Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

Y4F

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O29P27doub1.48Å1.50Å
C25O26sing1.43Å1.45Å
C25C24sing1.53Å1.51Å
O26P27sing1.61Å1.61Å
P27O30sing1.61Å1.50Å
P27O28sing1.61Å1.61Å
O31C24sing1.43Å1.45Å
O31C32sing1.43Å1.41Å
C24C22sing1.55Å1.53Å
N35C34doub1.30Å1.31ÅAromatic
N35C37sing1.36Å1.39ÅAromatic
C34N33sing1.36Å1.38ÅAromatic
N64C38sing1.38Å1.33Å
O28C3'sing1.43Å1.42Å
C37C38doub1.40Å1.38ÅAromatic
C37C36sing1.40Å1.39ÅAromatic
N33C32sing1.46Å1.46Å
N33C36sing1.37Å1.38ÅAromatic
O2'C2'sing1.43Å1.41Å
C38N39sing1.33Å1.37ÅAromatic
C32C21sing1.54Å1.52Å
C36N42doub1.33Å1.35ÅAromatic
C22C21sing1.55Å1.52Å
C22O23sing1.43Å1.42Å
N39C40doub1.32Å1.33ÅAromatic
C21O20sing1.42Å1.43Å
N42C40sing1.32Å1.36ÅAromatic
C3'C2'sing1.55Å1.53Å
C3'C4'sing1.53Å1.52Å
C2'C1'sing1.54Å1.53Å
C1'N9sing1.46Å1.46Å
C1'O4'sing1.43Å1.41Å
C4'O4'sing1.43Å1.45Å
C4'C16sing1.53Å1.51Å
O20P18sing1.61Å1.61Å
O19P18doub1.48Å1.50Å
C8N9sing1.36Å1.38ÅAromatic
C8N7doub1.30Å1.31ÅAromatic
N9C4sing1.37Å1.37ÅAromatic
O17P18sing1.61Å1.61Å
O17C16sing1.43Å1.45Å
P18O44sing1.61Å1.50Å
N7C5sing1.35Å1.39ÅAromatic
C4N3doub1.33Å1.34ÅAromatic
C4C5sing1.41Å1.38ÅAromatic
N3C2sing1.32Å1.33ÅAromatic
C5C6doub1.40Å1.41ÅAromatic
C2N1doub1.32Å1.34ÅAromatic
C6N1sing1.33Å1.36ÅAromatic
C6N01sing1.38Å1.33Å
C8H4sing1.08Å1.08Å
C1'H5sing1.09Å1.10Å
C16H10sing1.09Å1.10Å
C16H11sing1.09Å1.10Å
C2H1sing1.08Å1.08Å
C2'H6sing1.09Å1.10Å
C21H13sing1.09Å1.10Å
C22H14sing1.08Å1.10Å
C24H16sing1.09Å1.10Å
C25H17sing1.09Å1.10Å
C25H18sing1.09Å1.10Å
C3'H8sing1.09Å1.10Å
C32H20sing1.09Å1.10Å
C34H21sing1.08Å1.08Å
C4'H9sing1.09Å1.10Å
C40H12sing1.08Å1.08Å
N01H2sing0.97Å1.00Å
N01H3sing0.97Å1.00Å
N64H23sing0.97Å1.00Å
N64H22sing0.97Å1.00Å
O2'H7sing0.97Å0.95Å
O23H15sing0.97Å0.95Å
O30H19sing0.97Å0.95Å
O44H24sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O29P27O26108.9°109.5°
O29P27O30117.8°109.0°
O29P27O28108.6°109.6°
O26C25C24109.3°109.6°
C25O26P27117.3°122.8°
O26C25H17109.5°109.4°
O26C25H18109.5°109.8°
C25C24O31109.1°109.7°
C25C24C22115.4°109.4°
C25C24H16108.9°110.7°
C24C25H17109.5°109.4°
C24C25H18109.5°109.4°
O26P27O30106.6°109.3°
O26P27O28101.3°110.2°
O30P27O28112.3°109.1°
P27O30H19109.5°114.0°
P27O28C3'111.7°125.0°
C24O31C32109.9°111.2°
O31C24C22104.9°106.7°
O31C24H16109.7°110.5°
O31C32N33107.9°109.8°
O31C32C21106.4°107.0°
O31C32H20111.1°109.8°
C24C22C21102.7°102.4°
C24C22O23108.9°110.4°
C24C22H14110.7°111.0°
C22C24H16108.6°109.8°
C34N35C37105.2°109.4°
N35C34N33112.9°110.0°
N35C34H21123.5°125.0°
N35C37C38131.5°134.7°
N35C37C36109.5°107.1°
C34N33C32126.6°126.3°
C34N33C36105.9°107.4°
N33C34H21123.6°125.0°
N64C38C37122.7°120.8°
N64C38N39117.5°120.8°
C38N64H23109.5°120.1°
C38N64H22109.5°120.0°
O28C3'C2'108.4°109.8°
O28C3'C4'113.6°111.5°
O28C3'H8112.2°110.4°
C38C37C36119.0°118.2°
C37C38N39119.9°118.4°
C37C36N33106.5°106.0°
C37C36N42120.0°119.0°
C32N33C36127.4°126.3°
N33C32C21111.6°109.9°
N33C32H20110.3°110.4°
N33C36N42133.5°134.9°
O2'C2'C3'114.9°110.3°
O2'C2'C1'109.0°110.4°
O2'C2'H6111.7°110.7°
C2'O2'H7109.5°114.0°
C38N39C40119.5°121.2°
C32C21C22100.0°102.8°
C32C21O20116.5°111.5°
C32C21H13110.3°110.1°
C21C32H20109.5°110.0°
C36N42C40119.4°120.6°
C21C22O23110.9°110.4°
C22C21O20107.3°111.1°
C22C21H13110.3°110.0°
C21C22H14110.8°111.1°
O23C22H14112.4°111.2°
C22O23H15109.5°114.0°
N39C40N42122.2°122.5°
N39C40H12118.9°118.8°
C21O20P18114.5°122.5°
O20C21H13111.7°111.0°
N42C40H12118.8°118.8°
C2'C3'C4'100.9°105.0°
C3'C2'C1'100.7°104.4°
C3'C2'H6109.9°110.4°
C2'C3'H8110.5°109.9°
C3'C4'O4'105.7°108.2°
C3'C4'C16114.2°109.8°
C4'C3'H8110.6°110.2°
C3'C4'H9109.0°110.6°
C2'C1'N9117.2°109.8°
C2'C1'O4'105.6°107.6°
C2'C1'H5107.8°109.8°
C1'C2'H6110.0°110.5°
N9C1'O4'108.2°109.9°
C1'N9C8127.6°126.3°
C1'N9C4125.9°126.3°
N9C1'H5108.7°110.0°
C1'O4'C4'109.8°109.3°
O4'C1'H5109.3°109.8°
O4'C4'C16108.8°109.3°
O4'C4'H9109.9°109.3°
C4'C16O17110.4°109.2°
C4'C16H10109.2°109.6°
C4'C16H11109.2°109.4°
C16C4'H9109.1°109.7°
O20P18O19110.3°109.5°
O20P18O17103.8°109.0°
O20P18O44108.5°109.5°
O19P18O17107.6°109.7°
O19P18O44117.2°109.6°
N9C8N7112.5°110.0°
C8N9C4106.5°107.4°
N9C8H4123.8°125.0°
C8N7C5104.6°109.5°
N7C8H4123.8°125.0°
N9C4N3126.7°135.0°
N9C4C5106.1°106.0°
P18O17C16119.6°123.0°
O17P18O44108.6°109.5°
O17C16H10109.3°109.8°
O17C16H11109.2°109.4°
P18O44H24109.5°114.0°
N7C5C4110.3°107.1°
N7C5C6132.6°134.7°
N3C4C5127.2°119.0°
C4N3C2110.5°120.7°
C4C5C6117.1°118.2°
N3C2N1129.2°122.5°
N3C2H1115.4°118.8°
C5C6N1117.3°118.4°
C5C6N01123.8°120.8°
C2N1C6118.7°121.2°
N1C2H1115.4°118.7°
N1C6N01118.9°120.8°
C6N01H2109.5°120.0°
C6N01H3109.5°120.0°
H10C16H11109.5°109.5°
H17C25H18109.4°109.2°
H2N01H3109.5°120.0°
H23N64H22109.4°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O29P27O26C2539.1°89.5°
O29P27O26O30128.0°119.4°
O29P27O26O28114.3°120.7°
O29P27O30O28127.3°119.7°
O29P27O28C3'148.5°55.5°
O29P27O30H190.0°59.7°
O26C25C24H17120.0°119.9°
O26C25C24H18120.0°120.5°
C25O26P27O30167.1°29.8°
C25O26P27O2875.2°149.8°
O26C25C24O3160.4°79.4°
O26C25C24C2257.3°37.2°
O26C25C24H16179.8°158.4°
O26C25H17H18120.1°120.2°
C24C25O26P27128.9°115.3°
C25C24O31C22124.2°118.4°
C25C24O31H16119.3°122.3°
C25C24O31C32119.3°106.8°
C25C24C22H16122.7°121.7°
C25C24C22C2192.3°91.8°
C25C24C22O23150.2°150.6°
C25C24C22H1426.1°26.8°
C24C25H17H18120.1°119.7°
O26P27O30O28110.1°120.6°
O26P27O28C3'96.9°65.1°
P27O26C25H178.9°124.8°
P27O26C25H18111.1°4.9°
O26P27O30H19122.6°60.0°
O30P27O28C3'16.4°174.9°
P27O28C3'C2'94.4°170.5°
P27O28C3'C4'154.3°54.6°
P27O28C3'H827.9°68.2°
O28P27O30H19127.3°179.4°
O31C24C22H16117.3°119.7°
C24O31C32N33140.2°128.1°
C24O31C32C2120.4°8.9°
O31C24C22C2127.8°26.7°
O31C24C22O2389.8°90.9°
O31C24C22H14146.2°145.4°
O31C24C25H17179.6°40.5°
O31C24C25H1859.5°160.1°
C24O31C32H2098.7°110.4°
C32O31C24C224.9°11.5°
O31C32N33C3462.8°22.4°
O31C32N33C21116.5°117.4°
O31C32N33H20121.5°121.2°
O31C32N33C36117.0°157.6°
O31C32C21H20120.1°119.2°
O31C32C21C2236.7°25.3°
O31C32C21O20151.9°144.4°
O31C32C21H1379.5°91.8°
C32O31C24H16121.4°130.8°
C24C22C21C3238.4°30.8°
C24C22C21O23116.2°117.6°
C24C22C21H14118.3°118.6°
C24C22O23H14123.1°123.7°
C24C22C21O20160.3°150.2°
C24C22C21H1377.8°86.5°
C22C24C25H1762.7°157.2°
C22C24C25H18177.3°83.2°
C24C22O23H15180.0°67.5°
N35C34N33H21180.0°179.8°
C34N35C37C38179.9°179.8°
C34N35C37C360.2°0.3°
N35C34N33C32179.9°179.7°
N35C34N33C360.0°0.2°
C37N35C34N330.1°0.1°
N35C37C38N640.1°0.1°
N35C37C38C36179.9°179.9°
N35C37C36N330.1°0.4°
N35C37C38N39179.8°179.9°
N35C37C36N42179.8°180.0°
C37N35C34H21179.8°179.7°
C34N33C36C370.1°0.3°
C34N33C32C36179.9°179.9°
C34N33C32C2153.6°95.0°
C34N33C36N42179.7°179.8°
C34N33C32H20175.6°143.6°
N64C38C37N39179.9°180.0°
N64C38C37C36179.8°180.0°
N64C38N39C40180.0°180.0°
C38N64H23H22120.0°179.9°
O28C3'C2'O2'37.6°5.4°
O28C3'C2'C4'119.6°119.9°
O28C3'C2'H8123.3°121.6°
O28C3'C4'H8127.2°122.9°
O28C3'C2'C1'79.4°113.2°
O28C3'C4'O4'84.8°126.4°
O28C3'C4'C16155.6°114.5°
O28C3'C2'H6164.6°128.1°
O28C3'C4'H933.3°6.7°
C38C37C36N33179.9°179.7°
C38C37C36N420.2°0.1°
C37C38N39C400.1°0.0°
C37C38N64H23180.0°0.1°
C37C38N64H2260.1°180.0°
C37C36N33C32180.0°179.6°
C37C36N33N42179.6°179.5°
C36C37C38N390.3°0.0°
C37C36N42C400.1°0.2°
N33C32C21H20122.5°121.7°
C32N33C36N420.4°0.1°
N33C32C21C22154.1°144.4°
N33C32C21O2090.7°96.4°
N33C32C21H1338.0°27.3°
C32N33C34H210.2°0.0°
C36N33C32C21126.5°85.1°
N33C36N42C40179.7°179.6°
C36N33C32H204.5°36.4°
C36N33C34H21179.9°179.9°
O2'C2'C3'C1'117.0°118.6°
O2'C2'C3'H6127.0°122.6°
O2'C2'C3'C4'157.2°125.3°
O2'C2'C1'H6122.8°122.7°
O2'C2'C1'N981.7°102.9°
O2'C2'C1'O4'157.9°137.6°
O2'C2'C1'H541.2°18.1°
O2'C2'C3'H885.7°116.2°
C38N39C40N420.1°0.1°
C38N39C40H12179.9°179.9°
N39C38N64H230.0°180.0°
N39C38N64H22120.0°0.1°
C32C21C22O20121.9°119.4°
C32C21C22H13116.2°117.3°
C32C21C22O2377.8°86.8°
C32C21O20H13128.0°123.2°
C32C21O20P1886.7°139.4°
C32C21C22H14156.7°149.4°
C36N42C40N390.1°0.2°
C36N42C40H12179.9°180.0°
C21C22O23H14124.6°123.8°
C22C21O20H13121.0°122.7°
C22C21O20P18162.3°106.5°
C21C22C24H16145.1°146.4°
C22C21C32H2083.4°93.9°
C21C22O23H1567.7°180.0°
O23C22C21O2044.1°32.6°
O23C22C21H13166.0°156.0°
O23C22C24H1627.5°28.8°
N39C40N42H12180.0°179.9°
C21O20P18O1947.6°106.5°
C21O20P18O1767.4°13.4°
C21O20P18O44177.2°133.2°
O20C21C22H1481.4°91.2°
O20C21C32H2031.7°25.2°
C2'C3'C4'H8117.0°118.3°
C3'C2'C1'H6116.0°118.7°
C3'C2'C1'N9157.1°138.6°
C3'C2'C1'O4'36.7°19.0°
C2'C3'C4'O4'31.0°7.6°
C2'C3'C4'C1688.6°126.8°
C3'C2'C1'H580.1°100.4°
C2'C3'C4'H9149.1°112.1°
C3'C2'O2'H7180.0°176.4°
C4'C3'C2'C1'40.2°6.7°
C3'C4'O4'C1'8.6°20.4°
C3'C4'O4'C16123.1°119.5°
C3'C4'O4'H9117.5°120.5°
C3'C4'C16H9122.2°121.7°
C3'C4'C16O1754.8°127.3°
C3'C4'C16H1065.4°7.1°
C3'C4'C16H11174.9°112.9°
C4'C3'C2'H675.8°112.0°
C2'C1'N9O4'119.0°118.1°
C2'C1'N9H5122.4°120.9°
C2'C1'O4'H5115.7°119.4°
C2'C1'O4'C4'17.9°24.9°
C2'C1'N9C8126.6°94.6°
C2'C1'N9C451.5°85.9°
C1'C2'C3'H8157.3°125.2°
C1'C2'O2'H767.9°61.5°
N9C1'O4'H5118.2°121.1°
N9C1'O4'C4'144.0°144.4°
C1'N9C8C4178.4°179.6°
C1'N9C8N7178.0°180.0°
C1'N9C4N31.8°0.4°
C1'N9C4C5178.1°180.0°
C1'N9C8H42.0°0.1°
N9C1'C2'H641.1°19.9°
C1'O4'C4'C16114.4°139.9°
O4'C1'N9C8114.3°23.5°
O4'C1'N9C467.5°156.0°
O4'C1'C2'H679.3°99.7°
C1'O4'C4'H9126.1°100.1°
O4'C4'C16H9120.0°119.8°
O4'C4'C16O17172.6°114.2°
C4'O4'C1'H597.8°94.6°
O4'C4'C16H1052.4°125.6°
O4'C4'C16H1167.3°5.6°
O4'C4'C3'H8148.0°110.7°
C4'C16O17P1892.8°176.5°
C4'C16O17H10120.1°120.2°
C4'C16O17H11120.1°119.7°
C4'C16H10H11119.6°119.9°
C16C4'C3'H828.4°8.5°
O20P18O19O17112.5°119.6°
O20P18O19O44124.8°120.2°
O20P18O17O44115.3°119.8°
O20P18O17C1663.4°90.1°
P18O20C21H1341.3°16.2°
O20P18O44H24125.7°179.5°
O19P18O17O44127.8°120.4°
O19P18O17C16179.8°29.8°
O19P18O44H240.0°60.3°
N9C8N7H4180.0°180.0°
N9C8N7C50.3°0.2°
C8N9C4N3179.7°179.9°
C8N9C4C50.4°0.4°
C8N9C1'H54.3°144.5°
N7C8N9C40.4°0.4°
C8N7C5C40.1°0.0°
C8N7C5C6180.0°180.0°
N9C4C5N70.2°0.3°
N9C4N3C5179.9°179.6°
N9C4N3C2180.0°179.6°
N9C4C5C6179.7°179.7°
C4N9C8H4179.5°179.6°
C4N9C1'H5173.9°35.0°
P18O17C16H10147.1°56.3°
P18O17C16H1127.4°63.9°
O17P18O44H24122.1°60.1°
C16O17P18O4452.0°150.1°
O17C16H10H11119.6°120.1°
O17C16C4'H967.4°5.6°
N7C5C4N3179.9°180.0°
N7C5C4C6179.9°180.0°
N7C5C6N1179.9°180.0°
N7C5C6N010.5°0.0°
C5N7C8H4179.7°179.8°
N3C4C5C60.2°0.0°
C4N3C2N10.5°0.0°
C4N3C2H1179.5°180.0°
C5C4N3C20.1°0.0°
C4C5C6N10.0°0.0°
C4C5C6N01179.4°180.0°
N3C2N1H1180.0°179.9°
N3C2N1C60.8°0.0°
C5C6N1C20.4°0.0°
C5C6N1N01179.4°180.0°
C5C6N01H2179.4°0.0°
C5C6N01H359.3°180.0°
C2N1C6N01179.8°180.0°
C6N1C2H1179.3°180.0°
N1C6N01H20.0°180.0°
N1C6N01H3120.0°0.0°
C6N01H2H3120.0°179.9°
H5C1'C2'H6164.0°140.9°
H10C16C4'H9172.4°114.6°
H11C16C4'H952.7°125.4°
H6C2'C3'H841.3°6.4°
H6C2'O2'H753.9°61.2°
H13C21C22H1440.5°32.1°
H13C21C32H20160.4°148.9°
H14C22C24H1696.5°94.9°
H14C22O23H1556.9°56.2°
H16C24C25H1759.8°81.6°
H16C24C25H1860.2°38.0°
H8C3'C4'H993.9°129.6°

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon