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SummaryGeometryRelated PDB entries

Y2Q

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02doub1.40Å1.38ÅAromatic
C02C03sing1.36Å1.37ÅAromatic
C01C04sing1.39Å1.42ÅAromatic
C04C05doub1.40Å1.36ÅAromatic
C03C06doub1.39Å1.44ÅAromatic
C05C06sing1.41Å1.36ÅAromatic
C06N07sing1.37Å1.36ÅAromatic
N07N08sing1.40Å1.39ÅAromatic
C05N09sing1.35Å1.38ÅAromatic
N08N09doub1.29Å1.35ÅAromatic
C01C10sing1.48Å1.50Å
C10N11sing1.35Å1.49Å
C10O12doub1.22Å1.18Å
N11C13sing1.47Å1.58Å
N11C14sing1.48Å1.58Å
C14C15sing1.55Å1.59Å
C13C16sing1.54Å1.60Å
C15C16sing1.55Å1.57Å
C16C17sing1.54Å1.66Å
C17C18sing1.54Å1.57Å
C15C19sing1.54Å1.59Å
C18C19sing1.55Å1.67Å
C18S20sing1.81Å1.74Å
S20C21sing1.81Å1.71Å
C21C22sing1.53Å1.50Å
C22C23sing1.51Å1.51Å
C23C24doub1.38Å1.37ÅAromatic
C24C25sing1.38Å1.46ÅAromatic
C25C26doub1.38Å1.34ÅAromatic
C26C27sing1.38Å1.36ÅAromatic
C23C28sing1.38Å1.35ÅAromatic
C27C28doub1.38Å1.46ÅAromatic
S20O29doub1.42Å1.48Å
S20O30doub1.42Å1.47Å
C25CL33sing1.74Å1.74Å
C27CL34sing1.74Å1.69Å
C02H35sing1.08Å1.08Å
C04H37sing1.08Å1.08Å
C13H39sing1.09Å1.10Å
C13H40sing1.09Å1.10Å
C15H31sing1.09Å1.10Å
C16H32sing1.09Å1.10Å
C17H43sing1.09Å1.10Å
C17H44sing1.09Å1.10Å
C18H45sing1.09Å1.10Å
C19H47sing1.09Å1.10Å
C19H46sing1.09Å1.10Å
C21H49sing1.09Å1.10Å
C21H48sing1.09Å1.10Å
C22H50sing1.09Å1.10Å
C22H51sing1.09Å1.10Å
C24H52sing1.08Å1.08Å
C26H53sing1.08Å1.08Å
C28H54sing1.08Å1.08Å
C03H36sing1.08Å1.08Å
N07H38sing0.97Å1.00Å
C14H42sing1.09Å1.10Å
C14H41sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C02C03118.3°120.4°
C02C01C04121.5°120.3°
C02C01C10122.1°119.9°
C01C02H35120.9°119.8°
C02C03C06120.2°120.2°
C03C02H35120.9°119.8°
C02C03H36119.9°119.9°
C01C04C05120.1°119.6°
C04C01C10116.4°119.8°
C01C04H37120.0°120.3°
C04C05C06119.3°119.4°
C04C05N09131.5°133.1°
C05C04H37120.0°120.2°
C03C06C05120.7°120.2°
C03C06N07132.2°133.8°
C06C03H36119.9°119.9°
C05C06N07107.1°106.1°
C06C05N09109.2°107.6°
C06N07N08108.5°106.7°
C06N07H38125.8°126.6°
N07N08N09108.1°109.6°
N08N07H38125.8°126.7°
C05N09N08107.1°110.1°
C01C10N11121.2°120.0°
C01C10O12119.1°120.0°
N11C10O12119.7°120.0°
C10N11C13125.3°127.0°
C10N11C14126.3°127.0°
C13N11C14108.4°106.0°
N11C13C16105.0°107.2°
N11C13H39110.6°109.9°
N11C13H40110.6°110.0°
N11C14C15104.8°103.3°
N11C14H42110.6°110.6°
N11C14H41110.6°110.6°
C14C15C16107.6°102.9°
C14C15C19129.3°108.9°
C14C15H31102.9°113.6°
C15C14H42110.6°110.7°
C15C14H41110.6°110.6°
C13C16C15108.3°104.8°
C13C16C17129.7°108.8°
C16C13H39110.6°109.9°
C16C13H40110.6°109.9°
C13C16H32103.2°111.9°
C15C16C17106.5°106.5°
C16C15C19108.1°104.6°
C16C15H31103.0°113.1°
C15C16H32103.4°111.9°
C16C17C18102.9°106.7°
C17C16H32102.7°112.5°
C16C17H43111.1°110.0°
C16C17H44111.1°110.0°
C17C18C19103.8°104.2°
C17C18S20115.3°110.5°
C18C17H43111.1°110.0°
C18C17H44111.1°110.1°
C17C18H45109.1°110.5°
C15C19C1899.8°103.3°
C19C15H31102.8°112.9°
C15C19H47111.8°110.7°
C15C19H46111.8°110.6°
C19C18S20113.4°110.5°
C19C18H45107.8°110.5°
C18C19H47111.8°110.6°
C18C19H46111.8°110.7°
C18S20C21108.7°101.9°
C18S20O29111.2°108.6°
C18S20O30105.3°108.6°
S20C18H45107.1°110.5°
S20C21C22110.2°109.5°
C21S20O29108.6°108.6°
C21S20O30109.3°108.6°
S20C21H49109.3°109.5°
S20C21H48109.3°109.4°
C21C22C23104.9°109.4°
C22C21H49109.3°109.5°
C22C21H48109.3°109.5°
C21C22H50110.6°109.4°
C21C22H51110.6°109.5°
C22C23C24119.9°120.0°
C22C23C28119.7°120.0°
C23C22H50110.6°109.5°
C23C22H51110.6°109.5°
C23C24C25120.8°120.0°
C24C23C28120.4°120.0°
C23C24H52119.6°119.9°
C24C25C26119.6°120.0°
C24C25CL33120.3°120.0°
C25C24H52119.6°120.0°
C25C26C27118.6°120.0°
C26C25CL33120.1°120.0°
C25C26H53120.7°120.0°
C26C27C28123.3°120.0°
C26C27CL34119.1°120.0°
C27C26H53120.7°120.0°
C23C28C27117.4°120.0°
C23C28H54121.3°120.0°
C28C27CL34117.6°120.0°
C27C28H54121.3°120.0°
O29S20O30113.6°119.2°
H39C13H40109.5°109.9°
H43C17H44109.5°110.1°
H47C19H46109.5°110.7°
H49C21H48109.4°109.5°
H50C22H51109.5°109.5°
H42C14H41109.5°110.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C02C03H35180.0°180.0°
C02C01C04C10178.7°179.7°
C02C01C04C050.1°0.1°
C01C02C03C060.7°0.0°
C02C01C10N1153.5°24.1°
C02C01C10O12126.1°155.8°
C02C01C04H37179.9°180.0°
C01C02C03H36179.3°180.0°
C03C02C01C040.1°0.0°
C02C03C06H36180.0°180.0°
C02C03C06C051.3°0.0°
C02C03C06N07179.3°180.0°
C03C02C01C10178.6°179.7°
C01C04C05H37180.0°179.9°
C01C04C05C060.4°0.1°
C01C04C05N09179.8°180.0°
C04C01C10N11127.8°156.1°
C04C01C10O1252.6°23.9°
C04C01C02H35180.0°180.0°
C04C05C06C031.1°0.1°
C04C05C06N09179.8°179.9°
C04C05C06N07179.5°180.0°
C04C05N09N08179.8°180.0°
C05C04C01C10178.5°179.8°
C03C06C05N07178.4°180.0°
C03C06N07N08178.8°180.0°
C03C06C05N09179.1°180.0°
C06C03C02H35179.3°180.0°
C03C06N07H381.2°0.1°
C05C06N07N080.6°0.0°
C06C05N09N080.4°0.1°
C06C05C04H37179.6°180.0°
C05C06C03H36178.7°180.0°
C05C06N07H38179.4°180.0°
C06N07N08H38180.0°179.9°
N07C06C05N090.6°0.1°
C06N07N08N090.4°0.0°
N07C06C03H360.7°0.0°
N07N08N09C050.0°0.0°
N09C05C04H370.2°0.1°
N09N08N07H38179.7°180.0°
C01C10N11O12179.6°179.9°
C01C10N11C13179.2°5.9°
C01C10N11C140.3°174.1°
C10C01C02H351.4°0.3°
C10C01C04H371.5°0.3°
C10N11C13C14179.1°180.0°
C10N11C14C15153.9°140.6°
C10N11C13C16160.0°154.3°
C10N11C13H3980.7°34.9°
C10N11C13H4040.7°86.2°
C10N11C14H4234.7°100.9°
C10N11C14H4186.8°22.1°
O12C10N11C131.2°174.2°
O12C10N11C14179.9°5.8°
C13N11C14C1525.2°39.4°
N11C13C16H39119.3°119.4°
N11C13C16H40119.3°119.5°
N11C13C16C155.5°1.6°
N11C13C16C17137.0°115.2°
N11C13H39H40122.1°121.2°
N11C13C16H32103.7°119.9°
C13N11C14H42144.4°79.1°
C13N11C14H4194.1°157.8°
N11C14C15H42119.2°118.4°
N11C14C15H41119.3°118.4°
C14N11C13C1619.1°25.7°
N11C14C15C1621.3°37.2°
N11C14C15C19154.1°147.9°
C14N11C13H39100.2°145.1°
C14N11C13H40138.4°93.8°
N11C14C15H3187.0°85.4°
N11C14H42H41122.2°123.0°
C14C15C16C139.9°21.6°
C14C15C16C19143.3°113.8°
C14C15C16H31108.3°122.9°
C14C15C16C17133.2°93.6°
C14C15C19H31118.8°127.1°
C14C15C19C18100.6°73.8°
C14C15C16H32118.9°143.0°
C14C15C19H47141.0°167.8°
C14C15C19H4617.7°44.7°
C15C14H42H41122.2°123.1°
C13C16C15C17143.1°115.2°
C13C16C15H32109.1°121.5°
C13C16C17H32119.5°124.5°
C13C16C17C18114.2°109.2°
C13C16C15C19153.2°135.4°
C16C13H39H40122.1°121.1°
C13C16C15H3198.4°101.4°
C13C16C17H434.8°10.0°
C13C16C17H44126.9°131.4°
C15C16C17H32108.4°123.0°
C15C16C17C1817.9°3.2°
C16C15C19H31108.5°123.4°
C16C15C19C1832.0°35.7°
C15C16C13H39113.8°121.0°
C15C16C13H40124.8°117.9°
C15C16C17H43136.9°122.5°
C15C16C17H44101.0°116.1°
C16C15C19H4786.4°82.8°
C16C15C19H46150.4°154.1°
C16C15C14H42140.5°81.2°
C16C15C14H4197.9°155.7°
C16C17C18H43118.9°119.3°
C16C17C18H44119.0°119.3°
C17C16C15C1910.1°20.2°
C16C17C18C1937.7°25.3°
C16C17C18S20162.4°144.0°
C17C16C13H3917.7°125.4°
C17C16C13H40103.7°4.3°
C17C16C15H31118.5°143.5°
C16C17H43H44123.0°121.3°
C16C17C18H4577.0°93.3°
C17C18C19C1543.6°37.7°
C17C18C19S20125.9°118.7°
C17C18C19H45115.6°118.7°
C17C18S20H45121.6°122.7°
C17C18S20C21163.1°180.0°
C17C18S20O2977.4°65.5°
C17C18S20O3046.0°65.5°
C18C17C16H32126.3°126.2°
C18C17H43H44123.0°121.4°
C17C18C19H4774.8°80.8°
C17C18C19H46162.0°156.1°
C15C19C18H47118.4°118.5°
C15C19C18H46118.4°118.4°
C15C19C18S20169.5°156.4°
C19C15C16H3297.7°103.2°
C15C19C18H4572.0°81.0°
C15C19H47H46124.6°123.0°
C19C15C14H4286.6°29.4°
C19C15C14H4134.9°93.7°
C19C18S20H45118.8°122.6°
C19C18S20C2143.5°65.3°
C19C18S20O29163.0°179.8°
C19C18S20O3073.5°49.3°
C18C19C15H31140.5°159.1°
C19C18C17H43156.7°144.6°
C19C18C17H4481.3°93.9°
C18C19H47H46124.5°123.1°
C18S20C21O29121.1°114.5°
C18S20C21O30114.4°114.5°
C18S20C21C22156.1°180.0°
C18S20O29O30118.5°124.9°
S20C18C17H4378.6°96.7°
S20C18C17H4443.5°24.7°
S20C18C19H4751.1°37.9°
S20C18C19H4672.1°85.2°
C18S20C21H4983.7°60.0°
C18S20C21H4836.0°60.0°
S20C21C22H49120.1°120.0°
S20C21C22H48120.1°119.9°
S20C21C22C23149.8°180.0°
C21S20O29O30121.9°125.0°
C21S20C18H4575.3°57.3°
S20C21H49H48119.7°119.9°
S20C21C22H5090.9°60.0°
S20C21C22H5130.5°60.0°
C21C22C23H50119.3°120.0°
C21C22C23H51119.3°120.0°
C21C22C23C2454.8°90.0°
C21C22C23C28123.4°90.3°
C22C21S20O2935.0°65.5°
C22C21S20O3089.5°65.5°
C22C21H49H48119.6°120.1°
C21C22H50H51122.1°120.0°
C22C23C24C28178.2°179.7°
C22C23C24C25178.7°180.0°
C22C23C28C27178.6°179.8°
C23C22C21H4929.7°60.0°
C23C22C21H4890.1°60.1°
C23C22H50H51122.1°120.0°
C22C23C24H521.3°0.0°
C22C23C28H541.4°0.0°
C23C24C25H52180.0°180.0°
C23C24C25C260.1°0.1°
C24C23C28C270.4°0.5°
C23C24C25CL33179.8°179.9°
C24C23C22H50174.1°30.0°
C24C23C22H5164.5°150.0°
C24C23C28H54179.6°179.7°
C24C25C26CL33179.7°180.0°
C24C25C26C270.6°0.0°
C25C24C23C280.5°0.3°
C24C25C26H53179.5°180.0°
C25C26C27H53180.0°180.0°
C25C26C27C280.8°0.2°
C25C26C27CL34179.6°180.0°
C26C25C24H52179.9°180.0°
C26C27C28C230.3°0.5°
C26C27C28CL34179.7°179.8°
C27C26C25CL33179.2°180.0°
C26C27C28H54179.7°179.7°
C23C28C27H54180.0°179.8°
C23C28C27CL34180.0°179.7°
C28C23C22H504.2°149.7°
C28C23C22H51117.3°29.7°
C28C23C24H52179.5°179.7°
C28C27C26H53179.2°179.8°
O29S20C18H4544.2°57.2°
O29S20C21H49155.1°54.5°
O29S20C21H4885.1°174.5°
O30S20C18H45167.6°171.9°
O30S20C21H4930.7°174.5°
O30S20C21H48150.4°54.5°
CL33C25C24H520.2°0.0°
CL33C25C26H530.8°0.0°
CL34C27C26H530.4°0.0°
CL34C27C28H540.0°0.1°
H35C02C03H360.7°0.0°
H39C13C16H32137.0°0.5°
H40C13C16H3215.6°120.6°
H31C15C16H3210.7°20.1°
H31C15C19H4722.1°40.7°
H31C15C19H46101.1°82.4°
H31C15C14H4232.2°156.2°
H31C15C14H41153.7°33.0°
H32C16C17H43114.7°114.5°
H32C16C17H447.4°6.9°
H43C17C18H4541.9°25.9°
H44C17C18H45164.0°147.4°
H45C18C19H47169.5°160.5°
H45C18C19H4646.3°37.4°
H49C21C22H50148.9°60.0°
H49C21C22H5189.6°180.0°
H48C21C22H5029.2°180.0°
H48C21C22H51150.7°59.9°

251801

PDB entries from 2026-04-08

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