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SummaryGeometryRelated PDB entries

Y3D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O25C23doub1.21Å1.25Å
O24C23sing1.34Å1.26Å
C23C19sing1.51Å1.52Å
C19C20sing1.55Å1.54Å
C19C18sing1.55Å1.52Å
C20C21sing1.52Å1.54Å
O12P11doub1.48Å1.47Å
C18C17sing1.54Å1.51Å
O13P11sing1.61Å1.63Å
P11O14sing1.61Å1.47Å
P11O10sing1.61Å1.65Å
C21C17sing1.51Å1.52Å
C21O22doub1.21Å1.19Å
C17N16sing1.46Å1.26Å
O10C09sing1.43Å1.40Å
C09C04sing1.51Å1.53Å
N16C15doub1.29Å1.46Å
C15C05sing1.48Å1.33Å
C05C04doub1.40Å1.38ÅAromatic
C05C06sing1.40Å1.38ÅAromatic
C04C03sing1.38Å1.39ÅAromatic
C06O08sing1.36Å1.40Å
C06C01doub1.39Å1.39ÅAromatic
C03N02doub1.32Å1.33ÅAromatic
N02C01sing1.32Å1.33ÅAromatic
C01C07sing1.51Å1.53Å
C15H1sing1.08Å1.08Å
C17H2sing1.09Å1.10Å
C18H3sing1.09Å1.10Å
C18H4sing1.09Å1.10Å
C19H5sing1.09Å1.10Å
C20H6sing1.09Å1.10Å
C20H7sing1.09Å1.10Å
C03H8sing1.08Å1.08Å
C07H9sing1.09Å1.10Å
C07H10sing1.09Å1.10Å
C07H11sing1.09Å1.10Å
C09H12sing1.09Å1.10Å
C09H13sing1.09Å1.10Å
O08H14sing0.97Å0.95Å
O13H15sing0.97Å0.95Å
O14H16sing0.97Å0.95Å
O24H17sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O25C23O24120.8°120.0°
O25C23C19120.0°120.0°
O24C23C19119.2°120.0°
C23O24H17109.5°117.1°
C23C19C20123.7°110.8°
C23C19C18122.6°110.8°
C23C19H598.1°110.9°
C20C19C18107.7°102.3°
C19C20C21106.0°104.4°
C20C19H598.0°110.9°
C19C20H6110.3°110.4°
C19C20H7110.4°110.5°
C19C18C17108.6°103.7°
C19C18H3109.7°110.6°
C19C18H4109.7°110.7°
C18C19H598.1°110.8°
C20C21C17108.5°107.3°
C20C21O22126.0°126.3°
C21C20H6110.3°110.4°
C21C20H7110.3°110.5°
O12P11O13110.4°109.5°
O12P11O14104.7°109.5°
O12P11O10110.3°109.4°
C18C17C21107.6°106.9°
C18C17N16125.9°110.0°
C18C17H294.7°109.9°
C17C18H3109.7°110.6°
C17C18H4109.7°110.6°
O13P11O14113.2°109.5°
O13P11O10108.6°109.4°
P11O13H15109.5°114.0°
O14P11O10109.6°109.5°
P11O14H16109.5°114.1°
P11O10C09115.9°123.1°
C17C21O22125.5°126.4°
C21C17N16124.2°110.1°
C21C17H294.7°110.0°
C17N16C15122.2°120.1°
N16C17H295.6°110.0°
O10C09C04111.7°109.5°
O10C09H12108.9°109.5°
O10C09H13108.9°109.5°
C09C04C05119.8°120.5°
C09C04C03120.4°120.4°
C04C09H12108.9°109.5°
C04C09H13108.9°109.5°
N16C15C05118.0°120.0°
N16C15H1121.0°120.0°
C15C05C04120.1°121.0°
C15C05C06120.7°121.0°
C05C15H1121.0°120.0°
C04C05C06119.2°118.0°
C05C04C03119.8°119.1°
C05C06O08121.6°120.5°
C05C06C01118.2°118.9°
C04C03N02120.1°121.0°
C04C03H8119.9°119.4°
O08C06C01120.2°120.6°
C06O08H14109.5°114.0°
C06C01N02121.7°120.8°
C06C01C07118.9°119.6°
C03N02C01120.9°122.2°
N02C03H8119.9°119.6°
N02C01C07119.4°119.6°
C01C07H9109.5°109.5°
C01C07H10109.5°109.5°
C01C07H11109.5°109.5°
H3C18H4109.5°110.5°
H6C20H7109.5°110.5°
H9C07H10109.4°109.5°
H9C07H11109.5°109.4°
H10C07H11109.4°109.4°
H12C09H13109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O25C23O24C19179.7°180.0°
O25C23C19C2074.6°118.5°
O25C23C19C18135.8°5.7°
O25C23C19H530.7°117.9°
O25C23O24H170.0°0.0°
O24C23C19C20105.1°61.5°
O24C23C19C1844.5°174.3°
O24C23C19H5149.6°62.1°
C23C19C20C18153.4°118.2°
C23C19C20H5105.4°123.6°
C23C19C18H5105.1°123.6°
C23C19C20C21140.4°155.9°
C23C19C18C17142.8°155.3°
C23C19C18H323.0°86.1°
C23C19C18H497.3°36.6°
C23C19C20H6100.2°85.5°
C23C19C20H720.9°37.0°
C19C23O24H17179.7°180.0°
C20C19C18H5101.1°118.2°
C19C20C21H6119.4°118.7°
C19C20C21H7119.4°118.8°
C20C19C18C1710.9°37.1°
C19C20C21C1710.5°23.9°
C19C20C21O22169.2°156.2°
C20C19C18H3130.8°155.7°
C20C19C18H4108.9°81.6°
C19C20H6H7121.7°122.5°
C18C19C20C2113.0°37.7°
C19C18C17H3119.9°118.6°
C19C18C17H4119.9°118.7°
C19C18C17C214.3°23.1°
C19C18C17N16158.8°142.5°
C19C18C17H2100.8°96.3°
C19C18H3H4120.4°122.9°
C18C19C20H6106.4°156.4°
C18C19C20H7132.5°81.1°
C20C21C17C183.9°0.5°
C20C21C17O22179.7°179.9°
C20C21C17N16167.4°119.0°
C20C21C17H292.5°119.8°
C21C20C19H5114.3°80.5°
C21C20H6H7121.6°122.5°
O12P11O13O14117.0°120.0°
O12P11O13O10121.0°119.9°
O12P11O14O10118.3°120.0°
O12P11O10C0968.0°55.0°
O12P11O13H150.0°180.0°
O12P11O14H160.0°60.0°
C18C17C21N16163.5°119.4°
C18C17C21H296.5°119.3°
C18C17C21O22175.7°179.7°
C18C17N16H2100.0°121.2°
C18C17N16C1512.4°120.6°
C17C18H3H4120.4°122.8°
C17C18C19H5112.1°81.2°
O13P11O14O10121.4°120.0°
O13P11O10C0953.0°65.0°
O13P11O14H16120.3°60.0°
O14P11O10C09177.2°175.0°
O14P11O13H15117.1°60.0°
P11O10C09C04159.3°180.0°
P11O10C09H1239.0°60.0°
P11O10C09H1380.4°60.0°
O10P11O13H15121.0°60.1°
O10P11O14H16118.4°180.0°
C21C17N16H299.6°121.3°
C21C17N16C15148.0°121.9°
C21C17C18H3124.2°141.7°
C21C17C18H4115.5°95.6°
C17C21C20H6109.0°142.6°
C17C21C20H7129.9°94.9°
O22C21C17N1612.2°60.9°
O22C21C17H287.8°60.4°
O22C21C20H671.4°37.6°
O22C21C20H749.7°85.0°
C17N16C15C05168.8°180.0°
C17N16C15H111.2°0.2°
N16C17C18H338.9°98.9°
N16C17C18H481.4°23.8°
O10C09C04H12120.3°120.1°
O10C09C04H13120.3°120.0°
O10C09C04C0581.7°179.8°
O10C09C04C0399.0°0.0°
O10C09H12H13119.0°120.0°
C09C04C05C150.6°0.3°
C09C04C05C03179.2°179.8°
C09C04C05C06179.0°180.0°
C09C04C03N02178.6°180.0°
C09C04C03H81.3°0.1°
C04C09H12H13119.0°120.0°
N16C15C05H1180.0°179.8°
N16C15C05C04164.7°179.7°
N16C15C05C0614.8°0.0°
C15N16C17H2112.4°0.7°
C15C05C04C06179.6°179.7°
C15C05C04C03179.8°179.9°
C15C05C06O080.1°0.3°
C15C05C06C01179.8°179.7°
C04C05C06O08179.6°180.0°
C04C05C06C010.2°0.0°
C05C04C03N020.6°0.3°
C04C05C15H115.3°0.1°
C05C04C03H8179.4°179.7°
C05C04C09H1238.6°59.7°
C05C04C09H13157.9°60.2°
C06C05C04C030.2°0.2°
C05C06O08C01179.8°180.0°
C05C06C01N020.5°0.2°
C05C06C01C07179.4°180.0°
C06C05C15H1165.2°179.8°
C05C06O08H14180.0°90.0°
C04C03N02H8180.0°180.0°
C04C03N02C010.9°0.0°
C03C04C09H12140.6°120.0°
C03C04C09H1321.3°120.0°
O08C06C01N02179.3°179.8°
O08C06C01C070.8°0.0°
C06C01N02C030.9°0.2°
C06C01N02C07179.9°179.8°
C06C01C07H9179.9°90.0°
C06C01C07H1059.9°150.0°
C06C01C07H1160.0°30.0°
C01C06O08H140.1°89.9°
C03N02C01C07179.0°180.0°
C01N02C03H8179.1°179.9°
N02C01C07H90.0°89.8°
N02C01C07H10120.0°30.2°
N02C01C07H11120.0°150.2°
C01C07H9H10120.0°120.1°
C01C07H9H11120.0°120.0°
C01C07H10H11120.0°120.1°
H2C17C18H3139.4°22.3°
H2C17C18H419.1°145.1°
H3C18C19H5128.0°37.5°
H4C18C19H57.8°160.2°
H5C19C20H65.1°38.2°
H5C19C20H7126.3°160.7°
H9C07H10H11120.0°119.9°

222415

PDB entries from 2024-07-10

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