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Y5S

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O01C02doub1.21Å1.23Å
C02N03sing1.34Å1.40Å
C02C06sing1.51Å1.52Å
N03C04sing1.47Å1.46Å
C21O20sing1.45Å1.45Å
C21C22sing1.54Å1.61Å
O31C19doub1.22Å1.22Å
C23C22sing1.53Å1.55Å
C23C24sing1.53Å1.56Å
C06C07sing1.53Å1.56Å
C06C05sing1.55Å1.53Å
O20C19sing1.35Å1.40Å
C19N18sing1.35Å1.40Å
C04C05sing1.54Å1.57Å
C22C27sing1.52Å1.55Å
C24C30sing1.52Å1.55Å
C24C25sing1.53Å1.53Å
C16C15sing1.53Å1.54Å
C30C29sing1.53Å1.56Å
C07C08sing1.53Å1.54Å
N18C13sing1.47Å1.47Å
N11C08sing1.47Å1.45Å
N11C12sing1.35Å1.37Å
C13C12sing1.51Å1.56Å
C13C14sing1.53Å1.57Å
C29C28sing1.53Å1.56Å
C27C26sing1.53Å1.56Å
C15C14sing1.53Å1.56Å
C15C17sing1.53Å1.55Å
C08C09sing1.53Å1.53Å
C25C26sing1.53Å1.53Å
C12O32doub1.21Å1.24Å
C09O10sing1.43Å1.41Å
C26C28sing1.53Å1.55Å
C17H1sing1.09Å1.10Å
C17H2sing1.09Å1.10Å
C17H3sing1.09Å1.10Å
C13H4sing1.09Å1.10Å
C14H5sing1.09Å1.10Å
C14H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C21H8sing1.09Å1.10Å
C21H9sing1.09Å1.10Å
C23H10sing1.09Å1.10Å
C23H11sing1.09Å1.10Å
C24H12sing1.11Å1.10Å
C26H13sing1.09Å1.10Å
C16H14sing1.09Å1.10Å
C16H15sing1.09Å1.10Å
C16H16sing1.09Å1.10Å
C09H17sing1.09Å1.10Å
C09S1sing1.81Å1.07Å
C08H19sing1.09Å1.10Å
C06H20sing1.09Å1.10Å
C04H21sing1.09Å1.10Å
C04H22sing1.09Å1.10Å
C07H23sing1.09Å1.10Å
C07H24sing1.09Å1.10Å
C05H25sing1.09Å1.10Å
C05H26sing1.09Å1.10Å
C22H27sing1.10Å1.10Å
C25H28sing1.09Å1.10Å
C25H29sing1.09Å1.10Å
C27H30sing1.09Å1.10Å
C27H31sing1.10Å1.10Å
C28H32sing1.09Å1.10Å
C28H33sing1.09Å1.10Å
C29H34sing1.09Å1.10Å
C29H35sing1.09Å1.10Å
C30H36sing1.10Å1.10Å
C30H37sing1.10Å1.10Å
N03H38sing0.97Å1.00Å
N11H39sing0.97Å1.00Å
N18H40sing0.97Å1.00Å
O10H41sing0.97Å0.95Å
S1O1doub1.42Å34.08Å
S1O2doub1.42Å34.08Å
S1O3sing1.52Å34.08Å
O3H18sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O01C02N03121.6°125.0°
O01C02C06124.9°124.9°
N03C02C06113.5°110.1°
C02N03C04109.6°111.3°
C02N03H38125.2°124.3°
C02C06C07114.8°110.5°
C02C06C05100.8°104.2°
C02C06H20110.7°110.6°
N03C04C05104.0°105.5°
N03C04H21110.8°110.2°
N03C04H22110.8°110.3°
C04N03H38125.2°124.3°
O20C21C22117.5°109.5°
C21O20C19119.9°117.0°
O20C21H8107.4°109.5°
O20C21H9107.4°109.4°
C21C22C23111.7°109.0°
C21C22C27110.8°109.2°
C22C21H8107.4°109.5°
C22C21H9107.4°109.5°
C21C22H27107.5°107.9°
O31C19O20119.1°120.0°
O31C19N18120.5°120.0°
C22C23C24114.4°111.1°
C23C22C27110.3°112.9°
C22C23H10108.2°109.3°
C22C23H11108.2°109.3°
C23C22H27108.2°108.7°
C23C24C30111.9°112.2°
C23C24C25111.5°109.5°
C24C23H10108.2°109.4°
C24C23H11108.2°109.4°
C23C24H12108.1°107.5°
C07C06C05109.6°110.5°
C06C07C08113.1°109.5°
C07C06H20110.1°110.5°
C06C07H23108.6°109.5°
C06C07H24108.6°109.5°
C06C05C04107.3°101.8°
C05C06H20110.6°110.5°
C06C05H25110.0°111.0°
C06C05H26110.0°111.0°
O20C19N18120.4°120.0°
C19N18C13122.9°120.0°
C19N18H40118.6°120.0°
C05C04H21110.8°110.3°
C05C04H22110.8°110.3°
C04C05H25110.0°111.0°
C04C05H26110.0°111.0°
C22C27C26114.0°111.6°
C27C22H27108.1°109.0°
C22C27H30108.3°110.2°
C22C27H31108.3°108.8°
C30C24C25108.8°112.0°
C24C30C29114.6°112.4°
C30C24H12108.2°107.9°
C24C30H36108.2°109.5°
C24C30H37108.2°109.4°
C24C25C26110.0°108.1°
C25C24H12108.3°107.4°
C24C25H28109.3°109.6°
C24C25H29109.3°110.1°
C16C15C14112.2°109.5°
C16C15C17110.7°109.5°
C16C15H7107.2°109.5°
C15C16H14109.5°109.5°
C15C16H15109.5°109.5°
C15C16H16109.5°109.5°
C30C29C28116.5°110.3°
C30C29H34107.7°109.1°
C30C29H35107.7°110.0°
C29C30H36108.2°109.0°
C29C30H37108.2°108.9°
C07C08N11112.0°109.4°
C07C08C09109.5°109.5°
C07C08H19107.2°109.5°
C08C07H23108.5°109.5°
C08C07H24108.6°109.5°
N18C13C12111.1°109.4°
N18C13C14110.6°109.5°
N18C13H4109.2°109.4°
C13N18H40118.5°120.0°
C08N11C12123.9°120.0°
N11C08C09112.5°109.5°
N11C08H19108.3°109.5°
C08N11H39118.0°120.1°
N11C12C13122.6°120.0°
N11C12O32119.0°120.0°
C12N11H39118.1°119.9°
C12C13C14109.8°109.5°
C13C12O32118.4°120.0°
C12C13H4108.1°109.5°
C13C14C15113.9°109.5°
C14C13H4107.9°109.5°
C13C14H5108.4°109.5°
C13C14H6108.4°109.5°
C29C28C26115.3°108.9°
C29C28H32108.0°109.7°
C29C28H33108.0°109.7°
C28C29H34107.7°108.8°
C28C29H35107.7°110.3°
C27C26C25111.9°110.2°
C27C26C28112.0°108.7°
C27C26H13108.0°110.1°
C26C27H30108.3°110.1°
C26C27H31108.3°108.4°
C14C15C17112.2°109.5°
C15C14H5108.3°109.5°
C15C14H6108.4°109.5°
C14C15H7107.1°109.5°
C15C17H1109.5°109.5°
C15C17H2109.5°109.5°
C15C17H3109.5°109.5°
C17C15H7107.1°109.4°
C08C09O10109.2°109.5°
C08C09H17106.6°109.5°
C08C09S1109.4°109.5°
C09C08H19107.2°109.5°
C25C26C28108.2°108.5°
C25C26H13108.4°109.8°
C26C25H28109.3°109.5°
C26C25H29109.4°109.8°
O10C09H17108.0°109.4°
O10C09S1109.4°109.5°
C09O10H41109.5°114.0°
C28C26H13108.2°109.6°
C26C28H32108.0°109.4°
C26C28H33108.0°109.4°
H1C17H2109.4°109.5°
H1C17H3109.5°109.4°
H2C17H3109.5°109.5°
H5C14H6109.5°109.4°
H8C21H9109.5°109.5°
H10C23H11109.5°108.4°
H14C16H15109.4°109.5°
H14C16H16109.5°109.4°
H15C16H16109.5°109.5°
H17C09S1114.1°109.4°
C09S1O1138.7°110.5°
C09S1O2138.7°110.5°
C09S1O3138.7°104.4°
H21C04H22109.5°110.3°
H23C07H24109.5°109.5°
H25C05H26109.5°110.9°
H28C25H29109.5°109.7°
H30C27H31109.5°107.5°
H32C28H33109.5°109.7°
H34C29H35109.5°108.4°
H36C30H37109.5°107.7°
O1S1O20.0°121.1°
O1S1O30.0°104.3°
O2S1O30.0°104.3°
S1O3H1890.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O01C02N03C06179.6°180.0°
O01C02N03C04180.0°179.6°
O01C02C06C0748.9°45.1°
O01C02C06C05166.5°163.8°
O01C02C06H2076.4°77.5°
O01C02N03H380.0°0.4°
C02N03C04H38180.0°180.0°
N03C02C06C07130.6°134.9°
N03C02C06C0513.0°16.3°
C02N03C04C0513.5°17.0°
N03C02C06H20104.0°102.4°
C02N03C04H21105.6°136.0°
C02N03C04H22132.6°102.0°
C06C02N03C040.5°0.4°
C02C06C07C05112.5°114.8°
C02C06C07H20125.7°122.7°
C02C06C05H20117.1°118.8°
C02C06C05C0420.5°24.8°
C02C06C07C08177.2°179.6°
C02C06C07H2362.3°60.4°
C02C06C07H2456.6°59.6°
C02C06C05H2599.2°93.3°
C02C06C05H26140.1°142.9°
C06C02N03H38179.5°179.6°
N03C04C05C0621.7°25.4°
N03C04C05H21119.1°119.0°
N03C04C05H22119.1°119.0°
N03C04H21H22122.5°122.0°
N03C04C05H2598.0°92.7°
N03C04C05H26141.4°143.5°
O20C21C22H8121.2°120.0°
O20C21C22H9121.2°120.0°
C21O20C19O3116.9°0.1°
O20C21C22C23175.9°175.0°
C21O20C19N18162.2°180.0°
O20C21C22C2752.4°61.3°
O20C21H8H9116.4°120.0°
O20C21C22H2765.5°57.1°
C21C22C23C27123.7°121.5°
C21C22C23H27118.2°117.4°
C21C22C23C24171.6°165.7°
C22C21O20C1981.2°180.0°
C21C22C27H27117.6°117.7°
C21C22C27C26171.8°177.4°
C22C21H8H9116.3°120.0°
C21C22C23H1050.9°73.5°
C21C22C23H1167.6°45.0°
C21C22C27H3067.5°54.8°
C21C22C27H3151.1°62.9°
O31C19O20N18179.1°179.9°
O31C19N18C137.3°5.1°
O31C19N18H40172.7°174.9°
C22C23C24H10120.7°120.7°
C22C23C24H11120.7°120.7°
C23C22C27H27118.1°120.9°
C22C23C24C30118.5°108.8°
C22C23C24C253.5°16.3°
C23C22C27C2647.5°56.1°
C23C22C21H854.8°55.0°
C23C22C21H962.9°65.0°
C22C23H10H11117.8°119.0°
C22C23C24H12122.5°132.7°
C23C22C27H30168.2°66.6°
C23C22C27H3173.1°175.7°
C24C23C22C2747.9°44.2°
C23C24C30C25123.6°123.7°
C23C24C30H12118.9°118.3°
C23C24C25H12118.8°116.5°
C23C24C30C2975.4°70.9°
C23C24C25C2656.9°67.8°
C24C23H10H11117.7°119.2°
C24C23C22H2770.2°76.9°
C23C24C25H28177.0°172.9°
C23C24C25H2963.2°52.1°
C23C24C30H3645.3°50.4°
C23C24C30H37163.8°168.1°
C07C06C05H20121.5°122.5°
C07C06C05C04141.8°143.5°
C06C07C08H23120.6°120.0°
C06C07C08H24120.6°120.0°
C06C07C08N1156.9°61.4°
C06C07C08C09177.6°178.7°
C06C07C08H1961.7°58.6°
C06C07H23H24118.4°120.0°
C07C06C05H2522.2°25.4°
C07C06C05H2698.5°98.4°
C06C05C04H25119.7°118.1°
C06C05C04H26119.7°118.1°
C05C06C07C0870.3°64.8°
C06C05C04H2197.5°144.4°
C06C05C04H22140.8°93.6°
C05C06C07H2350.2°175.2°
C05C06C07H24169.1°55.2°
C06C05H25H26121.0°123.8°
O20C19N18C13171.8°175.0°
C19O20C21H8157.7°60.0°
C19O20C21H940.0°60.0°
O20C19N18H408.2°5.0°
C19N18C13H40180.0°180.0°
C19N18C13C1260.0°151.6°
C19N18C13C14177.8°88.4°
C19N18C13H459.2°31.6°
C04C05C06H2096.6°94.0°
C05C04H21H22122.5°122.0°
C04C05H25H26121.0°123.9°
C05C04N03H38166.5°163.0°
C22C27C26H30120.6°122.7°
C22C27C26H31120.6°119.9°
C22C27C26C254.1°4.3°
C22C27C26C28117.6°123.1°
C27C22C21H868.7°178.7°
C27C22C21H9173.6°58.7°
C27C22C23H1072.8°165.0°
C27C22C23H11168.6°76.6°
C22C27C26H13123.3°116.9°
C22C27H30H31117.9°118.5°
C30C24C25H12117.4°118.4°
C24C30C29H36120.7°121.5°
C24C30C29H37120.8°121.3°
C24C30C29C2832.1°52.8°
C30C24C25C2666.9°57.4°
C30C24C23H102.2°130.6°
C30C24C23H11120.7°12.0°
C30C24C25H2853.1°61.9°
C30C24C25H29173.0°177.3°
C24C30C29H3488.9°172.3°
C24C30C29H35153.1°69.0°
C24C30H36H37117.7°118.8°
C25C24C30C2948.2°52.9°
C24C25C26C2757.3°55.8°
C24C25C26H28120.1°119.3°
C24C25C26H29120.1°120.1°
C24C25C26C2866.5°63.1°
C25C24C23H10124.3°104.4°
C25C24C23H11117.2°137.0°
C24C25C26H13176.4°177.2°
C24C25H28H29119.7°121.0°
C25C24C30H36168.9°174.1°
C25C24C30H3772.6°68.1°
C16C15C14C1350.5°66.0°
C16C15C14C17125.3°120.0°
C16C15C14H7117.4°120.0°
C16C15C17H7116.6°120.0°
C16C15C17H1180.0°180.0°
C16C15C17H260.0°60.0°
C16C15C17H360.0°60.0°
C16C15C14H5171.1°54.0°
C16C15C14H670.2°173.9°
C15C16H14H15120.0°120.0°
C15C16H14H16120.0°120.0°
C15C16H15H16120.0°120.0°
C30C29C28H34121.0°119.6°
C30C29C28H35121.0°121.7°
C30C29C28C2632.3°58.5°
C29C30C24H12165.7°170.9°
C30C29C28H32153.2°61.1°
C30C29C28H3388.5°178.3°
C30C29H34H35116.8°119.7°
C29C30H36H37117.7°118.0°
C07C08N11C09123.8°120.0°
C07C08N11H19117.9°120.0°
C07C08N11C12131.8°150.7°
C07C08C09H19115.9°120.0°
C07C08C09O1055.3°174.8°
C07C08C09H17171.8°54.8°
C07C08C09S164.4°65.2°
C08C07C06H2051.5°57.7°
C08C07H23H24118.3°120.0°
C07C08N11H3948.2°29.3°
N18C13C12N11119.5°160.4°
N18C13C12C14122.7°120.0°
N18C13C12H4119.8°119.9°
N18C13C14H4119.4°120.0°
N18C13C14C1565.3°172.7°
N18C13C12O3258.7°19.7°
N18C13C14H555.3°52.7°
N18C13C14H6174.0°67.2°
C08N11C12H39180.0°180.0°
C08N11C12C13179.0°174.8°
N11C08C09H19118.9°120.0°
C08N11C12O320.8°5.2°
N11C08C09O10179.6°54.9°
N11C08C09H1763.1°65.1°
N11C08C09S160.8°174.9°
N11C08C07H23177.5°58.6°
N11C08C07H2463.7°178.6°
N11C12C13O32178.2°180.0°
N11C12C13C14117.8°79.7°
C12N11C08C09104.4°89.3°
N11C12C13H40.3°40.4°
C12N11C08H1913.9°30.7°
C12C13C14H4117.6°120.1°
C12C13C14C15171.6°67.3°
C12C13C14H567.7°172.7°
C12C13C14H651.0°52.7°
C13C12N11H391.0°5.2°
C12C13N18H40120.0°28.3°
C13C14C15H5120.7°120.0°
C13C14C15H6120.7°120.0°
C13C14C15C17175.8°173.9°
C14C13C12O3264.0°100.3°
C13C14H5H6118.0°120.0°
C13C14C15H766.9°54.0°
C14C13N18H402.2°91.7°
C29C28C26C2775.7°55.3°
C29C28C26C2548.1°64.5°
C29C28C26H32120.9°119.8°
C29C28C26H33120.8°119.9°
C29C28C26H13165.4°175.6°
C29C28H32H33117.3°120.6°
C28C29H34H35116.8°119.9°
C28C29C30H36152.9°174.3°
C28C29C30H3788.6°68.4°
C27C26C25C28123.9°118.9°
C27C26C25H13119.0°121.4°
C27C26C28H13118.9°120.3°
C26C27C22H2770.6°64.9°
C27C26C25H28177.4°175.1°
C27C26C25H2962.7°64.3°
C26C27H30H31118.0°117.9°
C27C26C28H3245.2°175.1°
C27C26C28H33163.5°64.7°
C14C15C17H7117.3°120.0°
C14C15C17H153.8°59.9°
C14C15C17H266.1°180.0°
C14C15C17H3173.9°60.0°
C15C14C13H454.1°52.8°
C15C14H5H6118.0°120.0°
C14C15C16H14180.0°63.5°
C14C15C16H1560.0°176.4°
C14C15C16H1660.0°56.4°
C15C17H1H2120.0°120.0°
C15C17H1H3120.0°120.0°
C15C17H2H3120.0°120.0°
C17C15C14H563.5°66.0°
C17C15C14H655.2°53.9°
C17C15C16H1453.8°56.5°
C17C15C16H1566.2°63.5°
C17C15C16H16173.8°176.5°
C08C09O10H17115.6°120.1°
C08C09O10S1119.7°120.0°
C08C09H17S1120.9°120.0°
C09C08C07H2357.1°61.3°
C09C08C07H2461.8°58.7°
C09C08N11H3975.6°90.6°
C08C09O10H41180.0°60.0°
C08C09S1O173.7°177.8°
C08C09S1O273.7°45.5°
C08C09S1O373.7°66.2°
C25C26C28H13117.2°119.9°
C26C25C24H12175.7°175.7°
C26C25H28H29119.8°120.6°
C25C26C27H30116.6°118.4°
C25C26C27H31124.7°124.2°
C25C26C28H32169.0°55.3°
C25C26C28H3372.7°175.5°
O32C12C13H4178.5°139.6°
O32C12N11H39179.2°174.8°
O10C09H17S1121.9°120.0°
O10C09C08H1960.7°65.1°
O10C09S1O145.9°62.2°
O10C09S1O245.9°74.6°
O10C09S1O345.9°173.8°
C28C26C25H2853.6°56.3°
C28C26C25H29173.4°176.8°
C28C26C27H30121.7°0.4°
C28C26C27H313.0°117.0°
C26C28H32H33117.3°120.0°
C26C28C29H3488.7°178.1°
C26C28C29H35153.4°63.1°
H1C17H2H3120.0°120.0°
H1C17C15H763.4°60.0°
H2C17C15H7176.6°60.0°
H3C17C15H756.6°180.0°
H4C13C14H5174.7°67.2°
H4C13C14H666.6°172.8°
H4C13N18H40120.8°148.3°
H5C14C15H753.8°174.0°
H6C14C15H7172.4°66.0°
H7C15C16H1462.7°176.5°
H7C15C16H15177.3°56.4°
H7C15C16H1657.3°63.6°
H8C21C22H27173.3°62.9°
H9C21C22H2755.6°177.1°
H10C23C24H12116.8°12.0°
H10C23C22H27169.1°43.9°
H11C23C24H121.8°106.6°
H11C23C22H2750.5°162.3°
H12C24C25H2864.3°56.4°
H12C24C25H2955.6°64.3°
H12C24C30H3673.6°67.9°
H12C24C30H3744.9°49.9°
H13C26C25H2863.6°63.5°
H13C26C25H2956.3°57.1°
H13C26C27H302.7°120.4°
H13C26C27H31116.0°3.0°
H13C26C28H3273.8°64.6°
H13C26C28H3344.5°55.7°
H14C16H15H16120.0°120.0°
H17C09C08H1955.8°174.8°
H17C09O10H4164.4°60.1°
H17C09S1O1167.0°57.8°
H17C09S1O2167.0°165.5°
H17C09S1O3167.0°53.9°
S1C09C08H19179.7°54.9°
S1C09O10H4160.4°180.0°
C09S1O1O290.0°131.5°
C09S1O1O390.0°111.7°
C09S1O2O390.0°111.7°
C09S1O3H1890.0°180.0°
H19C08C07H2358.9°178.6°
H19C08C07H24177.8°61.4°
H19C08N11H39166.1°149.3°
H20C06C07H23172.0°62.3°
H20C06C07H2469.1°177.7°
H20C06C05H25143.7°147.9°
H20C06C05H2623.0°24.1°
H21C04C05H25142.9°26.3°
H21C04C05H2622.2°97.5°
H21C04N03H3874.4°44.0°
H22C04C05H2521.1°148.3°
H22C04C05H2699.5°24.5°
H22C04N03H3847.4°78.0°
H27C22C27H3050.1°172.5°
H27C22C27H31168.7°54.8°
H32C28C29H3432.2°58.5°
H32C28C29H3585.8°177.2°
H33C28C29H34150.5°62.1°
H33C28C29H3532.5°56.6°
H34C29C30H3631.9°66.2°
H34C29C30H37150.4°51.0°
H35C29C30H3686.1°52.5°
H35C29C30H3732.4°169.7°
O1S1O2O390.0°116.8°
O1S1O3H1890.0°63.9°
O2S1O3H1890.0°64.0°

222415

PDB entries from 2024-07-10

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