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Y40

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.47Å1.50Å
N1C5sing1.47Å1.46Å
N1C15sing1.35Å1.33Å
C2C3sing1.54Å1.55Å
C3C4sing1.55Å1.56Å
C3C6sing1.53Å1.54Å
C4C5sing1.54Å1.53Å
C4C7sing1.54Å1.53Å
C6C7sing1.55Å1.55Å
C6C8sing1.54Å1.55Å
C7C10sing1.54Å1.52Å
C8N9sing1.47Å1.49Å
N9C10sing1.47Å1.47Å
N9C17sing1.35Å1.36Å
C15O16doub1.21Å1.21Å
C15C28sing1.48Å1.51Å
C17C18sing1.48Å1.49Å
C17O19doub1.22Å1.22Å
C18C20doub1.40Å1.40ÅAromatic
C18C22sing1.39Å1.42ÅAromatic
C20C21sing1.36Å1.38ÅAromatic
C21C24doub1.39Å1.40ÅAromatic
C22C23doub1.40Å1.42ÅAromatic
C23C24sing1.41Å1.41ÅAromatic
C23N27sing1.35Å1.37ÅAromatic
C24N25sing1.37Å1.38ÅAromatic
N25N26sing1.40Å1.40ÅAromatic
N26N27doub1.29Å1.29ÅAromatic
C28N29doub1.32Å1.33ÅAromatic
C28C31sing1.40Å1.39ÅAromatic
N29C33sing1.33Å1.37ÅAromatic
C30C32sing1.41Å1.38ÅAromatic
C30C31doub1.38Å1.40ÅAromatic
C30O38sing1.36Å1.34Å
C32C33doub1.42Å1.40ÅAromatic
C32C37sing1.40Å1.42ÅAromatic
C33C34sing1.41Å1.42ÅAromatic
C34C35doub1.36Å1.39ÅAromatic
C35C36sing1.39Å1.42ÅAromatic
C36C37doub1.36Å1.37ÅAromatic
O38C39sing1.43Å1.44Å
C39C40sing1.53Å1.51Å
C40O41sing1.43Å1.43Å
O41C42sing1.43Å1.41Å
C2H44sing1.09Å1.10Å
C2H43sing1.09Å1.10Å
C3H12sing1.09Å1.10Å
C4H11sing1.09Å1.10Å
C5H45sing1.09Å1.10Å
C5H46sing1.09Å1.10Å
C6H14sing1.09Å1.10Å
C7H13sing1.09Å1.10Å
C8H48sing1.09Å1.10Å
C8H47sing1.09Å1.10Å
C10H49sing1.09Å1.10Å
C10H50sing1.09Å1.10Å
C20H51sing1.08Å1.08Å
C21H52sing1.08Å1.08Å
C22H53sing1.08Å1.08Å
N25H54sing0.97Å1.00Å
C31H55sing1.08Å1.08Å
C34H56sing1.08Å1.08Å
C35H57sing1.08Å1.08Å
C36H58sing1.08Å1.08Å
C37H59sing1.08Å1.08Å
C39H61sing1.09Å1.10Å
C39H60sing1.09Å1.10Å
C40H62sing1.09Å1.10Å
C40H63sing1.09Å1.10Å
C42H64sing1.09Å1.10Å
C42H66sing1.09Å1.10Å
C42H65sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C5110.3°109.4°
C2N1C15126.4°125.3°
N1C2C3106.6°106.7°
N1C2H44110.2°110.0°
N1C2H43110.2°110.0°
C5N1C15123.1°125.3°
N1C5C4106.2°108.0°
N1C5H45110.3°109.8°
N1C5H46110.3°109.8°
N1C15O16118.4°120.0°
N1C15C28123.8°120.0°
C2C3C4102.2°103.7°
C2C3C6117.5°113.8°
C3C2H44110.2°110.0°
C3C2H43110.2°110.0°
C2C3H12114.9°115.0°
C4C3C688.8°87.2°
C3C4C5108.6°104.5°
C3C4C790.1°87.1°
C4C3H12114.7°116.6°
C3C4H11115.8°116.6°
C3C6C790.2°87.2°
C3C6C8115.3°113.8°
C6C3H12115.0°116.8°
C3C6H14115.1°116.0°
C5C4C7106.4°113.2°
C5C4H11116.4°115.0°
C4C5H45110.3°109.8°
C4C5H46110.3°109.7°
C4C7C689.4°87.0°
C4C7C10109.2°113.2°
C7C4H11116.3°116.8°
C4C7H13116.0°116.0°
C7C6C8103.3°103.7°
C6C7C10107.0°104.5°
C7C6H14114.9°116.6°
C6C7H13115.6°116.6°
C6C8N9100.3°106.7°
C8C6H14114.9°115.6°
C6C8H48111.7°110.0°
C6C8H47111.7°110.0°
C7C10N9103.8°107.9°
C10C7H13116.3°115.7°
C7C10H49110.9°109.8°
C7C10H50110.8°109.7°
C8N9C10107.9°109.4°
C8N9C17125.9°125.3°
N9C8H48111.7°110.0°
N9C8H47111.7°110.0°
C10N9C17126.2°125.3°
N9C10H49110.9°109.8°
N9C10H50110.9°109.8°
N9C17C18118.5°120.0°
N9C17O19119.8°120.0°
O16C15C28117.6°120.0°
C15C28N29116.0°119.2°
C15C28C31122.9°119.2°
C18C17O19121.7°120.0°
C17C18C20116.8°119.9°
C17C18C22121.3°119.9°
C20C18C22121.9°120.3°
C18C20C21119.7°120.4°
C18C20H51120.2°119.8°
C18C22C23117.8°119.6°
C18C22H53121.1°120.2°
C20C21C24120.0°120.2°
C21C20H51120.1°119.8°
C20C21H52120.0°119.9°
C21C24C23121.2°120.2°
C21C24N25131.3°133.7°
C24C21H52120.0°119.9°
C22C23C24119.3°119.4°
C22C23N27133.6°133.1°
C23C22H53121.1°120.1°
C24C23N27107.0°107.6°
C23C24N25107.4°106.1°
C23N27N26108.9°110.2°
C24N25N26105.2°106.7°
C24N25H54127.4°126.7°
N25N26N27111.4°109.5°
N26N25H54127.4°126.7°
N29C28C31120.7°121.6°
C28N29C33121.9°121.6°
C28C31C30118.3°119.6°
C28C31H55120.9°120.3°
N29C33C32119.7°120.1°
N29C33C34122.3°120.9°
C32C30C31120.5°118.0°
C32C30O38116.3°121.1°
C30C32C33118.8°119.1°
C30C32C37118.9°121.2°
C31C30O38123.1°120.9°
C30C31H55120.9°120.2°
C30O38C39110.1°117.1°
C33C32C37122.3°119.7°
C32C33C34118.1°119.0°
C32C37C36118.8°119.6°
C32C37H59120.6°120.2°
C33C34C35119.0°119.8°
C33C34H56120.5°120.1°
C34C35C36122.3°121.1°
C35C34H56120.5°120.1°
C34C35H57118.9°119.5°
C35C36C37119.5°120.9°
C36C35H57118.9°119.5°
C35C36H58120.2°119.5°
C37C36H58120.2°119.6°
C36C37H59120.6°120.2°
O38C39C40106.7°109.5°
O38C39H61110.2°109.4°
O38C39H60110.2°109.4°
C39C40O41115.1°109.5°
C40C39H61110.2°109.5°
C40C39H60110.2°109.5°
C39C40H62108.0°109.4°
C39C40H63108.0°109.4°
C40O41C42118.6°114.0°
O41C40H62108.1°109.5°
O41C40H63108.1°109.5°
O41C42H64109.5°109.5°
O41C42H66109.5°109.5°
O41C42H65109.5°109.5°
H44C2H43109.5°110.0°
H45C5H46109.4°109.8°
H48C8H47109.5°110.0°
H49C10H50109.5°109.8°
H61C39H60109.5°109.5°
H62C40H63109.5°109.5°
H64C42H66109.4°109.4°
H64C42H65109.5°109.5°
H66C42H65109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C5C15175.5°179.7°
N1C2C3H44119.5°119.4°
N1C2C3H43119.5°119.3°
N1C2C3C424.7°27.4°
N1C2C3C670.5°65.6°
C2N1C5C48.7°1.2°
C2N1C15O162.9°0.0°
C2N1C15C28177.7°180.0°
N1C2H44H43121.4°121.3°
N1C2C3H12149.5°155.9°
C2N1C5H45110.8°118.4°
C2N1C5H46128.2°120.8°
C5N1C2C321.8°18.1°
N1C5C4C37.6°15.9°
N1C5C4H45119.5°119.7°
N1C5C4H46119.5°119.6°
N1C5C4C7103.4°109.0°
C5N1C15O16177.7°179.6°
C5N1C15C287.6°0.3°
C5N1C2H44141.3°137.5°
C5N1C2H4397.8°101.2°
N1C5C4H11125.2°113.2°
N1C5H45H46121.5°120.8°
C15N1C2C3162.9°162.2°
C15N1C5C4175.7°179.1°
N1C15O16C28175.1°179.9°
N1C15C28N2966.2°0.1°
N1C15C28C31121.0°179.7°
C15N1C2H4443.4°42.8°
C15N1C2H4377.6°78.5°
C15N1C5H4564.8°61.3°
C15N1C5H4656.2°59.5°
C2C3C4C6117.9°113.8°
C2C3C4H12125.0°127.5°
C2C3C6H12140.0°137.7°
C2C3C4C519.8°26.0°
C2C3C4C7127.2°139.2°
C2C3C6C7112.3°129.0°
C2C3C6C8142.9°127.2°
C3C2H44H43121.3°121.4°
C2C3C4H11113.2°102.2°
C2C3C6H145.5°10.6°
C4C3C6H12116.8°118.5°
C3C4C5C795.8°93.1°
C3C4C5H11132.7°129.1°
C3C4C7H11119.1°118.5°
C4C3C6C79.1°25.2°
C4C3C6C8113.9°129.0°
C3C4C7C1098.6°79.3°
C4C3C2H44144.2°146.7°
C4C3C2H4394.9°91.9°
C3C4C5H45127.1°135.6°
C3C4C5H46112.0°103.6°
C4C3C6H14108.7°93.2°
C3C4C7H13127.6°143.4°
C6C3C4C598.1°87.9°
C3C6C7C8116.1°113.8°
C3C6C7H14118.0°117.8°
C3C6C8H14137.5°137.9°
C3C6C7C10100.6°87.8°
C3C6C8N962.3°65.7°
C6C3C2H4449.1°53.7°
C6C3C2H43170.0°175.1°
C6C3C4H11128.8°144.0°
C3C6C7H13128.1°143.1°
C3C6C8H48179.2°175.1°
C3C6C8H4756.2°53.6°
C5C4C7H11131.5°137.0°
C5C4C7C6100.3°79.4°
C5C4C7C10152.0°176.2°
C5C4C3H12144.8°153.5°
C4C5H45H46121.5°120.7°
C5C4C7H1318.2°38.9°
C4C7C6C10109.9°113.2°
C4C7C6H13118.8°117.7°
C4C7C6C8125.4°139.2°
C4C7C10H13133.7°137.4°
C4C7C10N985.3°109.0°
C7C4C3H12107.9°93.3°
C7C4C5H45137.1°131.4°
C7C4C5H4616.1°10.6°
C4C7C6H14108.7°92.4°
C4C7C10H4933.8°10.6°
C4C7C10H50155.6°131.4°
C7C6C8H14125.9°129.0°
C6C7C10H13130.9°129.6°
C7C6C8N934.3°27.4°
C6C7C10N910.1°16.0°
C7C6C3H12107.7°93.3°
C6C7C4H11128.3°143.6°
C7C6C8H4884.2°91.9°
C7C6C8H47152.8°146.7°
C6C7C10H49129.2°103.6°
C6C7C10H50109.0°135.6°
C8C6C7C1015.5°26.0°
C6C8N9H48118.5°119.3°
C6C8N9H47118.5°119.3°
C6C8N9C1043.4°18.1°
C6C8N9C17137.9°161.9°
C8C6C3H122.9°10.5°
C8C6C7H13115.9°103.0°
C6C8H48H47124.3°121.4°
C7C10N9C834.0°1.1°
C7C10N9H49119.1°119.6°
C7C10N9H50119.1°119.6°
C7C10N9C17147.2°178.9°
C10C7C4H1120.5°39.1°
C10C7C6H14141.4°154.4°
C7C10H49H50122.6°120.7°
C8N9C10C17178.8°180.0°
C8N9C17C18179.6°175.1°
C8N9C17O190.4°4.9°
N9C8C6H14160.3°156.4°
N9C8H48H47124.3°121.3°
C8N9C10H49153.1°120.8°
C8N9C10H5085.1°118.4°
C10N9C17C181.9°4.8°
C10N9C17O19178.9°175.1°
N9C10C7H13141.0°113.6°
C10N9C8H4875.1°101.2°
C10N9C8H47161.9°137.4°
N9C10H49H50122.6°120.8°
N9C17C18O19179.2°180.0°
N9C17C18C2078.0°43.0°
N9C17C18C2298.5°137.4°
C17N9C8H48103.6°78.8°
C17N9C8H4719.4°42.6°
C17N9C10H4928.2°59.2°
C17N9C10H5093.7°61.6°
O16C15C28N29108.5°180.0°
O16C15C28C3164.2°0.2°
C15C28N29C31172.9°179.8°
C15C28N29C33178.0°180.0°
C15C28C31C30178.1°180.0°
C15C28C31H551.9°0.0°
C17C18C20C22176.5°179.7°
C17C18C20C21179.9°180.0°
C17C18C22C23179.9°180.0°
C17C18C20H510.1°0.0°
C17C18C22H530.1°0.0°
O19C17C18C20101.2°137.0°
O19C17C18C2282.3°42.7°
C18C20C21H51180.0°179.9°
C18C20C21C242.9°0.0°
C20C18C22C233.8°0.3°
C18C20C21H52177.1°179.9°
C20C18C22H53176.2°179.7°
C22C18C20C213.6°0.4°
C18C22C23H53180.0°180.0°
C18C22C23C243.3°0.0°
C18C22C23N27179.7°179.9°
C22C18C20H51176.4°179.7°
C20C21C24H52180.0°180.0°
C20C21C24C232.5°0.3°
C20C21C24N25177.9°180.0°
C21C24C23C222.7°0.3°
C21C24C23N25179.7°179.8°
C21C24C23N27180.0°179.8°
C21C24N25N26179.8°180.0°
C24C21C20H51177.1°180.0°
C21C24N25H540.3°0.1°
C22C23C24N27177.3°179.9°
C22C23C24N25177.6°179.9°
C22C23N27N26177.1°179.6°
C23C24N25N260.1°0.3°
C24C23N27N260.4°0.3°
C23C24C21H52177.5°179.7°
C24C23C22H53176.7°180.0°
C23C24N25H54179.9°179.8°
N27C23C24N250.3°0.0°
C23N27N26N250.3°0.5°
N27C23C22H530.3°0.1°
C24N25N26H54180.0°179.9°
C24N25N26N270.1°0.5°
N25C24C21H522.1°0.0°
N27N26N25H54179.9°179.6°
N29C28C31C305.7°0.2°
C28N29C33C322.5°0.1°
C28N29C33C34179.4°180.0°
N29C28C31H55174.3°179.8°
C31C28N29C335.1°0.2°
C28C31C30C323.8°0.0°
C28C31C30H55180.0°180.0°
C28C31C30O38177.1°179.8°
N29C33C32C300.6°0.3°
N29C33C32C34178.2°179.9°
N29C33C32C37178.7°180.0°
N29C33C34C35179.2°179.9°
N29C33C34H560.8°0.0°
C32C30C31O38179.1°179.8°
C30C32C33C37179.3°179.7°
C30C32C33C34178.8°179.8°
C30C32C37C36179.2°179.8°
C32C30O38C39160.3°180.0°
C32C30C31H55176.2°180.0°
C30C32C37H590.8°0.0°
C31C30C32C331.4°0.2°
C31C30C32C37177.9°180.0°
C31C30O38C3920.5°0.2°
O38C30C32C33179.5°180.0°
O38C30C32C371.2°0.3°
C30O38C39C40164.8°180.0°
O38C30C31H552.9°0.2°
C30O38C39H6175.7°60.0°
C30O38C39H6045.2°60.0°
C32C33C34C351.1°0.0°
C33C32C37C361.5°0.0°
C32C33C34H56179.0°180.0°
C33C32C37H59178.5°179.7°
C37C32C33C340.5°0.0°
C32C37C36C352.8°0.0°
C32C37C36H59180.0°179.8°
C32C37C36H58177.2°179.9°
C33C34C35H56180.0°180.0°
C33C34C35C360.3°0.1°
C33C34C35H57179.7°180.0°
C34C35C36H57180.0°180.0°
C34C35C36C372.3°0.1°
C34C35C36H58177.7°180.0°
C35C36C37H58180.0°179.9°
C36C35C34H56179.7°180.0°
C35C36C37H59177.1°179.8°
C37C36C35H57177.7°180.0°
O38C39C40H61119.6°120.0°
O38C39C40H60119.6°120.0°
O38C39C40O4174.8°65.0°
O38C39H61H60121.3°119.9°
O38C39C40H62164.4°175.0°
O38C39C40H6346.0°55.0°
C39C40O41H62120.8°120.0°
C39C40O41H63120.8°119.9°
C39C40O41C421.5°180.0°
C40C39H61H60121.3°120.1°
C39C40H62H63117.4°120.0°
O41C40C39H6144.7°55.0°
O41C40C39H60165.6°175.0°
O41C40H62H63117.5°120.0°
C40O41C42H64180.0°179.9°
C40O41C42H6660.0°60.0°
C40O41C42H6560.0°60.0°
C42O41C40H62119.3°60.0°
C42O41C40H63122.3°60.1°
O41C42H64H66120.0°120.0°
O41C42H64H65120.0°120.1°
O41C42H66H65120.0°120.0°
H44C2C3H1291.0°84.7°
H43C2C3H1229.9°36.6°
H12C3C4H1111.7°25.3°
H12C3C6H14134.5°148.3°
H11C4C5H455.7°6.5°
H11C4C5H46115.3°127.2°
H11C4C7H13113.3°98.1°
H14C6C7H1310.0°25.4°
H14C6C8H4841.8°37.1°
H14C6C8H4781.3°84.3°
H13C7C10H4999.8°126.8°
H13C7C10H5021.9°6.0°
H51C20C21H522.9°0.0°
H56C34C35H570.3°0.0°
H57C35C36H582.3°0.0°
H58C36C37H592.8°0.3°
H61C39C40H6276.1°65.0°
H61C39C40H63165.6°175.0°
H60C39C40H6244.8°55.0°
H60C39C40H6373.6°65.0°
H64C42H66H65120.0°120.0°

250835

PDB entries from 2026-03-18

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