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SummaryGeometryRelated PDB entries

Y6D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C07C08doub1.39Å1.42ÅAromatic
C07C06sing1.38Å1.39ÅAromatic
C08C09sing1.36Å1.42ÅAromatic
C26C25doub1.38Å1.40ÅAromatic
C26C27sing1.38Å1.37ÅAromatic
C06C05doub1.39Å1.40ÅAromatic
C09C10doub1.40Å1.39ÅAromatic
C25C24sing1.40Å1.41ÅAromatic
C27N28doub1.32Å1.32ÅAromatic
C05C10sing1.41Å1.41ÅAromatic
C05N04sing1.37Å1.36ÅAromatic
C10N11sing1.35Å1.37ÅAromatic
C24C23sing1.48Å1.56Å
C24C29doub1.39Å1.38ÅAromatic
C22C23doub1.39Å1.39ÅAromatic
C22C21sing1.38Å1.40ÅAromatic
N28C29sing1.32Å1.32ÅAromatic
N04C03sing1.47Å1.45Å
N04N12sing1.40Å1.35ÅAromatic
N11N12doub1.29Å1.29ÅAromatic
C23C30sing1.39Å1.40ÅAromatic
C21C20doub1.39Å1.40ÅAromatic
C03C02sing1.51Å1.55Å
C30C31doub1.38Å1.39ÅAromatic
C20C31sing1.39Å1.40ÅAromatic
C20N13sing1.40Å1.47Å
C02O01doub1.21Å1.21Å
C02N13sing1.35Å1.44Å
N13C14sing1.46Å1.47Å
C14C15sing1.51Å1.54Å
C15C16doub1.33Å1.48ÅAromatic
C15C19sing1.38Å1.49ÅAromatic
C16S17sing1.76Å1.68ÅAromatic
C19C18doub1.33Å1.43ÅAromatic
S17C18sing1.76Å1.63ÅAromatic
C14H1sing1.09Å1.10Å
C14H2sing1.09Å1.10Å
C21H3sing1.08Å1.08Å
C22H4sing1.08Å1.08Å
C30H5sing1.08Å1.08Å
C31H6sing1.08Å1.08Å
C03H7sing1.09Å1.10Å
C03H8sing1.09Å1.10Å
C06H9sing1.08Å1.08Å
C07H10sing1.08Å1.08Å
C08H11sing1.08Å1.08Å
C09H12sing1.08Å1.08Å
C16H13sing1.08Å1.08Å
C18H14sing1.08Å1.08Å
C19H15sing1.08Å1.08Å
C25H16sing1.08Å1.08Å
C26H17sing1.08Å1.08Å
C27H18sing1.08Å1.08Å
C29H19sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C08C07C06122.0°120.4°
C07C08C09119.7°120.8°
C08C07H10119.0°119.8°
C07C08H11120.2°119.6°
C07C06C05117.3°119.7°
C07C06H9121.4°120.1°
C06C07H10119.0°119.8°
C08C09C10118.5°119.9°
C09C08H11120.2°119.6°
C08C09H12120.7°120.1°
C25C26C27117.8°119.2°
C26C25C24118.0°118.3°
C26C25H16121.0°120.8°
C25C26H17121.1°120.4°
C26C27N28123.0°121.1°
C27C26H17121.1°120.4°
C26C27H18118.5°119.5°
C06C05C10121.8°119.9°
C06C05N04132.9°133.9°
C05C06H9121.3°120.2°
C09C10C05120.6°119.3°
C09C10N11132.1°133.0°
C10C09H12120.7°120.1°
C25C24C23119.4°120.6°
C25C24C29119.8°118.9°
C24C25H16121.0°120.8°
C27N28C29121.1°121.8°
N28C27H18118.5°119.4°
C10C05N04105.2°106.1°
C05C10N11107.2°107.6°
C05N04C03125.9°126.8°
C05N04N12108.5°106.5°
C10N11N12108.5°110.3°
C23C24C29120.6°120.5°
C24C23C22119.2°120.1°
C24C23C30118.6°120.0°
C24C29N28120.2°120.6°
C24C29H19119.9°119.7°
C23C22C21118.5°119.9°
C22C23C30122.2°119.9°
C23C22H4120.8°120.1°
C22C21C20119.4°120.1°
C22C21H3120.3°119.9°
C21C22H4120.7°120.0°
N28C29H19119.9°119.7°
C03N04N12125.6°126.7°
N04C03C02107.2°109.5°
N04C03H7110.1°109.5°
N04C03H8110.1°109.4°
N04N12N11110.5°109.4°
C23C30C31119.6°120.0°
C23C30H5120.2°120.0°
C21C20C31121.7°120.1°
C21C20N13115.2°119.9°
C20C21H3120.3°120.0°
C03C02O01123.2°120.0°
C03C02N13120.4°120.0°
C02C03H7110.0°109.5°
C02C03H8110.1°109.5°
C30C31C20118.6°120.0°
C31C30H5120.2°120.0°
C30C31H6120.7°120.0°
C31C20N13123.1°120.0°
C20C31H6120.7°120.0°
C20N13C02118.7°120.0°
C20N13C14116.7°120.0°
O01C02N13116.4°120.0°
C02N13C14124.5°120.0°
N13C14C15105.6°109.5°
N13C14H1110.4°109.5°
N13C14H2110.4°109.5°
C14C15C16130.3°122.6°
C14C15C19123.6°122.5°
C15C14H1110.4°109.5°
C15C14H2110.4°109.5°
C16C15C19106.0°114.9°
C15C16S17114.3°109.6°
C15C16H13122.8°125.2°
C15C19C18111.0°114.9°
C15C19H15124.5°122.5°
C16S17C1893.6°91.0°
S17C16H13122.9°125.2°
C19C18S17115.1°109.6°
C19C18H14122.5°125.3°
C18C19H15124.5°122.5°
S17C18H14122.5°125.2°
H1C14H2109.4°109.4°
H7C03H8109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C08C07C06H10180.0°179.8°
C07C08C09H11180.0°179.8°
C08C07C06C054.6°0.1°
C07C08C09C100.8°0.4°
C08C07C06H9175.4°180.0°
C07C08C09H12179.2°180.0°
C06C07C08C092.9°0.2°
C07C06C05H9180.0°180.0°
C07C06C05C102.7°0.1°
C07C06C05N04179.9°179.9°
C06C07C08H11177.1°180.0°
C08C09C10H12180.0°179.6°
C08C09C10C052.6°0.4°
C08C09C10N11177.8°179.9°
C09C08C07H10177.1°180.0°
C25C26C27H17180.0°179.9°
C26C25C24H16180.0°179.9°
C25C26C27N281.8°0.1°
C26C25C24C23178.9°180.0°
C26C25C24C292.7°0.3°
C25C26C27H18178.2°180.0°
C27C26C25C242.5°0.1°
C26C27N28H18180.0°179.9°
C26C27N28C291.1°0.3°
C27C26C25H16177.5°180.0°
C06C05C10C090.8°0.1°
C06C05C10N04178.0°179.9°
C06C05C10N11177.1°179.9°
C06C05N04C031.8°0.2°
C06C05N04N12177.8°179.9°
C05C06C07H10175.4°179.7°
C09C10C05N11176.3°179.8°
C09C10C05N04177.2°179.7°
C09C10N11N12177.4°179.7°
C10C09C08H11179.2°179.8°
C25C24C23C29176.1°179.7°
C25C24C23C2233.5°179.7°
C25C24C29N282.0°0.5°
C25C24C23C30146.8°0.3°
C24C25C26H17177.4°180.0°
C25C24C29H19178.0°179.7°
C27N28C29C241.2°0.6°
N28C27C26H17178.2°180.0°
C27N28C29H19178.8°179.7°
C10C05N04C03179.4°180.0°
C10C05N04N120.2°0.1°
C05C10N11N121.7°0.0°
C10C05C06H9177.3°179.9°
C05C10C09H12177.4°180.0°
N04C05C10N110.9°0.1°
C05N04C03N12179.5°179.9°
C05N04N12N111.3°0.1°
C05N04C03C0293.6°89.9°
C05N04C03H726.0°150.0°
C05N04C03H8146.7°30.1°
N04C05C06H90.1°0.1°
C10N11N12N041.8°0.0°
N11C10C09H122.2°0.3°
C24C23C22C30179.6°180.0°
C24C23C22C21178.8°180.0°
C23C24C29N28178.2°179.7°
C24C23C30C31179.2°179.7°
C24C23C22H41.2°0.0°
C24C23C30H50.8°0.2°
C23C24C25H161.1°0.1°
C23C24C29H191.8°0.0°
C29C24C23C22150.3°0.0°
C24C29N28H19180.0°179.8°
C29C24C23C3029.3°180.0°
C29C24C25H16177.3°179.8°
C23C22C21H4180.0°180.0°
C23C22C21C202.6°0.1°
C22C23C30C310.4°0.3°
C23C22C21H3177.4°179.7°
C22C23C30H5179.6°179.8°
C21C22C23C301.6°0.0°
C22C21C20H3180.0°179.8°
C22C21C20C311.6°0.2°
C22C21C20N13177.8°179.7°
C29N28C27H18178.9°179.7°
C03N04N12N11178.4°179.9°
N04C03C02H7119.6°120.0°
N04C03C02H8119.7°119.9°
N04C03C02O012.6°6.4°
N04C03C02N13175.7°173.7°
N04C03H7H8121.1°119.9°
N12N04C03C0285.9°90.0°
N12N04C03H7154.5°30.1°
N12N04C03H833.8°150.1°
C23C30C31H5180.0°179.4°
C23C30C31C201.4°0.6°
C30C23C22H4178.4°180.0°
C23C30C31H6178.6°179.4°
C21C20C31C300.4°0.5°
C21C20C31N13179.4°179.9°
C21C20N13C02104.3°7.6°
C21C20N13C1472.3°172.4°
C20C21C22H4177.4°180.0°
C21C20C31H6179.6°179.5°
C03C02N13C203.1°173.7°
C03C02O01N13178.4°180.0°
C03C02N13C14179.5°6.3°
C02C03H7H8121.1°120.0°
C30C31C20H6180.0°180.0°
C30C31C20N13179.8°179.4°
C31C20N13C0276.3°172.5°
C31C20N13C14107.1°7.5°
C31C20C21H3178.4°180.0°
C20C31C30H5178.6°180.0°
C20N13C02O01175.3°6.4°
C20N13C02C14176.3°180.0°
C20N13C14C1585.5°92.5°
C20N13C14H1155.1°27.5°
C20N13C14H233.9°147.4°
N13C20C21H32.2°0.1°
N13C20C31H60.2°0.6°
O01C02N13C141.0°173.6°
O01C02C03H7122.3°113.6°
O01C02C03H8117.0°126.3°
C02N13C14C1598.1°87.4°
C02N13C14H121.3°152.5°
C02N13C14H2142.4°32.6°
N13C02C03H756.1°66.3°
N13C02C03H864.6°53.7°
N13C14C15H1119.4°120.0°
N13C14C15H2119.4°120.0°
N13C14C15C164.4°84.3°
N13C14C15C19179.5°96.0°
N13C14H1H2121.8°120.0°
C14C15C16C19175.7°179.7°
C14C15C16S17176.9°180.0°
C14C15C19C18177.4°179.8°
C15C14H1H2121.8°120.0°
C14C15C16H133.1°0.0°
C14C15C19H152.6°0.0°
C15C16S17H13180.0°179.9°
C16C15C19C181.3°0.5°
C15C16S17C180.6°0.0°
C16C15C14H1115.0°35.7°
C16C15C14H2123.8°155.7°
C16C15C19H15178.7°179.7°
C19C15C16S171.2°0.3°
C15C19C18H15180.0°179.8°
C15C19C18S171.0°0.4°
C19C15C14H160.1°144.0°
C19C15C14H261.1°24.1°
C19C15C16H13178.8°179.8°
C15C19C18H14179.0°179.8°
C16S17C18C190.2°0.2°
C16S17C18H14179.8°180.0°
C19C18S17H14180.0°179.8°
C18S17C16H13179.4°180.0°
S17C18C19H15179.0°179.8°
H3C21C22H42.6°0.3°
H5C30C31H61.4°0.0°
H9C06C07H104.6°0.2°
H10C07C08H112.9°0.2°
H11C08C09H120.8°0.2°
H14C18C19H151.0°0.0°
H16C25C26H172.6°0.1°
H17C26C27H181.8°0.1°

251174

PDB entries from 2026-03-25

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