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SummaryGeometryRelated PDB entries

YA8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N01C02sing1.47Å1.50Å
N01C05sing1.47Å1.49Å
N01C15sing1.35Å1.38Å
C02C03sing1.54Å1.53Å
C03C04sing1.55Å1.57Å
C03C06sing1.54Å1.56Å
C04C05sing1.54Å1.52Å
C04C07sing1.53Å1.53Å
C06C07sing1.55Å1.56Å
C06C08sing1.54Å1.53Å
C07C10sing1.54Å1.51Å
C08N09sing1.47Å1.49Å
N09C10sing1.47Å1.48Å
N09C17sing1.35Å1.39Å
C15O16doub1.22Å1.26Å
C15C28sing1.48Å1.47Å
C17C18sing1.48Å1.49Å
C17O19doub1.22Å1.25Å
C18C20doub1.40Å1.44ÅAromatic
C18C22sing1.39Å1.41ÅAromatic
C20C21sing1.36Å1.39ÅAromatic
C21C24doub1.39Å1.41ÅAromatic
C22C23doub1.40Å1.42ÅAromatic
C23C24sing1.41Å1.39ÅAromatic
C23N27sing1.35Å1.37ÅAromatic
C24N25sing1.37Å1.42ÅAromatic
N25N26sing1.40Å1.36ÅAromatic
N26N27doub1.29Å1.34ÅAromatic
C28C29doub1.41Å1.44ÅAromatic
C28C31sing1.39Å1.37ÅAromatic
C29C30sing1.36Å1.37ÅAromatic
C30C33doub1.41Å1.43ÅAromatic
C31C32doub1.40Å1.41ÅAromatic
C32C33sing1.42Å1.42ÅAromatic
C32C37sing1.41Å1.43ÅAromatic
C33C34sing1.40Å1.41ÅAromatic
C34C35doub1.36Å1.38ÅAromatic
C35C36sing1.39Å1.43ÅAromatic
C35BR38sing1.89Å1.91Å
C36C37doub1.36Å1.37ÅAromatic
C02H1sing1.09Å1.10Å
C02H2sing1.09Å1.10Å
C04H3sing1.09Å1.10Å
C05H4sing1.09Å1.10Å
C05H5sing1.09Å1.10Å
C06H6sing1.09Å1.10Å
C07H7sing1.09Å1.10Å
C10H8sing1.09Å1.10Å
C10H9sing1.09Å1.10Å
C20H10sing1.08Å1.08Å
C21H11sing1.08Å1.08Å
C22H12sing1.08Å1.08Å
C03H13sing1.09Å1.10Å
C08H14sing1.09Å1.10Å
C08H15sing1.09Å1.10Å
N25H16sing0.97Å1.00Å
C29H17sing1.08Å1.08Å
C30H18sing1.08Å1.08Å
C31H19sing1.08Å1.08Å
C34H20sing1.08Å1.08Å
C36H21sing1.08Å1.08Å
C37H22sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C02N01C05112.2°109.3°
C02N01C15124.1°125.4°
N01C02C03105.6°108.0°
N01C02H1110.4°109.7°
N01C02H2110.4°109.8°
C05N01C15123.8°125.3°
N01C05C04103.8°106.7°
N01C05H4110.9°109.9°
N01C05H5110.8°110.0°
N01C15O16118.9°120.0°
N01C15C28121.1°120.0°
C02C03C04104.5°104.5°
C02C03C06115.5°113.2°
C03C02H1110.4°109.8°
C03C02H2110.4°109.8°
C02C03H13115.3°115.0°
C04C03C0688.9°87.1°
C03C04C05109.6°103.8°
C03C04C0790.5°87.2°
C03C04H3114.6°117.6°
C04C03H13114.5°116.6°
C03C06C0789.9°87.1°
C03C06C08118.6°113.2°
C03C06H6113.3°116.8°
C06C03H13114.7°116.8°
C05C04C07108.8°113.8°
C05C04H3115.4°115.0°
C04C05H4110.9°110.0°
C04C05H5110.9°110.0°
C04C07C0690.5°87.2°
C04C07C10110.6°113.8°
C07C04H3115.3°116.0°
C04C07H7115.1°116.0°
C07C06C08105.3°104.5°
C06C07C10107.6°103.7°
C07C06H6113.3°116.6°
C06C07H7114.7°116.6°
C06C08N09101.8°108.0°
C08C06H6113.7°115.0°
C06C08H14111.4°109.8°
C06C08H15111.4°109.8°
C07C10N09103.7°106.8°
C10C07H7115.5°115.7°
C07C10H8110.9°110.0°
C07C10H9110.9°110.0°
C08N09C10110.3°109.3°
C08N09C17122.9°125.3°
N09C08H14111.4°109.8°
N09C08H15111.3°109.8°
C10N09C17126.7°125.4°
N09C10H8110.9°110.0°
N09C10H9110.9°110.0°
N09C17C18124.0°120.0°
N09C17O19113.9°120.0°
O16C15C28119.9°120.0°
C15C28C29123.7°119.8°
C15C28C31117.2°119.7°
C18C17O19121.9°120.0°
C17C18C20117.1°119.9°
C17C18C22123.3°119.8°
C20C18C22119.5°120.3°
C18C20C21122.7°120.5°
C18C20H10118.6°119.8°
C18C22C23118.2°119.6°
C18C22H12120.9°120.3°
C20C21C24115.7°120.1°
C21C20H10118.6°119.7°
C20C21H11122.2°120.0°
C21C24C23123.8°120.2°
C21C24N25131.0°133.7°
C24C21H11122.1°119.9°
C22C23C24120.1°119.4°
C22C23N27130.8°133.0°
C23C22H12120.9°120.2°
C24C23N27109.1°107.6°
C23C24N25105.2°106.1°
C23N27N26107.7°110.1°
C24N25N26107.4°106.7°
C24N25H16126.3°126.6°
N25N26N27110.6°109.5°
N26N25H16126.3°126.7°
C29C28C31119.1°120.5°
C28C29C30120.8°120.8°
C28C29H17119.6°119.6°
C28C31C32121.5°119.4°
C28C31H19119.3°120.3°
C29C30C33120.0°120.1°
C30C29H17119.6°119.6°
C29C30H18120.0°120.0°
C30C33C32119.3°119.6°
C30C33C34122.1°121.1°
C33C30H18120.0°120.0°
C31C32C33119.3°119.5°
C31C32C37119.7°121.1°
C32C31H19119.2°120.3°
C33C32C37121.0°119.4°
C32C33C34118.5°119.3°
C32C37C36120.0°119.7°
C32C37H22120.0°120.2°
C33C34C35119.6°119.7°
C33C34H20120.2°120.1°
C34C35C36122.5°121.0°
C34C35BR38120.8°119.5°
C35C34H20120.2°120.1°
C36C35BR38116.8°119.5°
C35C36C37118.4°120.9°
C35C36H21120.8°119.5°
C37C36H21120.8°119.5°
C36C37H22120.0°120.1°
H1C02H2109.5°109.7°
H4C05H5109.5°110.0°
H8C10H9109.5°110.0°
H14C08H15109.5°109.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C02N01C05C15178.5°179.9°
N01C02C03H1119.4°119.6°
N01C02C03H2119.4°119.6°
N01C02C03C0418.3°15.9°
N01C02C03C0677.6°109.0°
C02N01C05C0415.8°18.1°
C02N01C15O160.0°4.6°
C02N01C15C28179.8°175.3°
N01C02H1H2121.8°120.7°
C02N01C05H4103.3°137.4°
C02N01C05H5134.9°101.2°
N01C02C03H13144.9°113.2°
C05N01C02C0322.2°1.2°
N01C05C04C033.4°27.4°
N01C05C04H4119.1°119.2°
N01C05C04H5119.1°119.4°
N01C05C04C0794.1°65.7°
C05N01C15O16178.4°175.4°
C05N01C15C281.5°4.6°
C05N01C02H1141.6°120.8°
C05N01C02H297.2°118.5°
N01C05C04H3134.5°157.1°
N01C05H4H5122.6°121.3°
C15N01C02C03159.3°178.8°
C15N01C05C04165.6°161.9°
N01C15O16C28179.9°180.0°
N01C15C28C2980.0°29.9°
N01C15C28C31101.8°150.4°
C15N01C02H139.9°59.2°
C15N01C02H281.4°61.5°
C15N01C05H475.3°42.6°
C15N01C05H546.5°78.7°
C02C03C04C06116.1°113.2°
C02C03C04H13127.1°128.1°
C02C03C06H13137.8°137.0°
C02C03C04C059.4°25.9°
C02C03C04C07119.6°87.9°
C02C03C06C07109.0°79.4°
C02C03C06C08143.6°176.1°
C03C02H1H2121.8°120.8°
C02C03C04H3122.2°154.1°
C02C03C06H66.4°39.0°
C04C03C06H13116.6°118.5°
C03C04C05C0797.5°93.0°
C03C04C05H3131.1°129.8°
C03C04C07H3117.6°119.4°
C04C03C06C073.4°25.1°
C04C03C06C08110.9°79.4°
C03C04C07C10105.5°128.9°
C04C03C02H1137.6°103.7°
C04C03C02H2101.1°135.5°
C03C04C05H4115.7°146.6°
C03C04C05H5122.5°92.0°
C04C03C06H6112.0°143.5°
C03C04C07H7121.3°93.2°
C06C03C04C05106.7°139.2°
C03C06C07C08119.8°113.2°
C03C06C07H6115.4°118.6°
C03C06C08H6137.0°137.9°
C03C06C07C10108.3°139.2°
C03C06C08N0971.4°109.0°
C06C03C02H141.8°10.6°
C06C03C02H2163.0°131.4°
C06C03C04H3121.7°92.6°
C03C06C07H7121.7°92.4°
C03C06C08H14169.8°131.4°
C03C06C08H1547.3°10.7°
C05C04C07H3131.5°136.8°
C05C04C07C06107.4°128.9°
C05C04C07C10143.6°127.3°
C04C05H4H5122.6°121.4°
C05C04C07H710.4°10.6°
C05C04C03H13136.5°102.1°
C04C07C06C10111.8°113.8°
C04C07C06H7118.1°117.7°
C04C07C06C08123.3°87.9°
C04C07C10H7133.0°138.1°
C04C07C10N0988.2°65.6°
C07C04C05H4146.8°53.6°
C07C04C05H525.0°175.0°
C04C07C06H6111.9°144.0°
C04C07C10H830.8°53.7°
C04C07C10H9152.7°175.0°
C07C04C03H13113.3°144.0°
C07C06C08H6124.6°129.1°
C06C07C10H7129.6°128.9°
C07C06C08N0927.0°15.9°
C06C07C10N099.1°27.4°
C06C07C04H3121.1°94.3°
C06C07C10H8128.2°146.7°
C06C07C10H9110.0°92.0°
C07C06C03H13113.2°143.6°
C07C06C08H1491.7°135.6°
C07C06C08H15145.8°103.7°
C08C06C07C1011.5°25.9°
C06C08N09H14118.8°119.6°
C06C08N09H15118.7°119.7°
C06C08N09C1035.1°1.2°
C06C08N09C17147.1°178.8°
C08C06C07H7118.6°154.4°
C08C06C03H135.8°39.0°
C06C08H14H15123.6°120.7°
C07C10N09C0828.1°18.1°
C07C10N09H8119.1°119.3°
C07C10N09H9119.1°119.4°
C07C10N09C17154.1°161.9°
C10C07C04H312.1°9.4°
C10C07C06H6136.3°102.2°
C07C10H8H9122.7°121.3°
C08N09C10C17177.8°180.0°
C08N09C17C18176.8°4.8°
C08N09C17O192.1°175.1°
N09C08C06H6151.6°113.2°
C08N09C10H8147.2°137.4°
C08N09C10H991.0°101.3°
N09C08H14H15123.6°120.7°
C10N09C17C185.7°175.2°
C10N09C17O19179.7°4.9°
N09C10C07H7138.7°156.3°
N09C10H8H9122.6°121.3°
C10N09C08H1483.7°118.5°
C10N09C08H15153.8°120.8°
N09C17C18O19174.3°179.9°
N09C17C18C2070.0°138.3°
N09C17C18C22112.6°42.0°
C17N09C10H835.0°42.6°
C17N09C10H986.8°78.7°
C17N09C08H1494.2°61.5°
C17N09C08H1528.3°59.2°
O16C15C28C29100.1°150.0°
O16C15C28C3178.0°29.7°
C15C28C29C31178.1°179.7°
C15C28C29C30178.6°180.0°
C15C28C31C32179.9°180.0°
C15C28C29H171.4°0.0°
C15C28C31H190.1°0.1°
C17C18C20C22177.4°179.7°
C17C18C20C21178.3°180.0°
C17C18C22C23177.8°180.0°
C17C18C20H101.7°0.0°
C17C18C22H122.2°0.0°
O19C17C18C20104.2°41.7°
O19C17C18C2273.1°138.1°
C18C20C21H10180.0°179.9°
C18C20C21C240.5°0.1°
C20C18C22C230.6°0.2°
C18C20C21H11179.5°180.0°
C20C18C22H12179.4°179.7°
C22C18C20C210.9°0.2°
C18C22C23H12180.0°180.0°
C18C22C23C240.0°0.0°
C18C22C23N27179.7°180.0°
C22C18C20H10179.1°179.7°
C20C21C24H11180.0°179.9°
C20C21C24C230.2°0.4°
C20C21C24N25179.5°179.9°
C21C24C23C220.4°0.3°
C21C24C23N25179.5°179.8°
C21C24C23N27179.4°179.7°
C21C24N25N26179.9°180.0°
C24C21C20H10179.5°180.0°
C21C24N25H160.1°0.0°
C22C23C24N27179.7°179.9°
C22C23C24N25179.9°179.9°
C22C23N27N26179.5°179.5°
C23C24N25N260.5°0.3°
C24C23N27N260.7°0.4°
C23C24C21H11179.8°179.7°
C24C23C22H12180.0°180.0°
C23C24N25H16179.5°179.7°
N27C23C24N250.2°0.1°
C23N27N26N251.1°0.6°
N27C23C22H120.3°0.0°
C24N25N26H16180.0°180.0°
C24N25N26N271.0°0.5°
N25C24C21H110.5°0.0°
N27N26N25H16179.0°179.5°
C28C29C30H17180.0°179.9°
C28C29C30C330.0°0.1°
C29C28C31C321.7°0.3°
C28C29C30H18180.0°180.0°
C29C28C31H19178.3°179.7°
C31C28C29C300.5°0.3°
C28C31C32H19180.0°179.9°
C28C31C32C332.4°0.1°
C28C31C32C37178.8°180.0°
C31C28C29H17179.5°179.7°
C29C30C33H18180.0°180.0°
C29C30C33C320.7°0.3°
C29C30C33C34179.7°179.9°
C30C33C32C311.8°0.3°
C30C33C32C34179.1°179.7°
C30C33C32C37179.4°179.8°
C30C33C34C35179.7°180.0°
C33C30C29H17180.0°180.0°
C30C33C34H200.3°0.1°
C31C32C33C37178.8°179.9°
C31C32C33C34179.1°180.0°
C31C32C37C36178.3°179.4°
C31C32C37H221.7°0.1°
C32C33C34C350.7°0.3°
C33C32C37C360.5°0.5°
C32C33C30H18179.3°179.7°
C33C32C31H19177.6°180.0°
C32C33C34H20179.3°179.8°
C33C32C37H22179.5°180.0°
C37C32C33C340.3°0.1°
C32C37C36C350.9°0.8°
C32C37C36H22180.0°179.5°
C37C32C31H191.2°0.1°
C32C37C36H21179.1°179.7°
C33C34C35H20180.0°179.9°
C33C34C35C360.3°0.0°
C33C34C35BR38179.7°180.0°
C34C33C30H180.3°0.0°
C34C35C36BR38179.5°180.0°
C34C35C36C370.5°0.5°
C34C35C36H21179.4°180.0°
C35C36C37H21180.0°179.5°
C36C35C34H20179.7°179.9°
C35C36C37H22179.1°179.7°
BR38C35C36C37178.9°179.5°
BR38C35C34H200.3°0.1°
BR38C35C36H211.1°0.0°
H1C02C03H1395.8°127.2°
H2C02C03H1325.5°6.5°
H3C04C05H415.4°83.6°
H3C04C05H5106.4°37.8°
H3C04C07H7121.1°147.4°
H3C04C03H134.9°26.1°
H6C06C07H76.2°26.2°
H6C06C03H13131.4°98.0°
H6C06C08H1432.8°6.5°
H6C06C08H1589.7°127.2°
H7C07C10H8102.2°84.4°
H7C07C10H919.6°36.9°
H10C20C21H110.5°0.1°
H17C29C30H180.0°0.0°
H21C36C37H221.0°0.2°

251174

PDB entries from 2026-03-25

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