Y3L
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| NAG | CAM | sing | 1.35Å | 1.35Å | Aromatic |
| NAG | CAL | doub | 1.29Å | 1.33Å | Aromatic |
| CAM | CAE | sing | 1.41Å | 1.34Å | Aromatic |
| CAM | CAN | doub | 1.40Å | 1.36Å | Aromatic |
| CAE | CAD | doub | 1.37Å | 1.39Å | Aromatic |
| CAD | CAK | sing | 1.39Å | 1.39Å | Aromatic |
| CAK | CLAC | sing | 1.74Å | 1.82Å | |
| CAK | CAF | doub | 1.38Å | 1.39Å | Aromatic |
| CAF | CAN | sing | 1.39Å | 1.34Å | Aromatic |
| CAN | SAI | sing | 1.76Å | 1.66Å | Aromatic |
| SAI | CAL | sing | 1.76Å | 1.70Å | Aromatic |
| CAL | NAH | sing | 1.39Å | 1.33Å | |
| NAH | CAJ | sing | 1.35Å | 1.36Å | |
| CAJ | OAB | doub | 1.21Å | 1.23Å | |
| CAJ | CAA | sing | 1.51Å | 1.54Å | |
| NAH | HAH | sing | 0.97Å | 1.00Å | |
| CAE | HAE | sing | 1.08Å | 1.08Å | |
| CAD | HAD | sing | 1.08Å | 1.08Å | |
| CAF | HAF | sing | 1.08Å | 1.08Å | |
| CAA | HAA1 | sing | 1.09Å | 1.10Å | |
| CAA | HAA2 | sing | 1.09Å | 1.10Å | |
| CAA | HAA3 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CAM | NAG | CAL | 114.4° | 117.9° |
| NAG | CAM | CAE | 126.7° | 128.8° |
| NAG | CAM | CAN | 114.1° | 112.9° |
| NAG | CAL | SAI | 108.7° | 110.4° |
| NAG | CAL | NAH | 120.2° | 124.8° |
| CAE | CAM | CAN | 119.2° | 118.4° |
| CAM | CAE | CAD | 121.2° | 120.5° |
| CAM | CAE | HAE | 119.4° | 119.8° |
| CAM | CAN | CAF | 122.0° | 120.4° |
| CAM | CAN | SAI | 109.0° | 108.4° |
| CAE | CAD | CAK | 119.3° | 120.6° |
| CAD | CAE | HAE | 119.4° | 119.7° |
| CAE | CAD | HAD | 120.4° | 119.7° |
| CAD | CAK | CLAC | 122.1° | 120.0° |
| CAD | CAK | CAF | 117.8° | 120.0° |
| CAK | CAD | HAD | 120.4° | 119.7° |
| CLAC | CAK | CAF | 120.2° | 120.0° |
| CAK | CAF | CAN | 120.5° | 120.2° |
| CAK | CAF | HAF | 119.7° | 119.9° |
| CAF | CAN | SAI | 128.9° | 131.2° |
| CAN | CAF | HAF | 119.7° | 119.9° |
| CAN | SAI | CAL | 93.8° | 90.4° |
| SAI | CAL | NAH | 131.1° | 124.8° |
| CAL | NAH | CAJ | 125.7° | 120.0° |
| CAL | NAH | HAH | 117.1° | 120.0° |
| NAH | CAJ | OAB | 120.2° | 120.0° |
| NAH | CAJ | CAA | 121.2° | 120.0° |
| CAJ | NAH | HAH | 117.2° | 120.0° |
| OAB | CAJ | CAA | 118.6° | 120.0° |
| CAJ | CAA | HAA1 | 109.5° | 109.5° |
| CAJ | CAA | HAA2 | 109.4° | 109.4° |
| CAJ | CAA | HAA3 | 109.5° | 109.4° |
| HAA1 | CAA | HAA2 | 109.4° | 109.5° |
| HAA1 | CAA | HAA3 | 109.5° | 109.5° |
| HAA2 | CAA | HAA3 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| NAG | CAM | CAE | CAN | 178.8° | 179.9° |
| NAG | CAM | CAE | CAD | 178.9° | 179.9° |
| NAG | CAM | CAN | CAF | 179.0° | 180.0° |
| NAG | CAM | CAN | SAI | 1.0° | 0.0° |
| CAM | NAG | CAL | SAI | 0.3° | 0.0° |
| CAM | NAG | CAL | NAH | 179.0° | 179.9° |
| NAG | CAM | CAE | HAE | 1.1° | 0.1° |
| CAL | NAG | CAM | CAE | 179.8° | 180.0° |
| CAL | NAG | CAM | CAN | 0.9° | 0.0° |
| NAG | CAL | SAI | CAN | 0.2° | 0.0° |
| NAG | CAL | SAI | NAH | 179.3° | 179.9° |
| NAG | CAL | NAH | CAJ | 154.8° | 180.0° |
| NAG | CAL | NAH | HAH | 25.1° | 0.0° |
| CAM | CAE | CAD | HAE | 180.0° | 180.0° |
| CAM | CAE | CAD | CAK | 0.0° | 0.0° |
| CAE | CAM | CAN | CAF | 0.0° | 0.0° |
| CAE | CAM | CAN | SAI | 179.9° | 180.0° |
| CAM | CAE | CAD | HAD | 180.0° | 180.0° |
| CAN | CAM | CAE | CAD | 0.0° | 0.0° |
| CAM | CAN | CAF | CAK | 0.1° | 0.0° |
| CAM | CAN | CAF | SAI | 179.9° | 180.0° |
| CAM | CAN | SAI | CAL | 0.6° | 0.0° |
| CAN | CAM | CAE | HAE | 180.0° | 180.0° |
| CAM | CAN | CAF | HAF | 179.9° | 179.9° |
| CAE | CAD | CAK | HAD | 180.0° | 180.0° |
| CAE | CAD | CAK | CLAC | 180.0° | 180.0° |
| CAE | CAD | CAK | CAF | 0.1° | 0.0° |
| CAD | CAK | CLAC | CAF | 179.8° | 180.0° |
| CAD | CAK | CAF | CAN | 0.2° | 0.0° |
| CAK | CAD | CAE | HAE | 179.9° | 180.0° |
| CAD | CAK | CAF | HAF | 179.8° | 179.9° |
| CLAC | CAK | CAF | CAN | 180.0° | 180.0° |
| CLAC | CAK | CAD | HAD | 0.0° | 0.0° |
| CLAC | CAK | CAF | HAF | 0.0° | 0.1° |
| CAK | CAF | CAN | HAF | 180.0° | 179.9° |
| CAK | CAF | CAN | SAI | 180.0° | 180.0° |
| CAF | CAK | CAD | HAD | 179.9° | 180.0° |
| CAF | CAN | SAI | CAL | 179.3° | 180.0° |
| CAN | SAI | CAL | NAH | 179.5° | 179.9° |
| SAI | CAN | CAF | HAF | 0.0° | 0.1° |
| SAI | CAL | NAH | CAJ | 25.9° | 0.1° |
| SAI | CAL | NAH | HAH | 154.1° | 179.9° |
| CAL | NAH | CAJ | HAH | 180.0° | 180.0° |
| CAL | NAH | CAJ | OAB | 176.1° | 0.0° |
| CAL | NAH | CAJ | CAA | 2.3° | 180.0° |
| NAH | CAJ | OAB | CAA | 178.5° | 180.0° |
| NAH | CAJ | CAA | HAA1 | 178.4° | 0.0° |
| NAH | CAJ | CAA | HAA2 | 58.4° | 120.0° |
| NAH | CAJ | CAA | HAA3 | 61.5° | 120.0° |
| OAB | CAJ | NAH | HAH | 3.8° | 180.0° |
| OAB | CAJ | CAA | HAA1 | 0.0° | 180.0° |
| OAB | CAJ | CAA | HAA2 | 120.0° | 60.0° |
| OAB | CAJ | CAA | HAA3 | 120.0° | 60.0° |
| CAA | CAJ | NAH | HAH | 177.7° | 0.0° |
| CAJ | CAA | HAA1 | HAA2 | 120.0° | 120.0° |
| CAJ | CAA | HAA1 | HAA3 | 120.0° | 120.0° |
| CAJ | CAA | HAA2 | HAA3 | 120.0° | 120.0° |
| HAE | CAE | CAD | HAD | 0.1° | 0.0° |
| HAA1 | CAA | HAA2 | HAA3 | 120.0° | 120.0° |
