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Y2F

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C02N01doub1.32Å1.36ÅAromatic
C06N01sing1.32Å1.36ÅAromatic
C03C02sing1.39Å1.40ÅAromatic
C02N02sing1.39Å1.36Å
N02HN02sing0.97Å1.00Å
N02HN0Asing0.97Å1.00Å
C04C03doub1.38Å1.40ÅAromatic
C03H03sing1.08Å1.08Å
C07C04sing1.51Å1.51Å
C04C05sing1.39Å1.40ÅAromatic
C05C06doub1.38Å1.40ÅAromatic
C05H05sing1.08Å1.08Å
C06C08sing1.51Å1.53Å
C07H07sing1.09Å1.10Å
C07H07Asing1.09Å1.10Å
C07H07Bsing1.09Å1.10Å
C4'C08sing1.53Å1.54Å
C08H08sing1.09Å1.10Å
C08H08Asing1.09Å1.10Å
C3'O09sing1.43Å1.43Å
O09C10sing1.43Å1.43Å
N1'C5'sing1.49Å1.47Å
N1'C2'sing1.49Å1.45Å
N1'HN1'sing1.01Å1.00Å
C10C11sing1.53Å1.53Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
N12C11sing1.47Å1.45Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
N12C13sing1.47Å1.46Å
N12HN12sing1.01Å1.00Å
C13C15sing1.53Å1.53Å
C13C14sing1.53Å1.52Å
C13H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C14H14Bsing1.09Å1.10Å
C15C21sing1.51Å1.53Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C2'C3'sing1.54Å1.53Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C22C21doub1.38Å1.40ÅAromatic
C21C26sing1.38Å1.38ÅAromatic
C22C23sing1.38Å1.40ÅAromatic
C22H22sing1.08Å1.08Å
C23C24doub1.38Å1.40ÅAromatic
C23H23sing1.08Å1.08Å
C24C25sing1.39Å1.39ÅAromatic
C24H24sing1.08Å1.08Å
C26C25doub1.38Å1.39ÅAromatic
C25F25sing1.35Å1.35Å
C26H26sing1.08Å1.08Å
C4'C3'sing1.54Å1.52Å
C3'H3'sing1.09Å1.10Å
C5'C4'sing1.54Å1.54Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C02N01C06122.8°121.6°
N01C02C03119.1°120.6°
N01C02N02121.3°119.7°
N01C06C05119.7°120.9°
N01C06C08119.5°119.5°
C03C02N02119.6°119.6°
C02C03C04119.7°119.1°
C02C03H03120.1°120.5°
C02N02HN02109.5°119.9°
C02N02HN0A109.5°120.0°
HN02N02HN0A109.5°120.0°
C04C03H03120.1°120.4°
C03C04C07119.7°120.8°
C03C04C05119.7°118.6°
C07C04C05120.6°120.7°
C04C07H07109.5°109.5°
C04C07H07A109.5°109.5°
C04C07H07B109.5°109.4°
C04C05C06119.0°119.3°
C04C05H05120.5°120.4°
C06C05H05120.5°120.3°
C05C06C08120.8°119.6°
C06C08C4'109.9°109.4°
C06C08H08109.3°109.5°
C06C08H08A109.3°109.4°
H07C07H07A109.4°109.5°
H07C07H07B109.5°109.5°
H07AC07H07B109.5°109.4°
C4'C08H08109.3°109.5°
C4'C08H08A109.3°109.4°
C08C4'C3'115.2°110.3°
C08C4'C5'115.8°110.3°
C08C4'H4'98.6°110.3°
H08C08H08A109.6°109.6°
C3'O09C10114.9°114.0°
O09C3'C2'108.4°110.3°
O09C3'C4'106.8°110.4°
O09C3'H3'110.1°110.3°
O09C10C11107.8°109.5°
O09C10H10110.0°109.5°
O09C10H10A110.1°109.4°
C5'N1'C2'111.9°104.2°
C5'N1'HN1'108.7°111.0°
N1'C5'C4'103.9°104.6°
N1'C5'H5'111.4°110.4°
N1'C5'H5'A111.4°110.5°
C2'N1'HN1'108.7°111.0°
N1'C2'C3'102.9°104.6°
N1'C2'H2'111.7°110.4°
N1'C2'H2'A111.7°110.4°
C11C10H10110.0°109.5°
C11C10H10A110.0°109.5°
C10C11N12114.4°109.5°
C10C11H11107.9°109.5°
C10C11H11A107.8°109.5°
H10C10H10A108.9°109.5°
N12C11H11107.9°109.5°
N12C11H11A107.9°109.4°
C11N12C13121.4°111.0°
C11N12HN12105.7°111.0°
H11C11H11A111.1°109.5°
C13N12HN12105.7°111.0°
N12C13C15111.2°109.5°
N12C13C14112.7°109.5°
N12C13H13106.1°109.5°
C15C13C14110.0°109.5°
C15C13H13109.1°109.5°
C13C15C21112.6°109.5°
C13C15H15108.5°109.5°
C13C15H15A108.4°109.5°
C14C13H13107.5°109.4°
C13C14H14109.5°109.5°
C13C14H14A109.5°109.5°
C13C14H14B109.5°109.5°
H14C14H14A109.5°109.4°
H14C14H14B109.4°109.5°
H14AC14H14B109.5°109.4°
C21C15H15108.4°109.4°
C21C15H15A108.5°109.5°
C15C21C22123.6°120.0°
C15C21C26118.1°120.0°
H15C15H15A110.5°109.4°
C3'C2'H2'111.7°110.4°
C3'C2'H2'A111.7°110.4°
C2'C3'C4'103.2°105.1°
C2'C3'H3'113.2°110.3°
H2'C2'H2'A107.2°110.4°
C22C21C26118.3°120.0°
C21C22C23121.4°120.1°
C21C22H22119.3°120.0°
C21C26C25120.9°120.0°
C21C26H26119.5°120.1°
C23C22H22119.3°120.0°
C22C23C24119.3°120.0°
C22C23H23120.3°120.0°
C24C23H23120.4°119.9°
C23C24C25119.0°120.0°
C23C24H24120.5°120.0°
C25C24H24120.5°120.0°
C24C25C26121.1°119.9°
C24C25F25122.6°120.0°
C26C25F25116.3°120.0°
C25C26H26119.6°120.0°
C4'C3'H3'114.7°110.4°
C3'C4'C5'102.0°105.1°
C3'C4'H4'113.2°110.3°
C5'C4'H4'112.6°110.5°
C4'C5'H5'111.4°110.4°
C4'C5'H5'A111.4°110.4°
H5'C5'H5'A107.5°110.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N01C02C03N02179.4°180.0°
N01C02N02HN020.0°0.0°
N01C02N02HN0A120.0°180.0°
N01C02C03C040.0°0.0°
N01C02C03H03180.0°179.9°
C02N01C06C050.7°0.1°
C02N01C06C08179.3°180.0°
C06N01C02C030.4°0.0°
C06N01C02N02179.7°180.0°
N01C06C05C040.7°0.1°
N01C06C05C08180.0°179.9°
N01C06C05H05179.4°180.0°
N01C06C08C4'111.7°55.1°
N01C06C08H08128.2°65.0°
N01C06C08H08A8.3°175.0°
C03C02N02HN02179.4°180.0°
C03C02N02HN0A59.3°0.0°
C02C03C04H03180.0°179.9°
C02C03C04C07179.7°180.0°
C02C03C04C050.0°0.0°
C02N02HN02HN0A120.0°180.0°
N02C02C03C04179.4°180.0°
N02C02C03H030.7°0.1°
C03C04C07C05179.7°180.0°
C03C04C05C060.3°0.0°
C03C04C05H05179.7°180.0°
C03C04C07H0790.2°90.0°
C03C04C07H07A149.9°150.0°
C03C04C07H07B29.8°30.0°
H03C03C04C070.3°0.1°
H03C03C04C05180.0°179.9°
C07C04C05C06179.4°180.0°
C07C04C05H050.6°0.0°
C04C07H07H07A120.0°120.1°
C04C07H07H07B120.0°120.0°
C04C07H07AH07B120.0°119.9°
C04C05C06H05180.0°180.0°
C04C05C06C08179.3°180.0°
C05C04C07H0790.1°90.1°
C05C04C07H07A29.8°30.0°
C05C04C07H07B149.9°149.9°
C05C06C08C4'68.2°125.0°
C05C06C08H0851.8°115.0°
C05C06C08H08A171.8°5.1°
H05C05C06C080.7°0.1°
C06C08C4'H08120.0°120.0°
C06C08C4'H08A120.0°119.9°
C06C08H08H08A119.8°120.0°
C06C08C4'C3'171.3°175.0°
C06C08C4'C5'69.8°69.4°
C06C08C4'H4'50.5°52.9°
H07C07H07AH07B120.0°120.0°
C4'C08H08H08A119.8°120.0°
C08C4'C3'O0952.0°0.0°
C08C4'C5'N1'155.4°142.7°
C08C4'C3'C2'166.1°118.9°
C08C4'C3'C5'126.4°118.9°
C08C4'C3'H4'112.4°122.1°
C08C4'C3'H3'70.2°122.2°
C08C4'C5'H4'112.4°122.2°
C08C4'C5'H5'84.6°98.5°
C08C4'C5'H5'A35.3°23.9°
H08C08C4'C3'51.3°55.0°
H08C08C4'C5'170.2°170.6°
H08C08C4'H4'69.5°67.1°
H08AC08C4'C3'68.8°65.1°
H08AC08C4'C5'50.2°50.5°
H08AC08C4'H4'170.5°172.8°
O09C3'C2'N1'77.8°142.8°
C3'O09C10C11176.0°180.0°
C3'O09C10H1064.0°60.0°
C3'O09C10H10A56.0°60.0°
O09C3'C2'C4'113.0°118.9°
O09C3'C2'H3'122.4°122.1°
O09C3'C2'H2'42.2°24.0°
O09C3'C2'H2'A162.2°98.4°
O09C3'C4'H3'122.2°122.2°
O09C3'C4'C5'74.4°118.9°
O09C3'C4'H4'164.4°122.1°
O09C10C11H10120.0°120.0°
O09C10C11H10A120.0°120.0°
O09C10H10H10A120.7°120.0°
O09C10C11N1269.7°65.0°
O09C10C11H11170.3°175.0°
O09C10C11H11A50.2°54.9°
C10O09C3'C2'68.3°91.4°
C10O09C3'C4'178.9°152.9°
C10O09C3'H3'56.0°30.6°
C5'N1'C2'HN1'120.0°119.5°
C5'N1'C2'C3'16.9°39.5°
C5'N1'C2'H2'136.9°79.3°
C5'N1'C2'H2'A103.1°158.3°
N1'C5'C4'C3'29.4°23.9°
N1'C5'C4'H5'120.0°118.7°
N1'C5'C4'H5'A120.0°118.8°
N1'C5'C4'H4'92.2°95.1°
N1'C5'H5'H5'A122.3°122.4°
N1'C2'C3'H2'120.0°118.8°
N1'C2'C3'H2'A120.0°118.8°
N1'C2'H2'H2'A122.7°122.4°
N1'C2'C3'C4'35.2°23.8°
N1'C2'C3'H3'159.8°95.2°
C2'N1'C5'C4'7.9°39.5°
C2'N1'C5'H5'127.9°158.2°
C2'N1'C5'H5'A112.1°79.3°
HN1'N1'C2'C3'103.1°159.0°
HN1'N1'C2'H2'16.9°40.2°
HN1'N1'C2'H2'A136.9°82.2°
HN1'N1'C5'C4'127.9°159.0°
HN1'N1'C5'H5'112.1°82.3°
HN1'N1'C5'H5'A7.9°40.2°
C11C10H10H10A120.7°120.0°
C10C11N12H11120.0°120.0°
C10C11N12H11A120.0°120.0°
C10C11H11H11A118.0°120.1°
C10C11N12C13143.0°180.0°
C10C11N12HN1297.0°56.1°
H10C10C11N1250.3°55.0°
H10C10C11H1169.7°65.0°
H10C10C11H11A170.2°175.0°
H10AC10C11N12170.2°175.0°
H10AC10C11H1150.2°55.0°
H10AC10C11H11A69.8°65.0°
N12C11H11H11A118.0°119.9°
C11N12C13HN12120.0°124.0°
C11N12C13C15133.5°155.0°
C11N12C13C149.4°85.0°
C11N12C13H13108.0°35.0°
H11C11N12C1323.0°60.0°
H11C11N12HN12143.0°176.1°
H11AC11N12C1397.1°60.0°
H11AC11N12HN1222.9°63.9°
N12C13C15C14125.7°120.0°
N12C13C15H13116.7°120.0°
N12C13C14H13116.6°120.0°
N12C13C14H14180.0°60.0°
N12C13C14H14A60.0°60.0°
N12C13C14H14B60.0°180.0°
N12C13C15C21175.9°65.0°
N12C13C15H1564.1°175.0°
N12C13C15H15A55.9°55.0°
HN12N12C13C1513.5°81.1°
HN12N12C13C14110.6°39.0°
HN12N12C13H13132.0°158.9°
C15C13C14H13118.6°120.0°
C15C13C14H1455.2°180.0°
C15C13C14H14A175.2°60.0°
C15C13C14H14B64.8°60.0°
C13C15C21H15120.0°120.0°
C13C15C21H15A120.0°120.1°
C13C15H15H15A118.7°120.0°
C13C15C21C2255.8°89.7°
C13C15C21C26124.6°89.9°
C13C14H14H14A120.0°120.0°
C13C14H14H14B120.0°120.1°
C13C14H14AH14B120.0°120.0°
C14C13C15C2158.4°175.0°
C14C13C15H1561.6°55.0°
C14C13C15H15A178.4°65.0°
H13C13C14H1463.4°60.0°
H13C13C14H14A56.6°180.0°
H13C13C14H14B176.6°60.0°
H13C13C15C2159.2°55.0°
H13C13C15H15179.2°65.0°
H13C13C15H15A60.8°175.1°
H14C14H14AH14B120.0°119.9°
C21C15H15H15A118.7°119.9°
C15C21C22C26179.6°179.6°
C15C21C22C23179.0°180.0°
C15C21C22H221.0°0.2°
C15C21C26C25179.1°179.8°
C15C21C26H260.9°0.1°
H15C15C21C22175.8°150.3°
H15C15C21C264.6°30.1°
H15AC15C21C2264.2°30.4°
H15AC15C21C26115.4°150.0°
C3'C2'H2'H2'A122.6°122.4°
C2'C3'C4'H3'123.6°118.9°
C2'C3'C4'C5'39.8°0.0°
C2'C3'C4'H4'81.4°119.0°
H2'C2'C3'C4'155.2°94.9°
H2'C2'C3'H3'80.3°146.1°
H2'AC2'C3'C4'84.8°142.6°
H2'AC2'C3'H3'39.8°23.6°
C21C22C23H22180.0°179.9°
C21C22C23C240.7°0.1°
C21C22C23H23179.3°179.9°
C22C21C26C250.6°0.6°
C22C21C26H26179.4°179.7°
C26C21C22C230.6°0.4°
C26C21C22H22179.4°179.8°
C21C26C25C240.6°0.6°
C21C26C25H26180.0°179.7°
C21C26C25F25179.2°179.7°
C22C23C24H23180.0°180.0°
C22C23C24C250.7°0.0°
C22C23C24H24179.3°180.0°
H22C22C23C24179.3°179.9°
H22C22C23H230.7°0.0°
C23C24C25H24180.0°180.0°
C23C24C25C260.6°0.2°
C23C24C25F25179.2°180.0°
H23C23C24C25179.3°179.9°
H23C23C24H240.7°0.0°
C24C25C26F25179.8°179.8°
C24C25C26H26179.4°179.7°
H24C24C25C26179.4°179.8°
H24C24C25F250.8°0.0°
F25C25C26H260.8°0.0°
C3'C4'C5'H4'121.7°119.0°
C3'C4'C5'H5'149.4°142.6°
C3'C4'C5'H5'A90.6°94.9°
H3'C3'C4'C5'163.4°118.9°
H3'C3'C4'H4'42.2°0.1°
C4'C5'H5'H5'A122.3°122.4°
H4'C4'C5'H5'27.8°23.7°
H4'C4'C5'H5'A147.7°146.1°

222624

PDB entries from 2024-07-17

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