'sing1.44Å1.44Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.49Å
C3'O3'sing1.43Å1.40Å
C3'C4'sing1.54Å1.55Å
C4'O4'sing1.44Å1.47Å
C4'C5'sing1.53Å1.54Å
C5'O5'sing1.43Å1.41Å
CD1CE1sing1.38Å1.39ÅAromatic
CD2CE2doub1.38Å1.50ÅAromatic
NHNsing1.01Å1.00Å
NHNAsing1.01Å1.00Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
CAHAsing1.09Å1.10Å
CBHBsing1.09Å1.10Å
CBHBAsing1.09Å1.10Å
OHHOHsing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O2PHO2Psing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
CD1HD1sing1.08Å1.08Å
CD2HD2sing1.08Å1.08Å
CE1HE1sing1.08Å1.08Å
CE2HE2sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OCCA111.6°120.0°
OCO3P110.9°120.0°
CACO3P105.9°120.0°
CCAN112.3°109.5°
CCACB112.1°109.5°
CCAHA106.7°109.5°
CO3PP123.8°117.0°
NCACB111.0°109.5°
CANHN109.5°110.9°
CANHNA109.5°111.0°
NCAHA107.7°109.4°
O1PPO2P110.6°109.5°
O1PPO3P111.1°109.5°
O1PPO5'113.3°109.5°
O2PPO3P108.5°109.4°
O2PPO5'110.0°109.5°
PO2PHO2P109.5°114.0°
O3PPO5'103.1°109.5°
PO5'C5'117.3°123.0°
C2N1C6120.9°121.2°
N1C2N3119.1°122.5°
N1C2H2120.5°118.7°
N1C6C5120.2°118.4°
N1C6N6120.0°120.8°
C2N3C4119.3°120.6°
N3C2H2120.4°118.8°
N3C4C5122.1°119.1°
N3C4N9130.6°134.9°
C5C4N9107.3°106.0°
C4C5C6118.3°118.1°
C4C5N7108.3°107.1°
C4N9C8109.8°107.4°
C4N9C1'122.1°126.3°
C6C5N7133.4°134.7°
C5C6N6119.8°120.8°
C5N7C8108.5°109.5°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
N7C8N9106.2°110.0°
N7C8H8126.9°125.0°
C8N9C1'128.2°126.3°
N9C8H8126.9°125.0°
N9C1'C2'108.1°110.6°
N9C1'O4'110.2°110.6°
N9C1'H1'110.7°110.5°
CACBCG106.3°109.5°
CBCAHA106.7°109.5°
CACBHB110.3°109.5°
CACBHBA110.3°109.5°
CBCGCD1118.4°120.0°
CBCGCD2121.3°120.0°
CGCBHB110.3°109.4°
CGCBHBA110.3°109.4°
CD1CGCD2120.3°120.1°
CGCD1CE1119.8°120.1°
CGCD1HD1120.1°120.0°
CGCD2CE2120.0°120.1°
CGCD2HD2120.0°119.9°
OHCZCE1118.4°120.1°
OHCZCE2121.2°120.1°
CZOHHOH109.5°114.0°
CE1CZCE2120.4°119.8°
CZCE1CD1119.8°119.9°
CZCE1HE1120.1°120.0°
CZCE2CD2119.6°120.0°
CZCE2HE2120.2°120.0°
C2'C1'O4'107.6°103.5°
C1'C2'O2'111.6°110.9°
C1'C2'C3'102.5°102.0°
C2'C1'H1'109.6°110.7°
C1'C2'H2'109.1°110.9°
C1'O4'C4'106.4°106.9°
O4'C1'H1'110.6°110.8°
O2'C2'C3'113.1°110.9°
O2'C2'H2'110.6°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'106.4°110.5°
C2'C3'C4'102.8°104.2°
C3'C2'H2'109.5°111.0°
C2'C3'H3'112.0°110.5°
O3'C3'C4'110.3°110.5°
O3'C3'H3'113.5°110.4°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'107.7°107.3°
C3'C4'C5'113.0°109.9°
C4'C3'H3'111.2°110.6°
C3'C4'H4'109.3°109.9°
O4'C4'C5'106.9°109.8°
O4'C4'H4'110.4°109.9°
C4'C5'O5'110.5°109.5°
C5'C4'H4'109.5°110.0°
C4'C5'H5'109.2°109.4°
C4'C5'H5'A109.2°109.4°
O5'C5'H5'109.2°109.5°
O5'C5'H5'A109.2°109.5°
CE1CD1HD1120.1°120.0°
CD1CE1HE1120.1°120.1°
CE2CD2HD2120.0°120.0°
CD2CE2HE2120.2°120.0°
HNNHNA109.5°111.0°
HN6N6HN6A109.5°120.0°
HBCBHBA109.5°109.4°
H5'C5'H5'A109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OCCAO3P120.7°179.8°
OCCAN64.3°20.0°
OCO3PP36.7°0.0°
OCCACB61.6°100.1°
OCCAHA178.0°139.9°
CCANCB126.4°120.0°
CCANHA117.1°120.0°
CACO3PP157.9°179.8°
CCACBHA116.4°120.0°
CCACBCG172.4°175.0°
CCANHN180.0°60.0°
CCANHNA60.0°176.1°
CCACBHB68.1°65.0°
CCACBHBA52.9°55.0°
O3PCCAN175.0°160.2°
CO3PPO1P28.6°55.0°
CO3PPO2P93.1°65.0°
CO3PPO5'150.3°175.0°
O3PCCACB59.2°79.7°
O3PCCAHA57.3°40.3°
NCACBHA117.1°119.9°
NCACBCG61.1°65.0°
CANHNHNA120.0°123.9°
NCACBHB58.4°55.0°
NCACBHBA179.4°175.0°
O1PPO2PO3P122.1°120.0°
O1PPO2PO5'125.9°120.1°
O1PPO3PO5'121.6°120.1°
O1PPO5'C5'177.3°55.0°
O1PPO2PHO2P0.0°179.9°
O2PPO3PO5'116.6°120.0°
O2PPO5'C5'53.0°65.1°
O3PPO5'C5'62.6°175.0°
O3PPO2PHO2P122.1°60.1°
PO5'C5'C4'143.0°180.0°
O5'PO2PHO2P125.9°59.9°
PO5'C5'H5'96.9°60.0°
PO5'C5'H5'A22.8°60.1°
N1C2N3H2180.0°180.0°
N1C2N3C40.8°0.0°
C2N1C6C50.4°0.0°
C2N1C6N6179.0°180.0°
C6N1C2N30.0°0.0°
N1C6C5C40.2°0.0°
N1C6C5N6179.3°180.0°
N1C6C5N7179.3°180.0°
C6N1C2H2180.0°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
C2N3C4C51.4°0.0°
C2N3C4N9179.8°179.9°
N3C4C5N9179.0°180.0°
N3C4C5C61.1°0.0°
N3C4C5N7179.6°180.0°
N3C4N9C8179.3°179.9°
N3C4N9C1'0.9°0.0°
C4N3C2H2179.2°180.0°
C4C5C6N7179.1°180.0°
C4C5C6N6179.5°180.0°
C4C5N7C80.6°0.0°
C5C4N9C80.4°0.0°
C5C4N9C1'179.8°180.0°
N9C4C5C6179.9°180.0°
N9C4C5N70.6°0.0°
C4N9C8N70.1°0.1°
C4N9C8C1'179.8°179.9°
C4N9C1'C2'120.3°85.0°
C4N9C1'O4'122.4°160.9°
C4N9C8H8180.0°180.0°
C4N9C1'H1'0.3°37.9°
C6C5N7C8179.7°179.9°
C5C6N6HN6179.4°180.0°
C5C6N6HN6A59.3°0.0°
N7C5C6N61.4°0.0°
C5N7C8N90.3°0.1°
C5N7C8H8179.7°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°179.9°
N7C8N9C1'179.8°180.0°
C8N9C1'C2'59.5°95.1°
C8N9C1'O4'57.9°19.0°
C8N9C1'H1'179.4°142.1°
N9C1'C2'O4'119.0°118.5°
N9C1'C2'H1'120.7°122.8°
N9C1'O4'H1'122.7°122.9°
N9C1'C2'O2'84.3°86.3°
N9C1'C2'C3'154.3°155.5°
N9C1'O4'C4'138.6°158.5°
C1'N9C8H80.2°0.1°
N9C1'C2'H2'38.3°37.3°
CACBCGHB119.5°120.0°
CACBCGHBA119.5°120.1°
CACBCGCD171.4°90.0°
CACBCGCD2107.1°90.3°
CBCANHN53.6°60.0°
CBCANHNA173.6°63.9°
CACBHBHBA121.5°120.0°
CBCGCD1CD2178.5°179.8°
CBCGCD1CE1179.4°180.0°
CBCGCD2CE2179.2°180.0°
CGCBCAHA56.0°55.0°
CGCBHBHBA121.5°119.9°
CBCGCD1HD10.6°0.0°
CBCGCD2HD20.8°0.0°
CGCD1CE1CZ0.6°0.0°
CGCD1CE1HD1180.0°180.0°
CD1CGCD2CE20.8°0.3°
CD1CGCBHB169.2°30.1°
CD1CGCBHBA48.1°150.0°
CD1CGCD2HD2179.2°179.7°
CGCD1CE1HE1179.4°179.7°
CGCD2CE2CZ0.4°0.0°
CD2CGCD1CE10.9°0.2°
CGCD2CE2HD2180.0°180.0°
CD2CGCBHB12.4°149.7°
CD2CGCBHBA133.4°29.8°
CD2CGCD1HD1179.1°179.8°
CGCD2CE2HE2179.5°179.8°
OHCZCE1CE2178.7°179.8°
OHCZCE1CD1178.5°180.0°
OHCZCE2CD2178.5°180.0°
OHCZCE1HE11.6°0.3°
OHCZCE2HE21.5°0.2°
CZCE1CD1HE1180.0°179.7°
CE1CZCE2CD20.2°0.2°
CE1CZOHHOH180.0°90.0°
CZCE1CD1HD1179.4°180.0°
CE1CZCE2HE2179.8°180.0°
CE2CZCE1CD10.3°0.2°
CZCE2CD2HE2180.0°179.8°
CE2CZOHHOH1.3°89.7°
CZCE2CD2HD2179.6°180.0°
CE2CZCE1HE1179.7°180.0°
C2'C1'O4'H1'119.6°118.6°
C1'C2'O2'C3'115.1°112.6°
C1'C2'O2'H2'121.7°123.7°
C1'C2'C3'H2'115.7°118.2°
C1'C2'C3'O3'82.2°97.8°
C1'C2'C3'C4'33.8°20.9°
C2'C1'O4'C4'21.0°40.1°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'H3'153.2°139.7°
O4'C1'C2'O2'156.7°155.2°
O4'C1'C2'C3'35.3°37.1°
C1'O4'C4'C3'1.0°26.5°
C1'O4'C4'C5'120.6°146.0°
O4'C1'C2'H2'80.7°81.2°
C1'O4'C4'H4'120.4°93.0°
O2'C2'C3'H2'123.9°123.6°
O2'C2'C3'O3'38.2°20.4°
O2'C2'C3'C4'154.2°139.1°
O2'C2'C1'H1'36.4°36.5°
O2'C2'C3'H3'86.4°102.2°
C2'C3'O3'C4'110.8°114.8°
C2'C3'O3'H3'123.7°122.5°
C2'C3'C4'H3'120.0°118.7°
C2'C3'C4'O4'22.6°2.0°
C2'C3'C4'C5'95.2°121.4°
C3'C2'C1'H1'85.0°81.7°
C3'C2'O2'HO2'64.9°67.4°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'H4'142.6°117.4°
O3'C3'C4'H3'126.9°122.6°
O3'C3'C4'O4'90.5°120.7°
O3'C3'C4'C5'151.7°119.9°
O3'C3'C2'H2'162.1°144.0°
O3'C3'C4'H4'29.5°1.3°
C3'C4'O4'C5'121.7°119.5°
C3'C4'O4'H4'119.3°119.5°
C3'C4'C5'H4'122.1°121.1°
C3'C4'C5'O5'53.6°175.0°
C4'C3'C2'H2'81.9°97.3°
C4'C3'O3'HO3'69.3°176.2°
C3'C4'C5'H5'173.7°55.0°
C3'C4'C5'H5'A66.6°65.0°
O4'C4'C5'H4'119.6°121.0°
O4'C4'C5'O5'64.7°67.1°
C4'O4'C1'H1'98.6°78.6°
O4'C4'C3'H3'142.6°116.7°
O4'C4'C5'H5'55.5°172.9°
O4'C4'C5'H5'A175.1°52.9°
C4'C5'O5'H5'120.2°120.0°
C4'C5'O5'H5'A120.1°120.0°
C5'C4'C3'H3'24.8°2.7°
C4'C5'H5'H5'A119.5°119.9°
O5'C5'C4'H4'175.7°53.9°
O5'C5'H5'H5'A119.6°120.0°
HNNCAHA62.9°180.0°
HNANCAHA57.1°56.1°
HACACBHB175.5°174.9°
HACACBHBA63.5°65.0°
H1'C1'C2'H2'159.0°160.1°
H2'C2'O2'HO2'58.3°56.4°
H2'C2'C3'H3'37.5°21.5°
H3'C3'O3'HO3'56.3°61.1°
H3'C3'C4'H4'97.3°123.9°
H4'C4'C5'H5'64.2°66.1°
H4'C4'C5'H5'A55.5°173.9°
HD1CD1CE1HE10.7°0.2°
HD2CD2CE2HE20.5°0.3°

222624

PDB entries from 2024-07-17

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