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SummaryGeometryRelated PDB entries

Y6G

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C08C07doub1.39Å1.42ÅAromatic
C08C09sing1.36Å1.40ÅAromatic
C07C06sing1.38Å1.40ÅAromatic
C06C05doub1.39Å1.42ÅAromatic
C09C10doub1.40Å1.39ÅAromatic
N28C27doub1.30Å1.33ÅAromatic
N28C24sing1.35Å1.31ÅAromatic
C10C05sing1.41Å1.41ÅAromatic
C10N11sing1.35Å1.37ÅAromatic
C05N04sing1.37Å1.36ÅAromatic
C27N26sing1.35Å1.31ÅAromatic
C22C21doub1.38Å1.41ÅAromatic
C22C23sing1.39Å1.38ÅAromatic
C21C20sing1.39Å1.40ÅAromatic
N11N12doub1.29Å1.30ÅAromatic
C24C23sing1.48Å1.52Å
C24C25doub1.36Å1.34ÅAromatic
N04C03sing1.47Å1.44Å
N04N12sing1.40Å1.35ÅAromatic
N26C25sing1.37Å1.31ÅAromatic
C23C29doub1.39Å1.41ÅAromatic
C03C02sing1.51Å1.51Å
C20N13sing1.40Å1.43Å
C20C30doub1.39Å1.38ÅAromatic
C02N13sing1.35Å1.42Å
C02O01doub1.21Å1.23Å
N13C14sing1.46Å1.45Å
C29C30sing1.38Å1.39ÅAromatic
C14C15sing1.51Å1.50Å
C15C19sing1.38Å1.54ÅAromatic
C15C16doub1.33Å1.40ÅAromatic
C19C18doub1.33Å1.45ÅAromatic
C16S17sing1.76Å1.62ÅAromatic
C18S17sing1.76Å1.62ÅAromatic
C03H1sing1.09Å1.10Å
C03H2sing1.09Å1.10Å
C06H3sing1.08Å1.08Å
C07H4sing1.08Å1.08Å
C08H5sing1.08Å1.08Å
C09H6sing1.08Å1.08Å
C14H7sing1.09Å1.10Å
C14H8sing1.09Å1.10Å
C16H9sing1.08Å1.08Å
C18H10sing1.08Å1.08Å
C19H11sing1.08Å1.08Å
C21H12sing1.08Å1.08Å
C22H13sing1.08Å1.08Å
C25H14sing1.08Å1.08Å
N26H15sing0.97Å1.00Å
C27H16sing1.08Å1.08Å
C29H18sing1.08Å1.08Å
C30H19sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C07C08C09119.5°120.8°
C08C07C06123.1°120.5°
C08C07H4118.5°119.8°
C07C08H5120.3°119.6°
C08C09C10117.5°119.9°
C09C08H5120.2°119.6°
C08C09H6121.2°120.0°
C07C06C05117.0°119.6°
C07C06H3121.5°120.2°
C06C07H4118.5°119.8°
C06C05C10118.9°120.0°
C06C05N04134.7°133.9°
C05C06H3121.5°120.2°
C09C10C05124.0°119.3°
C09C10N11130.6°133.1°
C10C09H6121.3°120.0°
C27N28C24105.7°109.2°
N28C27N26108.7°109.0°
N28C27H16125.7°125.5°
N28C24C23123.8°126.1°
N28C24C25110.5°107.7°
C05C10N11105.3°107.7°
C10C05N04106.4°106.1°
C10N11N12110.3°110.3°
C05N04C03128.4°126.8°
C05N04N12108.9°106.5°
C27N26C25109.8°107.5°
C27N26H15125.0°126.3°
N26C27H16125.6°125.5°
C21C22C23118.5°119.9°
C22C21C20118.3°120.1°
C22C21H12120.9°119.9°
C21C22H13120.8°120.1°
C22C23C24117.4°120.1°
C22C23C29122.9°119.9°
C23C22H13120.7°120.0°
C21C20N13118.3°120.0°
C21C20C30122.3°120.1°
C20C21H12120.8°120.0°
N11N12N04109.0°109.4°
C23C24C25125.7°126.2°
C24C23C29119.6°120.1°
C24C25N26105.2°106.7°
C24C25H14127.4°126.6°
C03N04N12122.5°126.8°
N04C03C02108.1°109.5°
N04C03H1109.8°109.5°
N04C03H2109.8°109.5°
N26C25H14127.4°126.7°
C25N26H15125.1°126.2°
C23C29C30117.7°120.0°
C23C29H18121.1°120.0°
C03C02N13118.9°120.0°
C03C02O01124.4°120.0°
C02C03H1109.8°109.5°
C02C03H2109.8°109.5°
N13C20C30119.3°119.9°
C20N13C02121.8°120.0°
C20N13C14118.5°120.0°
C20C30C29119.7°120.0°
C20C30H19120.1°120.0°
N13C02O01116.7°120.0°
C02N13C14119.4°120.0°
N13C14C15114.6°109.5°
N13C14H7108.2°109.5°
N13C14H8108.2°109.5°
C30C29H18121.1°120.0°
C29C30H19120.1°120.0°
C14C15C19128.7°122.5°
C14C15C16122.4°122.5°
C15C14H7108.2°109.4°
C15C14H8108.2°109.5°
C19C15C16108.9°114.9°
C15C19C18111.9°114.9°
C15C19H11124.1°122.5°
C15C16S17109.9°109.6°
C15C16H9125.0°125.2°
C19C18S17106.0°109.5°
C19C18H10127.0°125.2°
C18C19H11124.0°122.5°
C16S17C18103.2°91.0°
S17C16H9125.0°125.2°
S17C18H10127.0°125.2°
H1C03H2109.5°109.5°
H7C14H8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C07C08C09H5180.0°179.9°
C08C07C06H4180.0°179.9°
C08C07C06C053.3°0.0°
C07C08C09C100.2°0.1°
C08C07C06H3176.7°180.0°
C07C08C09H6179.8°179.9°
C09C08C07C062.3°0.1°
C08C09C10H6180.0°180.0°
C08C09C10C051.6°0.0°
C08C09C10N11177.4°179.9°
C09C08C07H4177.7°180.0°
C07C06C05H3180.0°179.9°
C07C06C05C101.9°0.0°
C07C06C05N04179.3°180.0°
C06C07C08H5177.7°180.0°
C06C05C10C090.5°0.0°
C06C05C10N04178.1°180.0°
C06C05C10N11177.2°180.0°
C06C05N04C030.1°0.0°
C06C05N04N12175.4°179.7°
C05C06C07H4176.6°180.0°
C09C10C05N11176.7°180.0°
C09C10C05N04177.6°180.0°
C09C10N11N12175.5°179.7°
C10C09C08H5179.8°180.0°
N28C27N26H16180.0°179.8°
C27N28C24C23179.7°179.9°
C27N28C24C252.1°0.5°
N28C27N26C250.2°0.3°
N28C27N26H15179.8°179.8°
C24N28C27N261.1°0.5°
N28C24C23C2229.4°0.4°
N28C24C23C25177.3°179.5°
N28C24C25N262.2°0.3°
N28C24C23C29154.6°179.7°
N28C24C25H14177.8°179.7°
C24N28C27H16178.9°179.8°
C05C10N11N120.9°0.3°
C10C05N04C03177.6°180.0°
C10C05N04N122.3°0.2°
C10C05C06H3178.1°180.0°
C05C10C09H6178.4°179.9°
N11C10C05N040.9°0.0°
C10N11N12N042.4°0.4°
N11C10C09H62.6°0.1°
C05N04N12N113.0°0.4°
C05N04C03N12174.7°179.7°
C05N04C03C0276.4°89.7°
C05N04C03H143.4°150.3°
C05N04C03H2163.8°30.3°
N04C05C06H30.7°0.1°
C27N26C25C241.5°0.0°
C27N26C25H15180.0°180.0°
C27N26C25H14178.5°180.0°
C21C22C23H13180.0°179.9°
C22C21C20H12180.0°180.0°
C21C22C23C24178.4°179.9°
C21C22C23C295.8°0.0°
C22C21C20N13178.3°180.0°
C22C21C20C305.4°0.2°
C23C22C21C205.0°0.0°
C22C23C24C29176.0°179.9°
C22C23C24C25153.4°180.0°
C22C23C29C306.5°0.3°
C23C22C21H12175.0°180.0°
C22C23C29H18173.5°180.0°
C21C20N13C30176.5°179.8°
C21C20N13C02102.6°172.2°
C21C20N13C1471.0°7.9°
C21C20C30C296.2°0.5°
C20C21C22H13175.0°180.0°
C21C20C30H19173.8°179.8°
N11N12N04C03178.6°179.9°
C23C24C25N26179.8°179.9°
C24C23C29C30177.7°179.7°
C24C23C22H131.6°0.1°
C23C24C25H140.2°0.1°
C24C23C29H182.3°0.1°
C24C25N26H14180.0°179.9°
C25C24C23C2922.6°0.1°
C24C25N26H15178.5°179.9°
N04C03C02H1119.8°120.0°
N04C03C02H2119.8°120.0°
N04C03C02N13161.6°175.5°
N04C03C02O0115.8°4.3°
N04C03H1H2120.6°120.0°
N12N04C03C0298.3°89.9°
N12N04C03H1141.9°30.0°
N12N04C03H221.5°150.0°
C25N26C27H16179.7°180.0°
C23C29C30C206.5°0.5°
C23C29C30H18180.0°179.7°
C29C23C22H13174.2°180.0°
C23C29C30H19173.5°179.8°
C03C02N13C201.1°173.8°
C03C02N13O01177.5°179.8°
C03C02N13C14174.6°6.1°
C02C03H1H2120.6°120.0°
C20N13C02C14173.6°180.0°
C20N13C02O01176.5°6.0°
N13C20C30C29177.5°179.7°
C20N13C14C1564.2°83.3°
C20N13C14H7175.1°36.7°
C20N13C14H856.5°156.7°
N13C20C21H121.7°0.1°
N13C20C30H192.6°0.0°
C30C20N13C0273.9°8.0°
C30C20N13C14112.5°171.9°
C20C30C29H19180.0°179.7°
C30C20C21H12174.7°179.7°
C20C30C29H18173.5°179.7°
C02N13C14C15122.0°96.7°
N13C02C03H141.8°55.6°
N13C02C03H278.7°64.4°
C02N13C14H71.3°143.3°
C02N13C14H8117.3°23.3°
O01C02N13C142.9°174.1°
O01C02C03H1135.6°124.2°
O01C02C03H2104.0°115.8°
N13C14C15H7120.8°120.0°
N13C14C15H8120.7°120.0°
N13C14C15C19115.7°93.8°
N13C14C15C1663.6°85.8°
N13C14H7H8117.7°120.0°
C14C15C19C16179.5°179.7°
C14C15C19C18178.1°179.8°
C14C15C16S17179.5°180.0°
C15C14H7H8117.7°120.0°
C14C15C16H90.5°0.1°
C14C15C19H111.9°0.0°
C15C19C18H11180.0°179.8°
C19C15C16S170.0°0.3°
C15C19C18S173.7°0.5°
C19C15C14H7123.5°26.2°
C19C15C14H85.0°146.2°
C19C15C16H9180.0°179.8°
C15C19C18H10176.3°179.8°
C16C15C19C182.5°0.5°
C15C16S17H9180.0°180.0°
C15C16S17C182.1°0.0°
C16C15C14H757.1°154.1°
C16C15C14H8175.6°34.2°
C16C15C19H11177.6°179.7°
C19C18S17C163.4°0.3°
C19C18S17H10180.0°179.7°
C16S17C18H10176.5°180.0°
C18S17C16H9177.9°180.0°
S17C18C19H11176.3°179.7°
H3C06C07H43.4°0.1°
H4C07C08H52.3°0.1°
H5C08C09H60.2°0.0°
H10C18C19H113.7°0.0°
H12C21C22H134.9°0.1°
H14C25N26H151.5°0.0°
H15N26C27H160.3°0.0°
H18C29C30H196.5°0.0°

247536

PDB entries from 2026-01-14

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