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Y3U

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C3UN3sing1.47Å1.47Å
O2C2doub1.22Å1.22Å
N3C2sing1.35Å1.39Å
N3C4sing1.35Å1.40Å
C2N1sing1.35Å1.39Å
O4C4doub1.22Å1.23Å
C4C5sing1.42Å1.45Å
N1C1'sing1.46Å1.49Å
N1C6sing1.37Å1.38Å
C1'O4'sing1.44Å1.41Å
C1'C2'sing1.54Å1.52Å
O4'C4'sing1.44Å1.45Å
C5C6doub1.35Å1.35Å
O3'C3'sing1.43Å1.43Å
C4'C3'sing1.55Å1.54Å
C4'C5'sing1.53Å1.51Å
O2'C2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.53Å
C5'O5'sing1.43Å1.47Å
O5'SBIsing1.52Å1.59Å
CE1CD1doub1.38Å1.39ÅAromatic
CE1CZsing1.39Å1.39ÅAromatic
CD1CGsing1.38Å1.39ÅAromatic
SBINATsing1.66Å1.59Å
SBIOAEdoub1.42Å1.42Å
SBIOADdoub1.42Å1.42Å
NATCsing1.35Å1.37Å
OHCZsing1.36Å1.36Å
CZCE2doub1.39Å1.39ÅAromatic
CGCBsing1.51Å1.51Å
CGCD2doub1.38Å1.39ÅAromatic
CBCAsing1.53Å1.54Å
CACsing1.51Å1.50Å
CANsing1.47Å1.46Å
COdoub1.21Å1.23Å
CE2CD2sing1.38Å1.39ÅAromatic
C3UH1sing1.09Å1.10Å
C3UH2sing1.09Å1.10Å
C3UH3sing1.09Å1.10Å
C5H4sing1.08Å1.08Å
C6H5sing1.08Å1.08Å
C1'H6sing1.09Å1.10Å
C4'H7sing1.09Å1.10Å
C5'H8sing1.09Å1.10Å
C5'H9sing1.09Å1.10Å
NATH10sing0.97Å1.00Å
CAH11sing1.09Å1.10Å
NH12sing1.01Å1.00Å
NH13sing1.01Å1.00Å
CBH15sing1.09Å1.10Å
CBH16sing1.09Å1.10Å
CD1H17sing1.08Å1.08Å
CE1H18sing1.08Å1.08Å
OHH19sing0.97Å0.95Å
CE2H20sing1.08Å1.08Å
CD2H21sing1.08Å1.08Å
C3'H22sing1.09Å1.10Å
O3'H23sing0.97Å0.95Å
C2'H24sing1.09Å1.10Å
O2'H25sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C3UN3C2117.2°119.9°
C3UN3C4118.4°119.9°
N3C3UH1109.5°109.5°
N3C3UH2109.5°109.5°
N3C3UH3109.5°109.4°
O2C2N3121.0°119.5°
O2C2N1123.2°119.5°
C2N3C4124.5°120.2°
N3C2N1115.8°121.0°
N3C4O4119.4°120.3°
N3C4C5115.7°119.4°
C2N1C1'115.5°119.7°
C2N1C6122.7°120.6°
O4C4C5124.9°120.3°
C4C5C6120.5°119.1°
C4C5H4119.8°120.5°
C1'N1C6121.7°119.7°
N1C1'O4'110.4°110.4°
N1C1'C2'117.1°110.4°
N1C1'H6108.1°110.3°
N1C6C5120.8°119.7°
N1C6H5119.6°120.2°
O4'C1'C2'104.2°104.8°
C1'O4'C4'107.2°105.3°
O4'C1'H6109.1°110.3°
C1'C2'O2'111.3°110.6°
C1'C2'C3'98.9°104.1°
C2'C1'H6107.7°110.4°
C1'C2'H24110.8°110.5°
O4'C4'C3'106.0°104.8°
O4'C4'C5'110.0°110.4°
O4'C4'H7109.5°110.4°
C6C5H4119.8°120.4°
C5C6H5119.6°120.1°
O3'C3'C4'111.0°110.5°
O3'C3'C2'110.5°110.6°
O3'C3'H22111.9°110.5°
C3'O3'H23109.5°114.0°
C3'C4'C5'114.3°110.3°
C4'C3'C2'102.4°104.0°
C3'C4'H7108.3°110.4°
C4'C3'H22110.3°110.5°
C4'C5'O5'107.0°109.5°
C5'C4'H7108.7°110.4°
C4'C5'H8110.1°109.5°
C4'C5'H9110.1°109.5°
O2'C2'C3'112.2°110.5°
O2'C2'H24112.4°110.5°
C2'O2'H25109.5°114.0°
C2'C3'H22110.4°110.5°
C3'C2'H24110.6°110.5°
C5'O5'SBI119.1°114.0°
O5'C5'H8110.1°109.4°
O5'C5'H9110.1°109.4°
O5'SBINAT103.3°107.2°
O5'SBIOAE105.4°106.4°
O5'SBIOAD107.1°106.4°
CD1CE1CZ119.8°119.9°
CE1CD1CG120.9°120.0°
CE1CD1H17119.5°120.0°
CD1CE1H18120.1°120.0°
CE1CZOH119.6°120.0°
CE1CZCE2119.8°119.9°
CZCE1H18120.1°120.0°
CD1CGCB120.7°119.9°
CD1CGCD2118.6°120.1°
CGCD1H17119.5°120.0°
NATSBIOAE105.9°106.4°
NATSBIOAD112.6°106.4°
SBINATC128.2°120.0°
SBINATH10115.9°120.0°
OAESBIOAD121.0°123.1°
NATCCA114.3°120.0°
NATCO121.6°120.0°
CNATH10115.9°120.0°
OHCZCE2120.6°120.1°
CZOHH19109.5°114.0°
CZCE2CD2119.8°120.0°
CZCE2H20120.1°120.0°
CBCGCD2120.8°119.9°
CGCBCA113.2°109.5°
CGCBH15108.5°109.5°
CGCBH16108.5°109.5°
CGCD2CE2121.0°120.1°
CGCD2H21119.5°120.0°
CBCAC100.0°109.5°
CBCAN110.7°109.4°
CBCAH11111.0°109.5°
CACBH15108.5°109.5°
CACBH16108.5°109.5°
CCAN110.9°109.5°
CACO124.0°120.0°
CCAH11111.5°109.5°
NCAH11112.1°109.5°
CANH12109.5°111.0°
CANH13109.5°111.0°
CD2CE2H20120.1°120.0°
CE2CD2H21119.5°119.9°
H1C3UH2109.5°109.6°
H1C3UH3109.5°109.5°
H2C3UH3109.5°109.4°
H8C5'H9109.5°109.5°
H12NH13109.5°111.0°
H15CBH16109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C3UN3C2O20.2°0.0°
C3UN3C2C4179.7°179.7°
C3UN3C2N1179.6°179.8°
C3UN3C4O40.6°0.0°
C3UN3C4C5179.1°179.9°
N3C3UH1H2120.0°120.0°
N3C3UH1H3120.0°119.9°
N3C3UH2H3120.0°119.9°
O2C2N3N1179.4°179.8°
O2C2N3C4179.4°179.8°
O2C2N1C1'3.0°0.0°
O2C2N1C6178.5°179.8°
C2N3C4O4179.7°179.8°
C2N3C4C50.6°0.2°
N3C2N1C1'177.7°179.8°
N3C2N1C60.9°0.5°
C2N3C3UH1180.0°90.0°
C2N3C3UH260.0°149.9°
C2N3C3UH360.0°30.0°
C4N3C2N10.1°0.5°
N3C4O4C5179.7°180.0°
N3C4C5C60.2°0.0°
C4N3C3UH10.3°89.7°
C4N3C3UH2120.3°30.3°
C4N3C3UH3119.7°150.2°
N3C4C5H4179.8°180.0°
C2N1C1'C6178.5°179.7°
C2N1C1'O4'117.5°126.2°
C2N1C1'C2'123.5°118.4°
C2N1C6C51.3°0.2°
C2N1C6H5178.7°179.8°
C2N1C1'H61.7°3.9°
O4C4C5C6179.8°180.0°
O4C4C5H40.2°0.0°
C4C5C6N10.7°0.0°
C4C5C6H4180.0°180.0°
C4C5C6H5179.3°180.0°
N1C1'O4'C2'126.5°118.9°
N1C1'O4'H6118.6°122.2°
N1C1'C2'H6122.0°122.3°
N1C1'O4'C4'163.3°159.4°
C1'N1C6C5177.2°180.0°
N1C1'C2'O2'73.5°98.5°
N1C1'C2'C3'168.4°142.8°
C1'N1C6H52.9°0.0°
N1C1'C2'H2452.3°24.2°
C6N1C1'O4'63.9°53.6°
C6N1C1'C2'55.0°61.9°
N1C6C5H5180.0°180.0°
N1C6C5H4179.3°180.0°
C6N1C1'H6176.8°175.8°
O4'C1'C2'H6115.8°118.8°
C1'O4'C4'C3'11.6°40.5°
C1'O4'C4'C5'135.6°159.3°
O4'C1'C2'O2'164.3°142.6°
O4'C1'C2'C3'46.2°23.9°
C1'O4'C4'H7105.0°78.3°
O4'C1'C2'H2469.9°94.7°
C2'C1'O4'C4'36.8°40.5°
C1'C2'C3'O3'80.9°118.7°
C1'C2'C3'C4'37.3°0.0°
C1'C2'O2'C3'109.8°114.7°
C1'C2'O2'H24124.9°122.7°
C1'C2'C3'H24116.3°118.7°
C1'C2'C3'H22154.8°118.6°
C1'C2'O2'H25180.0°179.9°
O4'C4'C3'O3'100.5°142.7°
O4'C4'C3'C5'121.3°118.8°
O4'C4'C3'H7117.4°118.8°
O4'C4'C5'H7119.9°122.3°
O4'C4'C3'C2'17.5°24.0°
O4'C4'C5'O5'64.8°66.5°
C4'O4'C1'H678.0°78.4°
O4'C4'C5'H854.8°173.6°
O4'C4'C5'H9175.6°53.5°
O4'C4'C3'H22134.9°94.6°
O3'C3'C4'C2'117.9°118.7°
O3'C3'C4'H22124.6°122.7°
O3'C3'C4'C5'138.3°98.5°
O3'C3'C2'O2'36.5°0.0°
O3'C3'C2'H22124.3°122.7°
O3'C3'C4'H717.0°23.9°
O3'C3'C2'H24162.8°122.6°
C3'C4'C5'H7121.1°122.3°
C4'C3'C2'O2'154.8°118.7°
C4'C3'C2'H22117.4°118.6°
C3'C4'C5'O5'54.2°178.2°
C3'C4'C5'H8173.8°58.2°
C3'C4'C5'H965.4°61.9°
C4'C3'O3'H23180.0°180.0°
C4'C3'C2'H2478.9°118.7°
C5'C4'C3'C2'103.8°142.8°
C4'C5'O5'H8119.6°120.0°
C4'C5'O5'H9119.6°120.0°
C4'C5'O5'SBI135.7°180.0°
C4'C5'H8H9121.1°120.1°
C5'C4'C3'H2213.7°24.2°
O2'C2'C3'H24126.3°122.7°
O2'C2'C1'H648.5°23.8°
O2'C2'C3'H2287.8°122.7°
C3'C2'C1'H669.6°94.9°
C2'C3'C4'H7134.9°94.9°
C2'C3'O3'H2367.1°65.3°
C3'C2'O2'H2570.2°65.3°
C5'O5'SBINAT54.0°75.0°
C5'O5'SBIOAE56.9°38.5°
C5'O5'SBIOAD173.0°171.5°
O5'C5'C4'H7175.3°55.9°
O5'C5'H8H9121.1°120.0°
O5'SBINATOAE110.5°113.6°
O5'SBINATOAD115.1°113.5°
O5'SBIOAEOAD121.4°123.0°
O5'SBINATC163.3°65.0°
SBIO5'C5'H8104.7°60.0°
SBIO5'C5'H916.1°60.0°
O5'SBINATH1016.7°115.0°
CD1CE1CZH18180.0°180.0°
CE1CD1CGH17180.0°180.0°
CD1CE1CZOH178.9°180.0°
CD1CE1CZCE20.9°0.0°
CE1CD1CGCB179.2°180.0°
CE1CD1CGCD21.3°0.3°
CZCE1CD1CG1.0°0.0°
CE1CZOHCE2179.8°180.0°
CE1CZCE2CD21.2°0.3°
CZCE1CD1H17179.0°180.0°
CE1CZOHH19180.0°90.0°
CE1CZCE2H20178.8°180.0°
CD1CGCBCD2179.5°179.7°
CD1CGCBCA61.1°89.7°
CD1CGCD2CE21.6°0.5°
CD1CGCBH1559.4°150.3°
CD1CGCBH16178.3°30.3°
CGCD1CE1H18179.1°179.9°
CD1CGCD2H21178.4°179.7°
NATSBIOAEOAD129.6°122.9°
SBINATCH10180.0°180.0°
SBINATCCA174.1°180.0°
SBINATCO2.1°0.0°
OAESBINATC86.1°178.6°
OAESBINATH1093.9°1.4°
OADSBINATC48.2°48.5°
OADSBINATH10131.8°131.4°
NATCCACB77.0°80.0°
NATCCAO176.1°180.0°
NATCCAN166.2°160.0°
NATCCAH1140.4°39.9°
OHCZCE2CD2178.6°179.7°
OHCZCE1H181.1°0.0°
OHCZCE2H201.4°0.0°
CZCE2CD2CG1.6°0.5°
CZCE2CD2H20180.0°179.7°
CE2CZCE1H18179.1°179.9°
CE2CZOHH190.2°90.0°
CZCE2CD2H21178.4°179.7°
CGCBCAH15120.5°120.1°
CGCBCAH16120.6°120.0°
CGCBCAC171.9°175.0°
CGCBCAN54.9°65.0°
CBCGCD2CE2178.9°179.8°
CGCBCAH1170.2°55.0°
CGCBH15H16118.3°120.0°
CBCGCD1H170.8°0.1°
CBCGCD2H211.1°0.0°
CD2CGCBCA118.3°90.0°
CGCD2CE2H21180.0°179.7°
CD2CGCBH15121.1°30.0°
CD2CGCBH162.2°150.0°
CD2CGCD1H17178.7°179.7°
CGCD2CE2H20178.4°179.7°
CBCACN116.8°120.0°
CBCACH11117.4°120.0°
CBCANH11124.5°120.0°
CBCACO99.1°100.0°
CBCANH12180.0°176.1°
CBCANH1360.0°60.0°
CACBH15H16118.3°120.0°
CCANH11125.4°120.0°
CACNATH105.9°0.0°
CCANH1269.9°64.0°
CCANH1350.1°60.0°
CCACBH1567.5°64.9°
CCACBH1651.3°55.0°
NCACO17.7°19.9°
CANH12H13120.0°123.9°
NCACBH15175.4°55.0°
NCACBH1665.7°175.0°
OCNATH10177.9°180.0°
OCCAH11143.5°140.0°
H1C3UH2H3120.0°120.1°
H4C5C6H50.7°0.0°
H6C1'C2'H24174.3°146.5°
H7C4'C5'H865.1°64.1°
H7C4'C5'H955.7°175.9°
H7C4'C3'H22107.6°146.5°
H11CANH1255.5°56.1°
H11CANH13175.5°180.0°
H11CACBH1550.3°175.1°
H11CACBH16169.2°65.0°
H17CD1CE1H180.9°0.0°
H20CE2CD2H211.6°0.0°
H22C3'O3'H2356.3°57.3°
H22C3'C2'H2438.5°0.0°
H24C2'O2'H2555.1°57.3°

222415

PDB entries from 2024-07-10

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