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SummaryGeometryRelated PDB entries

Y77

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N07N06doub0.00Å1.73Å
N06N05doub0.00Å1.53Å
N05C04sing0.00Å1.37Å
C04C03sing0.00Å1.44Å
O14P11doub0.00Å1.51Å
C03C02sing0.00Å1.39Å
C09O10sing0.00Å1.31Å
C09C08sing0.00Å1.54Å
C02C08doub0.00Å1.41Å
C02C01sing0.00Å1.55Å
P11O10sing0.00Å1.76Å
P11O13sing0.00Å1.54Å
P11O12sing0.00Å1.39Å
C01H1sing0.00Å1.10Å
C01H2sing0.00Å1.10Å
C01H3sing0.00Å1.10Å
C03H4sing0.00Å1.10Å
C03H5sing0.00Å1.10Å
C04H6sing0.00Å1.10Å
C04H7sing0.00Å1.10Å
C08H8sing0.00Å1.08Å
C09H9sing0.00Å1.10Å
C09H10sing0.00Å1.10Å
N07H11sing0.00Å1.00Å
O12H12sing0.00Å0.95Å
O13H13sing0.00Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N07N06N05179.3°90.0°
N06N07H11112.0°90.0°
N06N05C04122.2°90.0°
N05C04C03108.5°90.0°
N05C04H6109.7°90.0°
N05C04H7109.7°90.0°
C04C03C02114.8°90.0°
C04C03H4108.1°90.0°
C04C03H5108.1°90.0°
C03C04H6109.7°90.0°
C03C04H7109.7°90.0°
O14P11O10109.5°90.0°
O14P11O13109.5°90.0°
O14P11O12109.1°90.0°
C03C02C08121.1°90.0°
C03C02C01119.0°90.0°
C02C03H4108.1°90.0°
C02C03H5108.1°90.0°
O10C09C08109.8°90.0°
C09O10P11118.7°90.0°
O10C09H9109.4°90.0°
O10C09H10109.4°90.0°
C09C08C02121.0°90.0°
C09C08H8119.5°90.0°
C08C09H9109.4°90.0°
C08C09H10109.4°90.0°
C08C02C01119.9°90.0°
C02C08H8119.5°90.0°
C02C01H1109.5°90.0°
C02C01H2109.5°90.0°
C02C01H3109.5°90.0°
O10P11O13109.6°90.0°
O10P11O12109.5°90.0°
O13P11O12109.5°90.0°
P11O13H13109.5°90.0°
P11O12H12109.5°90.0°
H1C01H2109.5°90.0°
H1C01H3109.5°90.0°
H2C01H3109.4°90.0°
H4C03H5109.5°90.0°
H6C04H7109.4°90.0°
H9C09H10109.5°90.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N07N06N05C04177.1°90.0°
N06N05C04C03168.3°90.0°
N06N05C04H671.9°90.0°
N06N05C04H748.4°90.0°
N05N06N07H110.0°90.0°
N05C04C03H6119.9°90.0°
N05C04C03H7119.9°90.0°
N05C04C03C02126.8°90.0°
N05C04C03H4112.4°90.0°
N05C04C03H56.1°90.0°
N05C04H6H7120.4°90.0°
C04C03C02H4120.8°90.0°
C04C03C02H5120.8°90.0°
C04C03C02C0897.4°90.0°
C04C03C02C0182.6°90.0°
C04C03H4H5117.6°90.0°
C03C04H6H7120.4°90.0°
O14P11O10C0938.6°90.0°
O14P11O10O13120.2°90.0°
O14P11O10O12119.6°90.0°
O14P11O13O12119.7°90.0°
O14P11O12H120.0°90.0°
O14P11O13H130.0°90.0°
C03C02C08C090.1°90.0°
C03C02C08C01179.9°90.0°
C03C02C01H1180.0°90.0°
C03C02C01H260.0°90.0°
C03C02C01H360.0°90.0°
C02C03H4H5117.6°90.0°
C02C03C04H67.0°90.0°
C02C03C04H7113.3°90.0°
C03C02C08H8179.9°90.0°
O10C09C08H9120.0°90.0°
O10C09C08H10120.0°90.0°
O10C09C08C02171.1°90.0°
C09O10P11O13158.8°90.0°
C09O10P11O1281.1°90.0°
O10C09C08H88.9°90.0°
O10C09H9H10119.8°90.0°
C09C08C02H8180.0°90.0°
C09C08C02C01179.8°90.0°
C08C09O10P11161.1°90.0°
C08C09H9H10119.9°90.0°
C08C02C01H10.1°90.0°
C08C02C01H2120.1°90.0°
C08C02C01H3119.9°90.0°
C08C02C03H4141.8°90.0°
C08C02C03H523.3°90.0°
C02C08C09H968.9°90.0°
C02C08C09H1051.1°90.0°
C02C01H1H2120.0°90.0°
C02C01H1H3120.0°90.0°
C02C01H2H3120.0°90.0°
C01C02C03H438.1°90.0°
C01C02C03H5156.6°90.0°
C01C02C08H80.2°90.0°
O10P11O13O12120.1°90.0°
P11O10C09H978.8°90.0°
P11O10C09H1041.1°90.0°
O10P11O12H12119.9°90.0°
O10P11O13H13120.2°90.0°
O13P11O12H12119.9°90.0°
O12P11O13H13119.6°90.0°
H1C01H2H3120.0°90.0°
H4C03C04H6127.8°90.0°
H4C03C04H77.5°90.0°
H5C03C04H6113.8°90.0°
H5C03C04H7126.0°90.0°
H8C08C09H9111.1°90.0°
H8C08C09H10128.9°90.0°

246704

PDB entries from 2025-12-24

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