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Y6W

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2C1sing1.53Å1.52Å
C1O5sing1.43Å1.44Å
C1CAKsing1.53Å1.53Å
C1H1sing1.09Å1.10Å
O2C2sing1.43Å1.43Å
C2C3sing1.53Å1.52Å
C2H2sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
O3C3sing1.43Å1.43Å
C3C4sing1.53Å1.52Å
C3H3sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
O4C4sing1.43Å1.43Å
C4C5sing1.53Å1.52Å
C4H4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
O5C5sing1.43Å1.44Å
C5C6sing1.53Å1.53Å
C5H5sing1.09Å1.10Å
O6C6sing1.43Å1.43Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
O6HO6sing0.97Å0.95Å
C2'C1'sing1.55Å1.52Å
O4'C1'sing1.44Å1.43Å
C1'NAZsing1.47Å1.48Å
C1'H1'sing1.09Å1.10Å
C3'C2'sing1.55Å1.52Å
C2'O2'sing1.43Å1.43Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O3'C3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.52Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C5'C4'sing1.53Å1.53Å
C4'O4'sing1.44Å1.43Å
C4'H4'sing1.09Å1.10Å
O5'C5'sing1.43Å1.43Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
O5'PANsing1.61Å1.61Å
CAKCALsing1.53Å1.53Å
CAKHAKsing1.09Å1.10Å
CAKHAKAsing1.09Å1.10Å
CALCAMsing1.53Å1.53Å
CALHALsing1.09Å1.10Å
CALHALAsing1.09Å1.10Å
CAMPANsing1.82Å1.80Å
CAMHAMsing1.09Å1.10Å
CAMHAMAsing1.09Å1.10Å
OBHPANdoub1.48Å1.48Å
PANOAOsing1.61Å1.48Å
OAOHOAOsing0.97Å0.95Å
CBBNAZsing1.37Å1.40Å
NAZCBAsing1.35Å1.34Å
CBAOBEdoub1.22Å1.36Å
CBANBFsing1.35Å1.34Å
CBBCBCdoub1.35Å1.39Å
CBBHBBsing1.08Å1.08Å
CBCCBDsing1.41Å1.39Å
CBCHBCsing1.08Å1.08Å
CBDNBFsing1.35Å1.34Å
CBDOBGdoub1.22Å1.36Å
NBFHNBFsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O5109.9°109.4°
C2C1CAK109.6°109.5°
C2C1H1108.5°109.5°
C1C2O2109.5°109.5°
C1C2C3109.7°109.2°
C1C2H2109.0°109.5°
O5C1CAK110.8°109.4°
O5C1H1109.6°109.5°
C1O5C5111.1°114.1°
CAKC1H1108.4°109.5°
C1CAKCAL109.5°109.5°
C1CAKHAK109.5°109.5°
C1CAKHAKA109.5°109.5°
O2C2C3109.5°109.5°
O2C2H2110.2°109.6°
C2O2HO2109.5°114.0°
C3C2H2109.0°109.5°
C2C3O3109.5°109.6°
C2C3C4109.4°109.0°
C2C3H3109.1°109.6°
O3C3C4109.5°109.6°
O3C3H3110.3°109.6°
C3O3HO3109.5°114.0°
C4C3H3109.1°109.5°
C3C4O4109.5°109.5°
C3C4C5109.3°109.2°
C3C4H4109.1°109.6°
O4C4C5109.5°109.5°
O4C4H4110.3°109.6°
C4O4HO4109.5°114.0°
C5C4H4109.1°109.5°
C4C5O5109.7°109.4°
C4C5C6109.5°109.5°
C4C5H5109.1°109.5°
O5C5C6109.5°109.5°
O5C5H5110.2°109.5°
C6C5H5108.9°109.5°
C5C6O6109.5°109.5°
C5C6H6109.4°109.5°
C5C6H6A109.5°109.4°
O6C6H6109.5°109.4°
O6C6H6A109.4°109.5°
C6O6HO6109.5°114.0°
H6C6H6A109.5°109.5°
C2'C1'O4'104.0°103.6°
C2'C1'NAZ111.0°110.6°
C2'C1'H1'110.1°110.6°
C1'C2'C3'104.1°102.1°
C1'C2'O2'109.5°110.9°
C1'C2'H2'110.7°111.0°
O4'C1'NAZ109.6°110.6°
O4'C1'H1'111.4°110.7°
C1'O4'C4'104.0°106.9°
NAZC1'H1'110.7°110.5°
C1'NAZCBB119.9°119.7°
C1'NAZCBA120.0°119.7°
C3'C2'O2'109.5°110.9°
C3'C2'H2'110.7°111.0°
C2'C3'O3'109.5°110.5°
C2'C3'C4'104.1°104.2°
C2'C3'H3'110.7°110.5°
O2'C2'H2'112.0°110.8°
C2'O2'HO2'109.5°114.0°
O3'C3'C4'109.5°110.5°
O3'C3'H3'112.0°110.5°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'110.7°110.5°
C3'C4'C5'109.5°109.9°
C3'C4'O4'104.0°107.4°
C3'C4'H4'110.8°109.9°
C5'C4'O4'109.5°109.9°
C5'C4'H4'110.7°110.0°
C4'C5'O5'109.5°109.5°
C4'C5'H5'109.4°109.4°
C4'C5'H5'A109.5°109.5°
O4'C4'H4'112.1°109.7°
O5'C5'H5'109.5°109.5°
O5'C5'H5'A109.5°109.5°
C5'O5'PAN120.0°123.0°
H5'C5'H5'A109.5°109.5°
O5'PANCAM101.7°109.5°
O5'PANOBH108.1°109.5°
O5'PANOAO108.1°109.5°
CALCAKHAK109.4°109.5°
CALCAKHAKA109.5°109.4°
CAKCALCAM109.5°109.5°
CAKCALHAL109.5°109.5°
CAKCALHALA109.5°109.5°
HAKCAKHAKA109.5°109.4°
CAMCALHAL109.5°109.5°
CAMCALHALA109.5°109.5°
CALCAMPAN109.5°109.5°
CALCAMHAM109.4°109.5°
CALCAMHAMA109.5°109.5°
HALCALHALA109.4°109.4°
PANCAMHAM109.5°109.5°
PANCAMHAMA109.4°109.4°
CAMPANOBH108.9°109.5°
CAMPANOAO108.9°109.4°
HAMCAMHAMA109.5°109.5°
OBHPANOAO119.7°109.4°
PANOAOHOAO109.5°114.0°
CBBNAZCBA120.1°120.6°
NAZCBBCBC118.7°119.7°
NAZCBBHBB120.6°120.1°
NAZCBAOBE119.6°119.5°
NAZCBANBF120.9°120.9°
OBECBANBF119.5°119.5°
CBANBFCBD121.3°120.2°
CBANBFHNBF119.4°119.9°
CBCCBBHBB120.7°120.2°
CBBCBCCBD118.8°119.1°
CBBCBCHBC120.6°120.4°
CBDCBCHBC120.6°120.5°
CBCCBDNBF120.2°119.4°
CBCCBDOBG119.9°120.3°
NBFCBDOBG119.9°120.2°
CBDNBFHNBF119.3°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O5CAK121.3°120.0°
C2C1O5H1119.1°120.0°
C2C1CAKH1118.3°120.1°
C1C2O2C3120.3°119.7°
C1C2O2H2119.8°120.2°
C1C2C3H2119.2°119.9°
C1C2O2HO2180.0°179.9°
C1C2C3O3175.4°176.9°
C1C2C3C455.5°57.0°
C1C2C3H363.8°62.9°
C2C1O5C562.2°61.1°
C2C1CAKCAL158.2°175.1°
C2C1CAKHAK81.9°55.0°
C2C1CAKHAKA38.1°64.9°
O5C1CAKH1120.3°120.0°
O5C1C2O2178.1°177.5°
O5C1C2C358.0°57.6°
O5C1C2H261.3°62.3°
C1O5C5C463.1°61.1°
C1O5C5C6176.8°178.9°
C1O5C5H557.0°58.9°
O5C1CAKCAL36.7°65.0°
O5C1CAKHAK156.7°175.0°
O5C1CAKHAKA83.3°55.0°
CAKC1C2O256.1°57.5°
CAKC1C2C364.0°62.4°
CAKC1C2H2176.7°177.7°
CAKC1O5C559.1°58.9°
C1CAKCALHAK120.0°120.1°
C1CAKCALHAKA120.0°120.0°
C1CAKHAKHAKA120.0°120.0°
C1CAKCALCAM152.8°180.0°
C1CAKCALHAL32.8°59.9°
C1CAKCALHALA87.2°60.0°
H1C1C2O262.1°62.5°
H1C1C2C3177.7°177.6°
H1C1C2H258.5°57.7°
H1C1O5C5178.7°178.9°
H1C1CAKCAL83.6°55.0°
H1C1CAKHAK36.4°65.0°
H1C1CAKHAKA156.4°175.0°
O2C2C3H2120.6°120.2°
O2C2C3O364.4°63.2°
O2C2C3C4175.6°176.9°
O2C2C3H356.3°57.0°
C3C2O2HO259.7°60.4°
C2C3O3C4119.9°119.6°
C2C3O3H3120.0°120.2°
C2C3C4H3119.3°119.9°
C2C3O3HO3180.0°180.0°
C2C3C4O463.8°62.9°
C2C3C4C556.2°57.0°
C2C3C4H4175.4°176.8°
H2C2O2HO260.2°59.8°
H2C2C3O356.2°57.0°
H2C2C3C463.8°62.9°
H2C2C3H3177.0°177.2°
O3C3C4H3120.8°120.2°
O3C3C4O456.2°57.0°
O3C3C4C5176.2°176.9°
O3C3C4H464.6°63.3°
C4C3O3HO360.1°60.4°
C3C4O4C5119.8°119.7°
C3C4O4H4120.1°120.2°
C3C4C5H4119.2°119.9°
C3C4O4HO4180.0°180.0°
C3C4C5O559.6°57.6°
C3C4C5C6179.7°177.6°
C3C4C5H561.2°62.4°
H3C3O3HO359.9°59.8°
H3C3C4O4177.0°177.2°
H3C3C4C563.1°62.9°
H3C3C4H456.1°57.0°
O4C4C5H4120.8°120.2°
O4C4C5O560.4°62.3°
O4C4C5C659.7°57.7°
O4C4C5H5178.8°177.7°
C5C4O4HO460.2°60.3°
C4C5O5C6120.1°120.0°
C4C5O5H5120.1°120.0°
C4C5C6H5119.2°120.0°
C4C5C6O680.1°175.0°
C4C5C6H6159.9°55.0°
C4C5C6H6A39.9°65.0°
H4C4O4HO459.9°59.8°
H4C4C5O5178.8°177.5°
H4C4C5C661.1°62.5°
H4C4C5H558.1°57.5°
O5C5C6H5120.6°120.0°
O5C5C6O640.1°65.0°
O5C5C6H679.9°175.0°
O5C5C6H6A160.1°55.0°
C5C6O6H6120.0°120.0°
C5C6O6H6A120.0°120.0°
C5C6H6H6A120.0°120.0°
C5C6O6HO6180.0°179.9°
H5C5C6O6160.7°55.0°
H5C5C6H640.7°65.0°
H5C5C6H6A79.3°175.0°
O6C6H6H6A120.0°120.0°
H6C6O6HO660.0°60.0°
H6AC6O6HO660.0°59.9°
C2'C1'O4'NAZ118.7°118.5°
C2'C1'O4'H1'118.5°118.6°
C2'C1'NAZH1'122.5°122.8°
C1'C2'C3'O2'117.0°118.1°
C1'C2'C3'H2'119.0°118.3°
C1'C2'O2'H2'123.2°123.7°
C1'C2'O2'HO2'180.0°179.9°
C1'C2'C3'O3'117.1°97.8°
C1'C2'C3'C4'0.0°20.9°
C1'C2'C3'H3'118.9°139.6°
C2'C1'O4'C4'43.4°39.9°
C2'C1'NAZCBB92.7°63.1°
C2'C1'NAZCBA87.4°117.2°
O4'C1'NAZH1'123.2°123.0°
O4'C1'C2'C3'25.8°37.0°
O4'C1'C2'O2'142.8°155.1°
O4'C1'C2'H2'93.2°81.3°
C1'O4'C4'C3'43.5°26.3°
C1'O4'C4'C5'160.4°145.8°
C1'O4'C4'H4'76.3°93.1°
O4'C1'NAZCBB21.6°51.1°
O4'C1'NAZCBA158.3°128.6°
NAZC1'C2'C3'143.6°155.5°
NAZC1'C2'O2'99.4°86.3°
NAZC1'C2'H2'24.6°37.3°
NAZC1'O4'C4'162.1°158.4°
C1'NAZCBBCBA180.0°179.7°
C1'NAZCBAOBE0.0°0.0°
C1'NAZCBANBF180.0°179.9°
C1'NAZCBBCBC180.0°179.9°
C1'NAZCBBHBB0.0°0.0°
H1'C1'C2'C3'93.6°81.7°
H1'C1'C2'O2'23.4°36.5°
H1'C1'C2'H2'147.4°160.1°
H1'C1'O4'C4'75.1°78.8°
H1'C1'NAZCBB144.8°174.1°
H1'C1'NAZCBA35.2°5.6°
C3'C2'O2'H2'123.2°123.7°
C3'C2'O2'HO2'66.4°67.3°
C2'C3'O3'C4'113.5°114.8°
C2'C3'O3'H3'123.2°122.6°
C2'C3'C4'H3'119.0°118.7°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'C5'142.9°121.4°
C2'C3'C4'O4'25.9°1.9°
C2'C3'C4'H4'94.7°117.4°
O2'C2'C3'O3'0.1°20.4°
O2'C2'C3'C4'116.9°139.1°
O2'C2'C3'H3'124.1°102.3°
H2'C2'O2'HO2'56.8°56.4°
H2'C2'C3'O3'123.9°144.0°
H2'C2'C3'C4'119.1°97.3°
H2'C2'C3'H3'0.1°21.3°
O3'C3'C4'H3'124.0°122.6°
O3'C3'C4'C5'100.1°119.9°
O3'C3'C4'O4'143.0°120.6°
O3'C3'C4'H4'22.3°1.3°
C4'C3'O3'HO3'66.4°176.2°
C3'C4'C5'O4'113.4°118.0°
C3'C4'C5'H4'122.5°121.1°
C3'C4'O4'H4'119.8°119.4°
C3'C4'C5'O5'46.3°175.0°
C3'C4'C5'H5'166.3°55.0°
C3'C4'C5'H5'A73.7°65.0°
H3'C3'O3'HO3'56.8°61.2°
H3'C3'C4'C5'23.9°2.8°
H3'C3'C4'O4'93.1°116.8°
H3'C3'C4'H4'146.3°123.9°
C5'C4'O4'H4'123.3°121.1°
C4'C5'O5'H5'120.0°119.9°
C4'C5'O5'H5'A120.0°120.0°
C4'C5'H5'H5'A120.0°120.0°
C4'C5'O5'PAN112.7°180.0°
O4'C4'C5'O5'67.1°67.0°
O4'C4'C5'H5'52.9°173.0°
O4'C4'C5'H5'A172.9°53.0°
H4'C4'C5'O5'168.8°53.9°
H4'C4'C5'H5'71.2°66.1°
H4'C4'C5'H5'A48.8°173.9°
O5'C5'H5'H5'A120.0°120.1°
C5'O5'PANCAM74.4°175.0°
C5'O5'PANOBH171.1°55.0°
C5'O5'PANOAO40.2°65.0°
H5'C5'O5'PAN7.3°60.0°
H5'AC5'O5'PAN127.3°60.0°
O5'PANCAMCAL55.3°175.0°
O5'PANCAMOBH113.9°120.1°
O5'PANCAMOAO114.0°120.0°
O5'PANCAMHAM64.7°55.0°
O5'PANCAMHAMA175.3°65.0°
O5'PANOBHOAO124.1°120.0°
O5'PANOAOHOAO124.1°60.0°
CALCAKHAKHAKA120.0°119.9°
CAKCALCAMHAL120.0°120.1°
CAKCALCAMHALA120.0°120.0°
CAKCALHALHALA120.0°120.0°
CAKCALCAMPAN81.7°180.0°
CAKCALCAMHAM158.3°60.0°
CAKCALCAMHAMA38.3°60.0°
HAKCAKCALCAM87.2°59.9°
HAKCAKCALHAL152.8°180.0°
HAKCAKCALHALA32.8°60.1°
HAKACAKCALCAM32.8°60.0°
HAKACAKCALHAL87.2°60.1°
HAKACAKCALHALA152.8°180.0°
CAMCALHALHALA120.0°119.9°
CALCAMPANHAM120.0°120.0°
CALCAMPANHAMA120.0°120.0°
CALCAMHAMHAMA120.0°120.0°
CALCAMPANOBH58.6°55.0°
CALCAMPANOAO169.3°65.0°
HALCALCAMPAN38.4°60.0°
HALCALCAMHAM81.6°180.0°
HALCALCAMHAMA158.4°60.0°
HALACALCAMPAN158.3°59.9°
HALACALCAMHAM38.3°60.1°
HALACALCAMHAMA81.7°179.9°
PANCAMHAMHAMA120.0°120.0°
CAMPANOBHOAO126.1°120.0°
CAMPANOAOHOAO126.1°60.0°
HAMCAMPANOBH178.6°65.0°
HAMCAMPANOAO49.3°175.0°
HAMACAMPANOBH61.4°175.0°
HAMACAMPANOAO70.7°55.0°
OBHPANOAOHOAO0.0°180.0°
CBBNAZCBAOBE180.0°179.7°
CBBNAZCBANBF0.0°0.2°
NAZCBBCBCHBB180.0°179.9°
NAZCBBCBCCBD0.0°0.0°
NAZCBBCBCHBC180.0°180.0°
NAZCBAOBENBF180.0°179.9°
CBANAZCBBCBC0.0°0.2°
CBANAZCBBHBB180.0°179.7°
NAZCBANBFCBD0.1°0.0°
NAZCBANBFHNBF179.9°180.0°
OBECBANBFCBD180.0°180.0°
OBECBANBFHNBF0.1°0.1°
CBANBFCBDCBC0.1°0.3°
CBANBFCBDHNBF180.0°180.0°
CBANBFCBDOBG180.0°179.9°
CBBCBCCBDHBC180.0°180.0°
CBBCBCCBDNBF0.0°0.3°
CBBCBCCBDOBG180.0°180.0°
HBBCBBCBCCBD180.0°179.9°
HBBCBBCBCHBC0.0°0.1°
CBCCBDNBFOBG179.9°179.7°
CBCCBDNBFHNBF179.9°179.7°
HBCCBCCBDNBF179.9°179.7°
HBCCBCCBDOBG0.0°0.0°
OBGCBDNBFHNBF0.0°0.0°

222624

PDB entries from 2024-07-17

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