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Y5D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O41S02doub1.42Å1.44Å
O01S02doub1.42Å1.44Å
C39S02sing1.81Å1.81Å
C39C40sing1.53Å1.53Å
S02N03sing1.66Å1.67Å
N03C38sing1.48Å1.47Å
N03C04sing1.48Å1.47Å
C38C05sing1.54Å1.46Å
C04C05sing1.54Å1.48Å
C31C30sing1.53Å1.54Å
C31C25sing1.53Å1.44Å
C30N28sing1.47Å1.44Å
N37C36doub1.31Å1.34ÅAromatic
N37N09sing1.40Å1.37ÅAromatic
C36C11sing1.41Å1.39ÅAromatic
N09C05sing1.47Å1.44Å
N09C10sing1.35Å1.34ÅAromatic
F33C32sing1.35Å1.37Å
C05C06sing1.53Å1.53Å
C11C10doub1.37Å1.38ÅAromatic
C11C12sing1.48Å1.53Å
C12N35doub1.33Å1.32ÅAromatic
C12C13sing1.40Å1.41ÅAromatic
C32C34doub1.38Å1.38ÅAromatic
C32C24sing1.39Å1.39ÅAromatic
C14C13sing1.46Å1.42ÅAromatic
C14C15doub1.34Å1.40ÅAromatic
C34C21sing1.39Å1.38ÅAromatic
C25C24sing1.51Å1.55Å
C25C26sing1.53Å1.45Å
N35C19sing1.33Å1.32ÅAromatic
C13C17doub1.41Å1.40ÅAromatic
C24C23doub1.38Å1.40ÅAromatic
C15N16sing1.37Å1.33ÅAromatic
N28C29sing1.47Å1.22Å
N28C27sing1.47Å1.44Å
C21N20sing1.40Å1.45Å
C21C22doub1.39Å1.40ÅAromatic
C19N20sing1.39Å1.42Å
C19N18doub1.32Å1.32ÅAromatic
C17N16sing1.37Å1.34ÅAromatic
C17N18sing1.33Å1.36ÅAromatic
C23C22sing1.38Å1.40ÅAromatic
C06C07sing1.47Å1.53Å
C26C27sing1.53Å1.54Å
C07N08trip1.14Å1.15Å
C10H101sing1.08Å1.08Å
C15H151sing1.08Å1.08Å
C22H221sing1.08Å1.08Å
C26H261sing1.09Å1.10Å
C26H262sing1.09Å1.10Å
C04H042sing1.09Å1.10Å
C04H041sing1.09Å1.10Å
C06H061sing1.09Å1.10Å
C06H062sing1.09Å1.10Å
C14H141sing1.08Å1.08Å
C23H231sing1.08Å1.08Å
C25H251sing1.09Å1.10Å
C27H272sing1.09Å1.10Å
C27H271sing1.09Å1.10Å
C29H291sing1.09Å1.10Å
C29H293sing1.09Å1.10Å
C29H292sing1.09Å1.10Å
C30H302sing1.09Å1.10Å
C30H301sing1.09Å1.10Å
C31H312sing1.09Å1.10Å
C31H311sing1.09Å1.10Å
C34H341sing1.08Å1.08Å
C36H361sing1.08Å1.08Å
C38H382sing1.09Å1.10Å
C38H381sing1.09Å1.10Å
C39H392sing1.09Å1.10Å
C39H391sing1.09Å1.10Å
C40H402sing1.09Å1.10Å
C40H403sing1.09Å1.10Å
C40H401sing1.09Å1.10Å
N16H161sing0.97Å1.00Å
N20H201sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O41S02O01108.6°121.0°
O41S02C39111.4°110.6°
O41S02N03105.8°104.3°
O01S02C39113.5°110.5°
O01S02N03111.1°104.3°
S02C39C40108.3°109.5°
C39S02N03106.1°104.5°
S02C39H392109.8°109.5°
S02C39H391109.7°109.5°
C40C39H392109.7°109.5°
C40C39H391109.8°109.5°
C39C40H402109.5°109.5°
C39C40H403109.5°109.5°
C39C40H401109.5°109.5°
S02N03C38125.7°134.5°
S02N03C04127.5°134.5°
C38N03C0491.9°91.0°
N03C38C0588.1°86.1°
N03C38H382114.5°113.8°
N03C38H381114.5°113.9°
N03C04C0587.4°86.1°
N03C04H042114.7°113.8°
N03C04H041114.7°113.9°
C38C05C0492.1°86.3°
C38C05N09114.4°113.8°
C38C05C06109.5°113.8°
C05C38H382114.5°113.8°
C05C38H381114.5°113.7°
C04C05N09114.8°113.7°
C04C05C06115.5°113.8°
C05C04H042114.7°113.8°
C05C04H041114.7°113.8°
C30C31C25110.0°109.3°
C31C30N28112.7°109.5°
C31C30H302108.7°109.4°
C31C30H301108.7°109.4°
C30C31H312109.3°109.5°
C30C31H311109.4°109.5°
C31C25C24120.0°109.5°
C31C25C26114.2°109.2°
C31C25H251106.8°109.6°
C25C31H312109.3°109.5°
C25C31H311109.3°109.5°
C30N28C29110.6°111.0°
C30N28C27112.9°111.2°
N28C30H302108.6°109.5°
N28C30H301108.6°109.5°
C36N37N09107.0°108.6°
N37C36C11107.6°108.0°
N37C36H361126.2°126.0°
N37N09C05121.2°125.9°
N37N09C10110.9°108.3°
C36C11C10108.5°107.5°
C36C11C12122.2°126.3°
C11C36H361126.2°126.0°
C05N09C10127.4°125.8°
N09C05C06109.6°113.0°
N09C10C11105.8°107.5°
N09C10H101127.1°126.2°
F33C32C34116.9°120.0°
F33C32C24120.6°120.0°
C05C06C07112.2°109.5°
C05C06H061108.8°109.5°
C05C06H062108.8°109.5°
C10C11C12128.5°126.3°
C11C10H101127.1°126.2°
C11C12N35115.3°120.8°
C11C12C13124.4°120.8°
N35C12C13119.9°118.4°
C12N35C19120.4°120.9°
C12C13C14137.2°135.0°
C12C13C17116.9°118.8°
C34C32C24122.4°120.1°
C32C34C21118.7°119.9°
C32C34H341120.6°120.1°
C32C24C25115.2°120.0°
C32C24C23119.1°120.1°
C13C14C15105.9°106.8°
C14C13C17105.8°106.2°
C13C14H141127.1°126.6°
C14C15N16109.4°109.8°
C14C15H151125.3°125.0°
C15C14H141127.0°126.6°
C34C21N20123.7°120.1°
C34C21C22120.3°119.8°
C21C34H341120.6°120.0°
C24C25C26102.7°109.5°
C25C24C23125.7°120.0°
C24C25H251105.6°109.5°
C25C26C27111.4°109.3°
C25C26H261109.0°109.5°
C25C26H262109.0°109.6°
C26C25H251106.7°109.5°
N35C19N20120.9°118.7°
N35C19N18124.3°122.6°
C13C17N16109.0°107.2°
C13C17N18120.6°118.6°
C24C23C22118.8°120.1°
C24C23H231120.6°119.9°
C15N16C17109.8°110.0°
N16C15H151125.3°125.1°
C15N16H161125.1°125.0°
C29N28C27109.8°111.0°
N28C29H291109.5°109.4°
N28C29H293109.5°109.5°
N28C29H292109.5°109.5°
N28C27C26111.0°109.5°
N28C27H272109.1°109.4°
N28C27H271109.1°109.5°
N20C21C22116.0°120.1°
C21N20C19129.0°120.0°
C21N20H201115.5°120.0°
C21C22C23120.6°120.0°
C21C22H221119.7°120.0°
N20C19N18114.8°118.7°
C19N20H201115.5°120.0°
C19N18C17117.8°120.7°
N16C17N18130.4°134.2°
C17N16H161125.1°125.0°
C23C22H221119.7°120.0°
C22C23H231120.6°120.0°
C06C07N08177.6°180.0°
C07C06H061108.8°109.4°
C07C06H062108.8°109.5°
C27C26H261109.0°109.5°
C27C26H262109.0°109.5°
C26C27H272109.1°109.5°
C26C27H271109.1°109.4°
H261C26H262109.5°109.5°
H042C04H041109.5°112.9°
H061C06H062109.5°109.5°
H272C27H271109.5°109.5°
H291C29H293109.5°109.5°
H291C29H292109.4°109.4°
H293C29H292109.4°109.5°
H302C30H301109.5°109.5°
H312C31H311109.5°109.5°
H382C38H381109.5°112.9°
H392C39H391109.5°109.5°
H402C40H403109.4°109.5°
H402C40H401109.4°109.4°
H403C40H401109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O41S02O01C39124.6°131.6°
O41S02O01N03115.9°116.7°
O41S02C39N03114.7°111.6°
O41S02C39C4059.9°68.4°
O41S02N03C3819.5°153.9°
O41S02N03C04107.5°26.1°
O41S02C39H392179.7°51.6°
O41S02C39H39160.0°171.6°
O01S02C39N03122.3°111.6°
O01S02C39C40177.1°68.4°
O01S02N03C38137.2°26.1°
O01S02N03C0410.2°153.9°
O01S02C39H39257.3°171.6°
O01S02C39H39163.1°51.6°
S02C39C40H392119.8°120.0°
S02C39C40H391119.8°120.0°
C39S02N03C3899.0°90.0°
C39S02N03C04134.0°90.0°
S02C39H392H391120.5°120.0°
S02C39C40H402180.0°60.0°
S02C39C40H40360.0°60.0°
S02C39C40H40160.0°180.0°
C40C39S02N0354.8°180.0°
C40C39H392H391120.5°120.0°
C39C40H402H403120.0°120.1°
C39C40H402H401120.0°120.0°
C39C40H403H401120.0°120.0°
S02N03C38C04140.7°180.0°
S02N03C38C05145.9°155.4°
S02N03C04C05144.8°155.4°
S02N03C04H04228.7°90.3°
S02N03C04H04199.2°41.0°
S02N03C38H38297.9°41.1°
S02N03C38H38129.8°90.3°
N03S02C39H39265.0°60.0°
N03S02C39H391174.6°60.0°
N03C38C05H382116.2°114.3°
N03C38C05H381116.2°114.4°
C38N03C04C055.2°24.6°
N03C38C05N09123.8°90.8°
N03C38C05C06112.8°137.9°
C38N03C04H042110.8°89.7°
C38N03C04H041121.3°139.0°
N03C38H382H381130.2°131.9°
N03C04C05H042116.0°114.3°
N03C04C05H041116.0°114.4°
N03C04C05N09123.5°90.8°
N03C04C05C06107.6°137.9°
N03C04H042H041130.5°131.8°
C04N03C38H382121.4°138.9°
C04N03C38H381110.9°89.7°
C38C05C04N09118.2°114.4°
C38C05C04C06112.8°114.4°
C38C05N09N3736.7°23.8°
C38C05N09C06123.4°131.7°
C38C05N09C10151.8°156.0°
C38C05C06C07175.1°85.1°
C38C05C04H042110.8°90.7°
C38C05C04H041121.3°138.0°
C38C05C06H06154.7°154.9°
C38C05C06H06264.5°34.9°
C05C38H382H381130.2°131.6°
C04C05N09N37141.5°120.4°
C04C05N09C06131.8°131.6°
C04C05N09C1047.1°59.3°
C04C05C06C0772.8°178.3°
C05C04H042H041130.5°131.7°
C04C05C06H06147.6°58.3°
C04C05C06H062166.8°61.7°
C04C05C38H382121.4°137.9°
C04C05C38H381110.9°90.9°
C30C31C25H312120.1°120.0°
C30C31C25H311120.1°120.0°
C31C30N28H302120.5°120.0°
C31C30N28H301120.5°120.0°
C30C31C25C24178.6°177.5°
C30C31C25C2656.2°57.6°
C31C30N28C29173.8°62.4°
C31C30N28C2750.3°61.7°
C30C31C25H25161.5°62.3°
C31C30H302H301118.5°119.9°
C30C31H312H311119.8°120.1°
C25C31C30N285.6°59.2°
C31C25C24C32109.6°120.6°
C31C25C24C26127.9°119.7°
C31C25C24H251120.5°120.2°
C31C25C26H251117.7°119.9°
C31C25C24C2371.0°59.7°
C31C25C26C2749.8°57.6°
C31C25C26H26170.5°62.3°
C31C25C26H262170.1°177.6°
C25C31C30H302114.9°60.8°
C25C31C30H301126.0°179.2°
C25C31H312H311119.7°120.1°
C30N28C29C27125.2°124.2°
C30N28C27C2656.5°61.7°
C30N28C27H272176.8°178.2°
C30N28C27H27163.7°58.2°
C30N28C29H291180.0°60.0°
C30N28C29H29360.0°180.0°
C30N28C29H29260.0°59.9°
N28C30H302H301118.5°120.0°
N28C30C31H312114.5°179.1°
N28C30C31H311125.6°60.8°
N37C36C11H361180.0°180.0°
C36N37N09C05174.1°179.8°
C36N37N09C101.3°0.4°
N37C36C11C104.3°0.0°
N37C36C11C12174.7°180.0°
N09N37C36C111.8°0.3°
N37N09C05C10171.5°179.8°
N37N09C05C0686.7°107.9°
N37N09C10C113.9°0.4°
N37N09C10H101176.1°179.9°
N09N37C36H361178.1°179.7°
C36C11C10N095.0°0.2°
C36C11C10C12169.7°179.9°
C36C11C12N356.5°145.1°
C36C11C12C13179.6°35.0°
C36C11C10H101175.0°179.9°
C05N09C10C11176.1°179.8°
N09C05C06C0758.6°46.7°
C05N09C10H1013.9°0.1°
N09C05C04H0427.4°154.8°
N09C05C04H041120.5°23.6°
N09C05C06H061179.1°73.3°
N09C05C06H06261.8°166.7°
N09C05C38H382120.0°23.6°
N09C05C38H3817.6°154.8°
C10N09C05C0684.8°72.3°
N09C10C11H101180.0°179.7°
N09C10C11C12174.7°179.7°
F33C32C34C24178.3°180.0°
F33C32C34C21178.3°180.0°
F33C32C24C250.3°0.0°
F33C32C24C23179.1°179.7°
F33C32C34H3411.7°0.1°
C05C06C07H061120.4°120.0°
C05C06C07H062120.4°120.0°
C05C06C07N0822.1°34.4°
C06C05C04H042136.4°23.6°
C06C05C04H0418.5°107.6°
C05C06H061H062118.8°120.0°
C06C05C38H3823.4°107.7°
C06C05C38H381131.1°23.5°
C10C11C12N35162.0°35.0°
C10C11C12C1311.2°144.9°
C10C11C36H361175.7°180.0°
C11C12N35C13173.5°180.0°
C11C12C13C148.2°0.4°
C11C12N35C19174.9°180.0°
C11C12C13C17175.5°180.0°
C12C11C10H1015.3°0.0°
C12C11C36H3615.2°0.0°
N35C12C13C14179.0°179.6°
N35C12C13C172.7°0.0°
C12N35C19N20177.5°180.0°
C12N35C19N180.6°0.0°
C12C13C14C17176.6°179.6°
C12C13C14C15178.2°179.7°
C13C12N35C191.4°0.0°
C12C13C17N16179.2°180.0°
C12C13C17N183.2°0.0°
C12C13C14H1411.8°0.4°
C32C34C21H341180.0°179.9°
C34C32C24C25178.5°180.0°
C34C32C24C230.9°0.4°
C32C34C21N20178.6°180.0°
C32C34C21C220.1°0.2°
C24C32C34C210.1°0.1°
C32C24C25C23179.4°179.7°
C32C24C25C26122.5°119.7°
C32C24C23C221.5°0.4°
C32C24C23H231178.5°179.7°
C32C24C25H25110.9°0.4°
C24C32C34H341179.9°179.9°
C13C14C15H141180.0°179.9°
C13C14C15N160.9°0.2°
C14C13C17N161.8°0.3°
C14C13C17N18179.4°179.7°
C13C14C15H151179.1°179.8°
C15C14C13C171.6°0.1°
C14C15N16H151180.0°179.6°
C14C15N16C170.2°0.4°
C14C15N16H161179.7°180.0°
C34C21N20C22178.8°179.7°
C34C21N20C191.7°146.9°
C34C21C22C230.5°0.2°
C34C21C22H221179.5°179.8°
C34C21N20H201178.3°33.1°
C24C25C26H251110.8°120.1°
C25C24C23C22177.8°179.9°
C24C25C26C27178.7°177.5°
C24C25C26H26161.0°57.6°
C24C25C26H26258.4°62.4°
C25C24C23H2312.2°0.1°
C24C25C31H31258.6°62.5°
C24C25C31H31161.3°57.6°
C26C25C24C2356.9°60.0°
C25C26C27N286.8°59.2°
C25C26C27H261120.3°119.9°
C25C26C27H262120.3°120.0°
C25C26H261H262119.1°120.1°
C25C26C27H272127.0°179.1°
C25C26C27H271113.4°60.8°
C26C25C31H31263.9°177.6°
C26C25C31H311176.3°62.3°
N35C19N20C210.7°174.6°
N35C19N20N18178.3°180.0°
N35C19N18C171.1°0.0°
N35C19N20H201179.3°5.4°
C13C17N16C151.3°0.4°
C13C17N18C192.4°0.0°
C13C17N16N18177.3°180.0°
C17C13C14H141178.3°180.0°
C13C17N16H161178.7°180.0°
C24C23C22C211.3°0.1°
C24C23C22H231180.0°179.9°
C24C23C22H221178.7°179.9°
C23C24C25H251168.5°180.0°
C15N16C17H161180.0°179.6°
C15N16C17N18178.6°179.6°
N16C15C14H141179.1°179.7°
C29N28C27C26179.5°62.4°
C29N28C27H27259.2°57.6°
C29N28C27H27160.3°177.6°
N28C29H291H293120.0°120.0°
N28C29H291H292120.0°119.9°
N28C29H293H292120.0°120.1°
C29N28C30H30265.8°177.6°
C29N28C30H30153.3°57.6°
N28C27C26H272120.2°120.0°
N28C27C26H271120.2°120.0°
N28C27C26H261127.1°60.8°
N28C27C26H262113.5°179.2°
N28C27H272H271119.3°120.0°
C27N28C29H29154.7°64.2°
C27N28C29H293174.8°55.8°
C27N28C29H29265.3°175.9°
C27N28C30H302170.7°58.3°
C27N28C30H30170.2°178.3°
C21N20C19H201180.0°180.0°
C21N20C19N18179.0°5.4°
N20C21C22C23179.4°179.9°
N20C21C22H2210.6°0.0°
N20C21C34H3411.4°0.1°
C22C21N20C19177.1°33.4°
C21C22C23H221180.0°180.0°
C21C22C23H231178.7°180.0°
C22C21C34H341179.9°179.6°
C22C21N20H2012.9°146.6°
N20C19N18C17177.1°180.0°
C19N18C17N16179.4°180.0°
N18C19N20H2011.0°174.6°
C17N16C15H151179.8°180.0°
N18C17N16H1611.4°0.0°
C07C06H061H062118.7°120.0°
C27C26H261H262119.1°120.1°
C27C26C25H25167.9°62.3°
C26C27H272H271119.3°120.0°
N08C07C06H061142.5°154.4°
N08C07C06H06298.3°85.7°
H151C15C14H1410.9°0.1°
H151C15N16H1610.3°0.4°
H221C22C23H2311.3°0.0°
H261C26C25H251171.8°177.7°
H261C26C27H272112.6°59.2°
H261C26C27H2716.9°179.2°
H262C26C25H25152.4°57.7°
H262C26C27H2726.8°60.8°
H262C26C27H271126.3°59.2°
H251C25C31H312178.5°57.7°
H251C25C31H31158.6°177.8°
H291C29H293H292120.0°120.0°
H302C30C31H312125.0°59.1°
H302C30C31H3115.2°179.2°
H301C30C31H3126.0°60.9°
H301C30C31H311113.9°59.2°
H392C39C40H40260.2°60.0°
H392C39C40H403179.8°180.0°
H392C39C40H40159.8°60.0°
H391C39C40H40260.2°180.0°
H391C39C40H40359.8°60.0°
H391C39C40H401179.8°60.0°
H402C40H403H401119.9°119.9°

222415

PDB entries from 2024-07-10

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