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Summary Geometry Related PDB entries

Y84

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C05	C04	doub	1.36Å	1.39Å	Aromatic
C05	C06	sing	1.41Å	1.43Å	Aromatic
C04	C03	sing	1.39Å	1.40Å	Aromatic
C07	C06	doub	1.41Å	1.43Å	Aromatic
C07	C08	sing	1.36Å	1.39Å	Aromatic
C06	C11	sing	1.42Å	1.36Å	Aromatic
C03	C02	doub	1.36Å	1.39Å	Aromatic
C08	C09	doub	1.39Å	1.39Å	Aromatic
C11	C02	sing	1.41Å	1.42Å	Aromatic
C11	C10	doub	1.40Å	1.42Å	Aromatic
C02	F01	sing	1.35Å	1.36Å
C09	C10	sing	1.36Å	1.39Å	Aromatic
C10	H1	sing	1.08Å	1.08Å
C03	H2	sing	1.08Å	1.08Å
C04	H3	sing	1.08Å	1.08Å
C05	H4	sing	1.08Å	1.08Å
C07	H5	sing	1.08Å	1.08Å
C08	H6	sing	1.08Å	1.08Å
C09	H7	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C04	C05	C06	120.1°	119.7°
C05	C04	C03	120.1°	121.0°
C05	C04	H3	120.0°	119.5°
C04	C05	H4	119.9°	120.2°
C05	C06	C07	120.7°	121.3°
C05	C06	C11	119.7°	119.4°
C06	C05	H4	119.9°	120.1°
C04	C03	C02	119.7°	121.0°
C04	C03	H2	120.2°	119.5°
C03	C04	H3	120.0°	119.5°
C06	C07	C08	120.0°	119.7°
C07	C06	C11	119.6°	119.3°
C06	C07	H5	120.0°	120.1°
C07	C08	C09	120.2°	121.0°
C08	C07	H5	120.0°	120.2°
C07	C08	H6	119.9°	119.5°
C06	C11	C02	120.0°	119.3°
C06	C11	C10	120.3°	119.4°
C03	C02	C11	120.3°	119.6°
C03	C02	F01	120.8°	120.2°
C02	C03	H2	120.1°	119.5°
C08	C09	C10	119.9°	121.0°
C09	C08	H6	119.9°	119.5°
C08	C09	H7	120.1°	119.5°
C02	C11	C10	119.6°	121.3°
C11	C02	F01	118.9°	120.2°
C11	C10	C09	119.9°	119.7°
C11	C10	H1	120.0°	120.2°
C09	C10	H1	120.0°	120.2°
C10	C09	H7	120.0°	119.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C04	C05	C06	H4	180.0°	180.0°
C05	C04	C03	H3	180.0°	180.0°
C04	C05	C06	C07	179.8°	180.0°
C04	C05	C06	C11	0.1°	0.0°
C05	C04	C03	C02	0.2°	0.0°
C05	C04	C03	H2	179.8°	180.0°
C06	C05	C04	C03	0.2°	0.0°
C05	C06	C07	C11	179.7°	180.0°
C05	C06	C07	C08	179.9°	179.8°
C05	C06	C11	C02	0.1°	0.0°
C05	C06	C11	C10	179.9°	180.0°
C06	C05	C04	H3	179.8°	180.0°
C05	C06	C07	H5	0.1°	0.0°
C04	C03	C02	H2	180.0°	180.0°
C04	C03	C02	C11	0.2°	0.0°
C04	C03	C02	F01	180.0°	180.0°
C03	C04	C05	H4	179.8°	180.0°
C06	C07	C08	H5	180.0°	179.8°
C06	C07	C08	C09	0.3°	0.2°
C07	C06	C11	C02	179.8°	180.0°
C07	C06	C11	C10	0.2°	0.0°
C07	C06	C05	H4	0.2°	0.0°
C06	C07	C08	H6	179.8°	180.0°
C08	C07	C06	C11	0.2°	0.2°
C07	C08	C09	H6	180.0°	179.7°
C07	C08	C09	C10	0.3°	0.0°
C07	C08	C09	H7	179.7°	180.0°
C06	C11	C02	C03	0.1°	0.0°
C06	C11	C02	C10	180.0°	180.0°
C06	C11	C02	F01	180.0°	180.0°
C06	C11	C10	C09	0.3°	0.2°
C06	C11	C10	H1	179.7°	180.0°
C11	C06	C05	H4	179.9°	180.0°
C11	C06	C07	H5	179.8°	180.0°
C03	C02	C11	F01	179.8°	180.0°
C03	C02	C11	C10	179.9°	180.0°
C02	C03	C04	H3	179.8°	180.0°
C08	C09	C10	C11	0.3°	0.2°
C08	C09	C10	H7	180.0°	180.0°
C08	C09	C10	H1	179.7°	180.0°
C09	C08	C07	H5	179.7°	180.0°
C02	C11	C10	C09	179.7°	179.8°
C02	C11	C10	H1	0.3°	0.0°
C11	C02	C03	H2	179.8°	180.0°
C10	C11	C02	F01	0.0°	0.0°
C11	C10	C09	H1	180.0°	179.8°
C11	C10	C09	H7	179.7°	179.8°
F01	C02	C03	H2	0.0°	0.0°
C10	C09	C08	H6	179.7°	179.7°
H1	C10	C09	H7	0.3°	0.0°
H2	C03	C04	H3	0.2°	0.0°
H3	C04	C05	H4	0.2°	0.0°
H5	C07	C08	H6	0.2°	0.3°
H6	C08	C09	H7	0.3°	0.2°

227111

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