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SummaryGeometryRelated PDB entries

Y6R

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N01C02sing1.45Å1.43Å
C02C03sing1.52Å1.50Å
N01C04sing1.46Å1.43Å
C04C05sing1.50Å1.52Å
C03C06sing1.49Å1.55Å
C05C07sing1.49Å1.55Å
C06C07sing1.51Å1.46Å
C07C08sing1.54Å1.57Å
C08N09sing1.48Å1.46Å
C06C10sing1.56Å1.54Å
N09C10sing1.48Å1.45Å
N09C13sing1.35Å1.45Å
C13C14sing1.48Å1.50Å
C13O15doub1.22Å1.20Å
C14C16doub1.40Å1.41ÅAromatic
C16C17sing1.36Å1.40ÅAromatic
C14C18sing1.39Å1.39ÅAromatic
C18C19doub1.40Å1.42ÅAromatic
C17C20doub1.39Å1.43ÅAromatic
C19C20sing1.41Å1.36ÅAromatic
C20N21sing1.37Å1.39ÅAromatic
N21N22sing1.40Å1.37ÅAromatic
C19N23sing1.35Å1.38ÅAromatic
N22N23doub1.29Å1.38ÅAromatic
N01C24sing1.35Å1.49Å
C24O25doub1.22Å1.25Å
C24C26sing1.46Å1.51Å
C26C27doub1.35Å1.38Å
C27C28sing1.47Å1.52Å
C28C29doub1.40Å1.41ÅAromatic
C29C30sing1.38Å1.40ÅAromatic
C30C31doub1.39Å1.41ÅAromatic
C31C32sing1.39Å1.41ÅAromatic
C28C33sing1.40Å1.40ÅAromatic
C32C33doub1.38Å1.40ÅAromatic
C31O34sing1.36Å1.37Å
O34C35sing1.43Å1.36Å
C35F36sing1.40Å1.32Å
C35F37sing1.40Å1.33Å
C35F38sing1.40Å1.33Å
C02H39sing1.09Å1.10Å
C02H40sing1.09Å1.10Å
C04H44sing1.09Å1.10Å
C04H43sing1.09Å1.10Å
C05H45sing1.09Å1.10Å
C05H46sing1.09Å1.10Å
C06H11sing1.09Å1.10Å
C07H12sing1.09Å1.10Å
C10H49sing1.09Å1.10Å
C10H50sing1.09Å1.10Å
C16H51sing1.08Å1.08Å
C17H52sing1.08Å1.08Å
C18H53sing1.08Å1.08Å
C26H55sing1.08Å1.08Å
C27H56sing1.08Å1.08Å
C03H41sing1.09Å1.10Å
C03H42sing1.09Å1.10Å
C08H48sing1.09Å1.10Å
C08H47sing1.09Å1.10Å
N21H54sing0.97Å1.00Å
C29H57sing1.08Å1.08Å
C30H58sing1.08Å1.08Å
C32H59sing1.08Å1.08Å
C33H60sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N01C02C03114.7°109.9°
C02N01C04126.9°121.2°
C02N01C24116.0°119.4°
N01C02H39108.1°109.4°
N01C02H40108.1°109.4°
C02C03C06115.9°114.8°
C03C02H39108.1°109.4°
C03C02H40108.1°109.4°
C02C03H41107.9°108.4°
C02C03H42107.8°108.5°
N01C04C05110.7°113.4°
C04N01C24117.0°119.4°
N01C04H44109.2°108.7°
N01C04H43109.1°108.8°
C04C05C07110.7°116.5°
C05C04H44109.2°108.7°
C05C04H43109.2°108.7°
C04C05H45109.1°108.1°
C04C05H46109.2°108.1°
C03C06C07118.7°116.6°
C03C06C10114.3°108.9°
C03C06H11105.4°109.2°
C06C03H41107.8°108.4°
C06C03H42107.8°108.5°
C05C07C06118.8°118.9°
C05C07C08110.6°112.8°
C07C05H45109.2°108.0°
C07C05H46109.1°108.0°
C05C07H12108.3°106.5°
C06C07C08101.1°106.3°
C07C06C10105.6°102.6°
C07C06H11106.4°109.7°
C06C07H12109.4°106.2°
C07C08N09105.2°106.3°
C08C07H12108.0°105.1°
C07C08H48110.5°110.1°
C07C08H47110.5°110.1°
C08N09C10109.9°105.9°
C08N09C13121.9°127.0°
N09C08H48110.5°110.1°
N09C08H47110.6°110.1°
C06C10N09104.2°102.8°
C10C06H11105.5°109.6°
C06C10H49110.7°110.8°
C06C10H50110.8°110.7°
C10N09C13128.2°127.0°
N09C10H49110.8°110.8°
N09C10H50110.8°110.7°
N09C13C14127.0°120.0°
N09C13O15115.0°120.1°
C14C13O15118.0°119.9°
C13C14C16123.7°120.0°
C13C14C18116.7°119.8°
C14C16C17119.5°120.5°
C16C14C18119.6°120.2°
C14C16H51120.2°119.7°
C16C17C20120.3°120.1°
C17C16H51120.2°119.8°
C16C17H52119.9°119.9°
C14C18C19120.9°119.6°
C14C18H53119.5°120.2°
C18C19C20120.1°119.4°
C18C19N23131.2°133.0°
C19C18H53119.6°120.2°
C17C20C19119.6°120.2°
C17C20N21132.5°133.7°
C20C17H52119.9°119.9°
C19C20N21107.9°106.1°
C20C19N23108.7°107.6°
C20N21N22107.3°106.7°
C20N21H54126.4°126.7°
N21N22N23109.0°109.5°
N22N21H54126.3°126.7°
C19N23N22107.2°110.1°
N01C24O25121.0°120.0°
N01C24C26120.0°120.0°
O25C24C26119.0°120.0°
C24C26C27119.2°120.0°
C24C26H55120.4°120.0°
C26C27C28118.2°120.0°
C27C26H55120.4°120.0°
C26C27H56120.9°120.0°
C27C28C29119.2°120.1°
C27C28C33119.0°120.1°
C28C27H56120.9°120.0°
C28C29C30119.3°119.9°
C29C28C33121.7°119.8°
C28C29H57120.4°120.1°
C29C30C31119.4°120.1°
C30C29H57120.3°120.0°
C29C30H58120.3°120.0°
C30C31C32120.9°120.2°
C30C31O34119.4°119.9°
C31C30H58120.3°119.9°
C31C32C33119.7°120.1°
C32C31O34119.7°119.9°
C31C32H59120.1°119.9°
C28C33C32118.9°119.9°
C28C33H60120.5°120.0°
C33C32H59120.1°120.0°
C32C33H60120.6°120.0°
C31O34C35118.1°117.0°
O34C35F36108.9°109.5°
O34C35F37110.4°109.5°
O34C35F38108.7°109.5°
F36C35F37109.2°109.4°
F36C35F38110.2°109.5°
F37C35F38109.4°109.4°
H39C02H40109.5°109.5°
H44C04H43109.5°108.6°
H45C05H46109.5°107.9°
H49C10H50109.5°110.7°
H41C03H42109.5°108.2°
H48C08H47109.5°110.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N01C02C03H39120.8°120.1°
N01C02C03H40120.8°120.1°
C02N01C04C24176.9°179.9°
C02N01C04C0521.7°75.0°
N01C02C03C0676.1°73.9°
C02N01C24O25178.1°5.5°
C02N01C24C261.4°174.5°
N01C02H39H40117.6°119.8°
C02N01C04H4498.5°164.0°
C02N01C04H43141.9°46.0°
N01C02C03H41163.0°47.4°
N01C02C03H4244.8°164.6°
C03C02N01C0453.9°61.8°
C02C03C06H41120.9°121.3°
C02C03C06H42120.9°121.5°
C02C03C06C0750.5°82.4°
C02C03C06C1075.2°162.2°
C03C02N01C24129.2°118.3°
C03C02H39H40117.6°119.8°
C02C03C06H11169.4°42.5°
C02C03H41H42117.1°117.4°
N01C04C05H44120.2°121.0°
N01C04C05H43120.2°121.1°
N01C04C05C0780.2°78.7°
C04N01C24O250.8°174.4°
C04N01C24C26178.7°5.5°
C04N01C02H3966.9°178.2°
C04N01C02H40174.6°58.3°
N01C04H44H43119.4°118.1°
N01C04C05H45159.6°159.6°
N01C04C05H4640.0°43.1°
C04C05C07H45120.2°121.8°
C04C05C07H46120.2°121.8°
C04C05C07C0676.7°37.1°
C04C05C07C08167.0°162.7°
C05C04N01C24155.3°105.1°
C05C04H44H43119.5°118.0°
C04C05H45H46119.4°116.6°
C04C05C07H1248.8°82.5°
C03C06C07C0545.8°33.1°
C03C06C07C10129.7°118.9°
C03C06C07H11118.5°124.7°
C03C06C07C08167.0°95.5°
C03C06C10H11115.3°119.4°
C03C06C10N09163.4°86.0°
C06C03C02H3944.7°166.0°
C06C03C02H40163.2°46.2°
C03C06C07H1279.2°152.9°
C03C06C10H4944.2°32.4°
C03C06C10H5077.5°155.6°
C06C03H41H42117.1°117.4°
C05C07C06C08121.2°128.6°
C05C07C06H12125.0°119.8°
C05C07C08H12118.3°115.6°
C05C07C08N0996.0°132.6°
C05C07C06C1084.0°152.0°
C07C05C04H4439.9°160.4°
C07C05C04H43159.6°42.4°
C07C05H45H46119.4°116.5°
C05C07C06H11164.2°91.6°
C05C07C08H48144.7°108.2°
C05C07C08H4723.4°13.4°
C06C07C08H12114.8°112.3°
C06C07C08N0930.8°0.5°
C07C06C10H11112.4°116.5°
C07C06C10N0931.1°38.1°
C06C07C05H45163.1°158.9°
C06C07C05H4643.5°84.6°
C07C06C10H4988.1°156.5°
C07C06C10H50150.2°80.3°
C07C06C03H41171.4°38.9°
C07C06C03H4270.4°156.1°
C06C07C08H4888.5°119.7°
C06C07C08H47150.2°118.7°
C07C08N09H48119.3°119.3°
C07C08N09H47119.3°119.2°
C08C07C06C1037.2°23.4°
C07C08N09C1012.2°24.2°
C07C08N09C13168.0°155.8°
C08C07C05H4546.8°75.5°
C08C07C05H4672.8°40.9°
C08C07C06H1174.6°139.8°
C07C08H48H47121.9°121.6°
C08N09C10C0610.5°38.8°
C08N09C10C13179.8°180.0°
C08N09C13C14179.8°5.8°
C08N09C13O150.2°174.1°
N09C08C07H12145.6°111.8°
C08N09C10H49108.6°157.2°
C08N09C10H50129.6°79.5°
N09C08H48H47122.0°121.5°
C06C10N09H49119.1°118.4°
C06C10N09H50119.1°118.3°
C06C10N09C13169.3°141.2°
C10C06C07H12151.0°88.2°
C06C10H49H50122.4°123.3°
C10C06C03H4145.7°76.5°
C10C06C03H42163.9°40.7°
C10N09C13C140.1°174.1°
C10N09C13O15180.0°5.9°
N09C10C06H1181.3°154.5°
N09C10H49H50122.5°123.3°
C10N09C08H48107.1°95.0°
C10N09C08H47131.6°143.4°
N09C13C14O15180.0°180.0°
N09C13C14C1664.1°155.9°
N09C13C14C18118.5°24.1°
C13N09C10H4971.6°22.8°
C13N09C10H5050.2°100.4°
C13N09C08H4872.7°85.0°
C13N09C08H4748.6°36.6°
C13C14C16C18177.3°180.0°
C13C14C16C17178.5°180.0°
C13C14C18C19178.4°179.5°
C13C14C16H511.5°0.3°
C13C14C18H531.6°0.2°
O15C13C14C16115.9°24.1°
O15C13C14C1861.5°155.9°
C14C16C17H51180.0°179.7°
C16C14C18C190.9°0.5°
C14C16C17C200.9°0.3°
C14C16C17H52179.1°179.7°
C16C14C18H53179.1°179.7°
C17C16C14C181.2°0.0°
C16C17C20H52180.0°179.9°
C16C17C20C190.4°0.1°
C16C17C20N21179.6°180.0°
C14C18C19H53180.0°179.2°
C14C18C19C200.4°0.8°
C14C18C19N23179.6°179.9°
C18C14C16H51178.9°179.7°
C18C19C20C170.1°0.5°
C18C19C20N23180.0°179.5°
C18C19C20N21179.9°179.5°
C18C19N23N22180.0°179.5°
C17C20C19N21180.0°180.0°
C17C20N21N22179.8°180.0°
C17C20C19N23179.9°180.0°
C20C17C16H51179.1°180.0°
C17C20N21H540.2°0.1°
C19C20N21N220.2°0.1°
C20C19N23N220.0°0.0°
C19C20C17H52179.6°180.0°
C20C19C18H53179.6°180.0°
C19C20N21H54179.8°180.0°
C20N21N22H54180.0°179.9°
N21C20C19N230.1°0.0°
C20N21N22N230.2°0.1°
N21C20C17H520.4°0.0°
N21N22N23C190.2°0.1°
N23C19C18H530.3°0.7°
N23N22N21H54179.8°180.0°
N01C24O25C26179.5°180.0°
N01C24C26C27147.0°175.1°
C24N01C02H39110.1°1.7°
C24N01C02H408.4°121.6°
C24N01C04H4484.6°15.9°
C24N01C04H4335.1°133.9°
N01C24C26H5533.0°4.9°
O25C24C26C2733.5°5.0°
O25C24C26H55146.5°175.1°
C24C26C27H55180.0°180.0°
C24C26C27C28177.7°180.0°
C24C26C27H562.3°0.1°
C26C27C28H56180.0°179.9°
C26C27C28C2980.9°180.0°
C26C27C28C3399.8°0.3°
C27C28C29C33179.2°179.7°
C27C28C29C30179.8°180.0°
C27C28C33C32179.9°179.7°
C28C27C26H552.3°0.0°
C27C28C29H570.2°0.0°
C27C28C33H600.1°0.0°
C28C29C30H57180.0°180.0°
C28C29C30C310.1°0.0°
C29C28C33C320.7°0.6°
C29C28C27H5699.1°0.1°
C28C29C30H58179.8°180.0°
C29C28C33H60179.3°179.7°
C29C30C31H58180.0°180.0°
C29C30C31C320.2°0.0°
C30C29C28C330.6°0.3°
C29C30C31O34179.8°180.0°
C30C31C32O34179.6°179.9°
C30C31C32C330.1°0.3°
C30C31O34C3589.0°180.0°
C31C30C29H57179.9°180.0°
C30C31C32H59179.9°179.9°
C31C32C33C280.4°0.6°
C31C32C33H59180.0°179.7°
C32C31O34C3590.6°0.1°
C32C31C30H58179.8°179.9°
C31C32C33H60179.6°179.7°
C28C33C32H60180.0°179.7°
C33C28C27H5680.2°179.8°
C33C28C29H57179.4°179.8°
C28C33C32H59179.7°179.7°
C33C32C31O34179.7°179.7°
C31O34C35F36174.6°60.1°
C31O34C35F3765.5°180.0°
C31O34C35F3854.5°60.0°
O34C31C30H580.2°0.0°
O34C31C32H590.3°0.0°
O34C35F36F37120.7°120.0°
O34C35F36F38119.2°120.1°
O34C35F37F38119.5°120.0°
F36C35F37F38120.7°120.0°
H39C02C03H4176.2°72.6°
H39C02C03H42165.6°44.6°
H40C02C03H4142.2°167.5°
H40C02C03H4275.9°75.3°
H44C04C05H4580.3°38.6°
H44C04C05H46160.1°77.9°
H43C04C05H4539.4°79.4°
H43C04C05H4680.2°164.1°
H45C05C07H1271.4°39.3°
H46C05C07H12169.0°155.7°
H11C06C07H1239.2°28.2°
H11C06C10H49159.5°87.1°
H11C06C10H5037.8°36.2°
H11C06C03H4169.6°163.9°
H11C06C03H4248.5°78.9°
H12C07C08H4826.3°7.4°
H12C07C08H4795.0°129.0°
H51C16C17H520.9°0.0°
H55C26C27H56177.7°180.0°
H57C29C30H580.1°0.0°
H59C32C33H600.3°0.0°

250835

PDB entries from 2026-03-18

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