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SummaryGeometryRelated PDB entries

Y6M

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.53Å1.50Å
C01C10sing1.53Å1.50Å
C02C03sing1.51Å1.55Å
C03C04doub1.38Å1.41ÅAromatic
C03C08sing1.39Å1.40ÅAromatic
C04C05sing1.38Å1.40ÅAromatic
C05C06doub1.39Å1.41ÅAromatic
C06C07sing1.39Å1.39ÅAromatic
C06O12sing1.36Å1.40Å
C07C08doub1.39Å1.41ÅAromatic
C08N09sing1.40Å1.44Å
N09C10sing1.47Å1.41Å
C10O11sing1.43Å1.43Å
C01H01sing1.09Å1.10Å
C01H01Asing1.09Å1.10Å
C02H02sing1.09Å1.10Å
C02H02Asing1.09Å1.10Å
C04H04sing1.08Å1.08Å
C05H05sing1.08Å1.08Å
C07H07sing1.08Å1.08Å
N09HN09sing0.97Å1.00Å
O12HO12sing0.97Å0.95Å
C10HC10sing1.09Å1.10Å
O11HO11sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C02C01C10115.8°108.8°
C01C02C03115.5°110.5°
C02C01H01107.9°109.5°
C02C01H01A107.8°109.6°
C01C02H02107.9°109.3°
C01C02H02A107.9°109.4°
C01C10N09115.0°107.8°
C01C10O11107.9°109.8°
C10C01H01107.9°109.5°
C10C01H01A107.8°109.6°
C01C10HC10108.4°109.9°
C02C03C04119.7°118.9°
C02C03C08120.7°121.4°
C03C02H02107.9°109.2°
C03C02H02A108.0°109.3°
C04C03C08119.7°119.6°
C03C04C05119.4°120.4°
C03C04H04120.3°119.8°
C03C08C07121.1°120.1°
C03C08N09119.3°120.9°
C04C05C06120.3°120.1°
C05C04H04120.3°119.8°
C04C05H05119.9°120.0°
C05C06C07120.6°119.8°
C05C06O12119.7°120.1°
C06C05H05119.9°119.9°
C07C06O12119.7°120.1°
C06C07C08118.9°119.9°
C06C07H07120.6°120.0°
C06O12HO12109.5°114.0°
C07C08N09119.7°119.0°
C08C07H07120.5°120.0°
C08N09C10118.7°118.9°
C08N09HN09107.1°120.6°
N09C10O11106.3°109.8°
C10N09HN09107.1°120.6°
N09C10HC10109.7°109.8°
O11C10HC10109.4°109.8°
C10O11HO11109.5°114.0°
H01C01H01A109.5°109.7°
H02C02H02A109.5°109.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C02C01C10H01120.9°119.7°
C02C01C10H01A120.9°119.9°
C01C02C03H02120.9°120.3°
C01C02C03H02A120.9°120.4°
C01C02C03C04175.8°159.4°
C01C02C03C083.6°20.7°
C02C01C10N0940.2°63.3°
C02C01C10O11158.7°177.2°
C02C01H01H01A117.1°120.4°
C01C02H02H02A117.2°119.6°
C02C01C10HC1082.9°56.3°
C10C01C02C0315.9°51.4°
C01C10N09C0846.1°44.7°
C01C10N09O11119.4°119.5°
C01C10N09HC10122.4°119.7°
C01C10O11HC10117.8°120.9°
C10C01H01H01A117.1°120.3°
C10C01C02H02136.7°171.7°
C10C01C02H02A105.0°68.9°
C01C10N09HN0975.2°135.2°
C01C10O11HO11180.0°179.9°
C02C03C04C08179.4°179.9°
C02C03C04C05179.8°179.9°
C02C03C08C07179.7°179.8°
C02C03C08N090.4°0.4°
C03C02C01H01136.8°171.2°
C03C02C01H01A105.0°68.4°
C03C02H02H02A117.3°119.4°
C02C03C04H040.2°0.2°
C03C04C05H04180.0°179.9°
C03C04C05C060.1°0.0°
C04C03C08C070.3°0.2°
C04C03C08N09179.8°179.6°
C04C03C02H0263.3°39.1°
C04C03C02H02A54.9°80.2°
C03C04C05H05179.9°179.9°
C08C03C04C050.4°0.1°
C03C08C07C060.1°0.2°
C03C08C07N09179.9°179.8°
C03C08N09C1025.9°13.5°
C08C03C02H02117.3°141.0°
C08C03C02H02A124.5°99.7°
C08C03C04H04179.5°179.9°
C03C08C07H07179.9°179.9°
C03C08N09HN0995.4°166.4°
C04C05C06H05180.0°179.9°
C04C05C06C070.4°0.0°
C04C05C06O12179.8°180.0°
C05C06C07O12179.4°180.0°
C05C06C07C080.5°0.1°
C06C05C04H04179.9°180.0°
C05C06C07H07179.5°180.0°
C05C06O12HO12180.0°90.0°
C06C07C08H07180.0°179.9°
C06C07C08N09179.8°179.6°
C07C06C05H05179.6°179.9°
C07C06O12HO120.6°90.1°
O12C06C07C08179.9°179.9°
O12C06C05H050.2°0.1°
O12C06C07H070.1°0.0°
C07C08N09C10154.2°166.7°
C07C08N09HN0984.6°13.4°
C08N09C10HN09121.3°179.9°
C08N09C10O11165.4°164.2°
N09C08C07H070.2°0.3°
C08N09C10HC1076.4°74.9°
N09C10O11HC10118.3°120.8°
N09C10C01H01161.2°177.0°
N09C10C01H01A80.7°56.6°
N09C10O11HO1156.1°61.6°
O11C10C01H0180.4°57.5°
O11C10C01H01A37.8°63.0°
O11C10N09HN0944.1°15.7°
H01C01C02H02102.3°68.6°
H01C01C02H02A15.9°50.8°
H01C01C10HC1038.0°63.4°
H01AC01C02H0215.8°51.9°
H01AC01C02H02A134.1°171.2°
H01AC01C10HC10156.2°176.2°
H04C04C05H050.1°0.0°
HN09N09C10HC10162.3°105.1°
HC10C10O11HO1162.2°59.2°

222415

PDB entries from 2024-07-10

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