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Y2B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C02N01doub1.32Å1.37ÅAromatic
C02N02sing1.39Å1.37Å
N02HN02sing0.97Å1.00Å
N02HN0Asing0.97Å1.00Å
C03C02sing1.39Å1.40ÅAromatic
C03H03sing1.08Å1.08Å
C04C03doub1.38Å1.41ÅAromatic
C04C05sing1.39Å1.40ÅAromatic
C05C06doub1.38Å1.39ÅAromatic
C05H05sing1.08Å1.08Å
C06N01sing1.32Å1.36ÅAromatic
C06C08sing1.51Å1.51Å
C07C04sing1.51Å1.51Å
C07H07sing1.09Å1.10Å
C07H07Asing1.09Å1.10Å
C07H07Bsing1.09Å1.10Å
C08H08sing1.09Å1.10Å
C08H08Asing1.09Å1.10Å
O09C10sing1.43Å1.43Å
N1'C5'sing1.49Å1.47Å
N1'C2'sing1.49Å1.47Å
N1'HN1'sing1.01Å1.00Å
C10C11sing1.53Å1.53Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
N12C11sing1.47Å1.46Å
N12C13sing1.47Å1.46Å
C13H13sing1.09Å1.10Å
C14C13sing1.53Å1.53Å
C14C15sing1.53Å1.52Å
C14C21sing1.51Å1.50Å
C14H14sing1.09Å1.10Å
C15C13sing1.53Å1.53Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C2'C3'sing1.54Å1.55Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C21C22sing1.38Å1.40ÅAromatic
C22C23doub1.38Å1.40ÅAromatic
C22H22sing1.08Å1.08Å
C23F23sing1.35Å1.36Å
C24C23sing1.38Å1.40ÅAromatic
C24H24sing1.08Å1.08Å
C25C24doub1.38Å1.41ÅAromatic
C25H25sing1.08Å1.08Å
C26C21doub1.38Å1.40ÅAromatic
C26C25sing1.38Å1.39ÅAromatic
C26H26sing1.08Å1.08Å
C3'C08sing1.53Å1.54Å
C3'C4'sing1.54Å1.52Å
C3'H3'sing1.09Å1.10Å
C4'O09sing1.43Å1.43Å
C4'H4'sing1.09Å1.10Å
C5'C4'sing1.54Å1.54Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
N12H27sing1.01Å1.00Å
C11H11sing1.09Å1.10Å
C11H29sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N01C02N02120.8°119.7°
N01C02C03118.5°120.6°
C02N01C06122.3°121.7°
C02N02HN02109.5°119.9°
C02N02HN0A109.4°120.0°
N02C02C03120.7°119.7°
HN02N02HN0A109.5°120.0°
C02C03H03119.9°120.5°
C02C03C04120.2°119.0°
H03C03C04119.9°120.5°
C03C04C05119.8°118.6°
C03C04C07120.6°120.7°
C04C05C06118.7°119.3°
C04C05H05120.6°120.3°
C05C04C07119.6°120.7°
C06C05H05120.7°120.3°
C05C06N01120.6°120.8°
C05C06C08120.2°119.6°
N01C06C08119.2°119.6°
C06C08H08109.3°109.5°
C06C08H08A109.3°109.5°
C06C08C3'109.9°109.5°
C04C07H07109.5°109.5°
C04C07H07A109.5°109.5°
C04C07H07B109.4°109.5°
H07C07H07A109.4°109.5°
H07C07H07B109.5°109.4°
H07AC07H07B109.5°109.5°
H08C08H08A109.6°109.5°
H08C08C3'109.3°109.4°
H08AC08C3'109.3°109.4°
O09C10C11106.6°109.5°
O09C10H10110.4°109.4°
O09C10H10A110.4°109.4°
C10O09C4'116.8°114.0°
C5'N1'C2'111.1°104.2°
C5'N1'HN1'108.9°110.9°
N1'C5'C4'102.4°104.6°
N1'C5'H5'111.9°110.4°
N1'C5'H5'A111.9°110.4°
C2'N1'HN1'108.9°111.0°
N1'C2'C3'103.9°104.6°
N1'C2'H2'111.4°110.4°
N1'C2'H2'A111.4°110.4°
C11C10H10110.4°109.5°
C11C10H10A110.4°109.5°
C10C11N12116.8°109.4°
C10C11H11107.1°109.4°
C10C11H29107.1°109.4°
H10C10H10A108.5°109.5°
C11N12C13118.3°110.9°
C11N12H27106.7°111.0°
N12C11H11107.1°109.5°
N12C11H29107.1°109.5°
N12C13H13104.8°115.6°
N12C13C14111.0°117.5°
N12C13C15101.9°117.5°
C13N12H27106.6°111.0°
H13C13C14132.5°117.6°
H13C13C15140.0°117.5°
C13C14C1560.4°60.0°
C13C14C21120.6°117.5°
C13C14H14130.6°117.6°
C14C13C1559.6°60.0°
C15C14C21109.7°117.4°
C15C14H14139.8°117.5°
C14C15C1360.0°60.0°
C14C15H15130.9°117.5°
C14C15H15A130.9°117.5°
C21C14H1495.8°115.6°
C14C21C22123.8°119.9°
C14C21C26118.2°120.0°
C13C15H15130.9°117.5°
C13C15H15A130.9°117.5°
H15C15H15A81.8°115.5°
C3'C2'H2'111.4°110.4°
C3'C2'H2'A111.4°110.5°
C2'C3'C08114.6°110.3°
C2'C3'C4'102.2°105.0°
C2'C3'H3'113.5°110.3°
H2'C2'H2'A107.5°110.5°
C21C22C23120.6°119.9°
C21C22H22119.7°120.0°
C22C21C26118.0°120.0°
C23C22H22119.7°120.0°
C22C23F23119.4°120.0°
C22C23C24120.5°120.0°
F23C23C24120.1°120.0°
C23C24H24120.2°120.0°
C23C24C25119.6°120.0°
H24C24C25120.2°120.0°
C24C25H25120.7°120.0°
C24C25C26118.6°120.0°
H25C25C26120.7°119.9°
C21C26C25122.6°120.0°
C21C26H26118.7°119.9°
C25C26H26118.7°120.1°
C08C3'C4'115.9°110.4°
C08C3'H3'99.1°110.3°
C4'C3'H3'112.1°110.4°
C3'C4'O09104.0°110.3°
C3'C4'H4'116.9°110.3°
C3'C4'C5'102.2°105.1°
O09C4'H4'111.5°110.2°
O09C4'C5'108.4°110.3°
H4'C4'C5'113.1°110.4°
C4'C5'H5'111.9°110.5°
C4'C5'H5'A111.9°110.4°
H5'C5'H5'A106.9°110.4°
H11C11H29111.7°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N01C02N02C03179.1°180.0°
N01C02N02HN020.0°0.0°
N01C02N02HN0A120.0°180.0°
N01C02C03H03179.8°180.0°
N01C02C03C040.2°0.0°
C02N01C06C050.9°0.0°
C02N01C06C08179.2°180.0°
C02N02HN02HN0A120.0°179.9°
N02C02C03H031.1°0.0°
N02C02C03C04178.8°180.0°
N02C02N01C06178.7°180.0°
HN02N02C02C03179.1°180.0°
HN0AN02C02C0360.9°0.0°
C02C03H03C04180.0°180.0°
C02C03C04C050.6°0.0°
C03C02N01C060.4°0.0°
C02C03C04C07179.9°180.0°
H03C03C04C05179.4°180.0°
H03C03C04C070.0°0.0°
C03C04C05C07179.5°180.0°
C03C04C05C061.0°0.0°
C03C04C05H05178.9°180.0°
C03C04C07H0789.8°90.0°
C03C04C07H07A150.3°150.0°
C03C04C07H07B30.3°29.9°
C04C05C06H05180.0°179.9°
C04C05C06N011.2°0.0°
C04C05C06C08178.9°180.0°
C05C04C07H0789.7°90.1°
C05C04C07H07A30.3°30.0°
C05C04C07H07B150.3°150.0°
C05C06N01C08180.0°179.9°
C06C05C04C07179.5°180.0°
C05C06C08H0849.8°115.0°
C05C06C08H08A169.8°5.1°
C05C06C08C3'70.2°125.0°
H05C05C06N01178.8°180.0°
H05C05C06C081.1°0.1°
H05C05C04C070.5°0.1°
N01C06C08H08130.2°65.0°
N01C06C08H08A10.1°175.0°
N01C06C08C3'109.9°55.0°
C06C08H08H08A119.9°120.1°
C06C08H08C3'120.3°120.0°
C06C08H08AC3'120.4°120.0°
C06C08C3'C2'74.6°66.4°
C06C08C3'C4'166.7°177.9°
C06C08C3'H3'46.6°55.7°
C04C07H07H07A120.0°120.0°
C04C07H07H07B120.0°119.9°
C04C07H07AH07B120.0°120.0°
H07C07H07AH07B120.0°120.0°
H08C08H08AC3'119.8°119.9°
H08C08C3'C2'165.5°173.5°
H08C08C3'C4'46.7°57.9°
H08C08C3'H3'73.4°64.4°
H08AC08C3'C2'45.5°53.5°
H08AC08C3'C4'73.3°62.1°
H08AC08C3'H3'166.6°175.7°
O09C10C11H10120.0°120.0°
O09C10C11H10A120.0°120.0°
O09C10H10H10A121.2°119.9°
O09C10C11N1287.9°65.0°
C10O09C4'C3'175.9°150.0°
C10O09C4'H4'49.1°27.9°
C10O09C4'C5'76.0°94.3°
O09C10C11H11152.1°175.0°
O09C10C11H2932.1°55.0°
C5'N1'C2'HN1'120.0°119.4°
C5'N1'C2'C3'7.0°39.5°
C5'N1'C2'H2'127.0°158.2°
C5'N1'C2'H2'A113.0°79.4°
N1'C5'C4'C3'37.7°23.9°
N1'C5'C4'O0971.7°142.7°
N1'C5'C4'H4'164.2°95.1°
N1'C5'C4'H5'120.0°118.8°
N1'C5'C4'H5'A120.0°118.8°
N1'C5'H5'H5'A122.9°122.4°
N1'C2'C3'H2'120.0°118.7°
N1'C2'C3'H2'A120.0°118.8°
N1'C2'H2'H2'A122.2°122.3°
N1'C2'C3'C08156.7°142.8°
N1'C2'C3'C4'30.5°23.9°
N1'C2'C3'H3'90.4°95.1°
C2'N1'C5'C4'19.0°39.5°
C2'N1'C5'H5'139.0°79.4°
C2'N1'C5'H5'A101.0°158.3°
HN1'N1'C2'C3'113.0°80.0°
HN1'N1'C2'H2'7.0°38.8°
HN1'N1'C2'H2'A127.0°161.2°
HN1'N1'C5'C4'139.0°80.0°
HN1'N1'C5'H5'101.0°161.2°
HN1'N1'C5'H5'A19.0°38.8°
C11C10H10H10A121.2°120.0°
C10C11N12H11120.0°120.0°
C10C11N12H29120.0°120.0°
C10C11N12C13177.6°180.0°
C11C10O09C4'178.0°180.0°
C10C11N12H2762.3°56.1°
C10C11H11H29117.0°120.0°
H10C10C11N1232.1°55.0°
H10C10O09C4'62.0°59.9°
H10C10C11H1187.9°65.0°
H10C10C11H29152.1°175.0°
H10AC10C11N12152.1°175.0°
H10AC10O09C4'58.0°60.0°
H10AC10C11H1132.1°55.0°
H10AC10C11H2987.9°65.0°
C11N12C13H27120.0°123.9°
C11N12C13H1342.2°9.4°
C11N12C13C14169.5°155.1°
C11N12C13C15107.7°136.2°
N12C11H11H29117.0°120.1°
N12C13H13C14138.3°145.7°
N12C13H13C15130.3°145.6°
N12C13C14C1591.7°107.5°
N12C13C14C21171.6°145.1°
N12C13C14H1440.3°0.0°
N12C13C15H1512.4°145.0°
N12C13C15H15A132.4°0.0°
C13N12C11H1157.6°60.0°
C13N12C11H2962.3°60.0°
H13C13C14C15131.8°107.5°
H13C13C14C2135.2°0.0°
H13C13C14H1496.2°145.0°
H13C13C15H15118.8°0.1°
H13C13C15H15A1.3°145.0°
H13C13N12H27162.3°133.3°
C13C14C15C21114.7°107.5°
C13C14C15H14119.1°107.6°
C13C14C21H14145.0°145.8°
C13C14C15H15120.0°107.5°
C13C14C15H15A120.0°107.5°
C13C14C21C2248.3°120.0°
C13C14C21C26133.6°59.7°
C14C13N12H2749.4°81.0°
C15C14C21H14148.4°145.7°
C14C15H15H15A138.6°145.6°
C15C14C21C2218.3°171.4°
C15C14C21C26159.8°8.9°
C21C14C15H15125.2°0.1°
C21C14C15H15A5.3°145.0°
C14C21C22C26178.1°179.7°
C14C21C22C23179.1°180.0°
C14C21C22H220.9°0.0°
C14C21C26C25179.1°179.7°
C14C21C26H260.9°0.0°
H14C14C15H150.9°144.9°
H14C14C15H15A120.9°0.0°
H14C14C21C22166.7°25.7°
H14C14C21C2611.4°154.5°
C13C15H15H15A138.6°145.7°
C15C13N12H2712.3°12.3°
C3'C2'H2'H2'A122.2°122.5°
C2'C3'C08C4'118.7°115.6°
C2'C3'C08H3'121.2°122.1°
C2'C3'C4'H3'121.9°118.9°
C2'C3'C4'O0970.7°118.9°
C2'C3'C4'H4'166.0°119.1°
C2'C3'C4'C5'42.0°0.0°
H2'C2'C3'C0883.3°98.5°
H2'C2'C3'C4'150.6°142.6°
H2'C2'C3'H3'29.6°23.6°
H2'AC2'C3'C0836.7°24.0°
H2'AC2'C3'C4'89.5°94.9°
H2'AC2'C3'H3'149.6°146.1°
C21C22C23H22180.0°180.0°
C21C22C23F23178.8°180.0°
C21C22C23C240.7°0.0°
C22C21C26C250.9°0.6°
C22C21C26H26179.1°179.8°
C22C23F23C24178.1°179.9°
C22C23C24H24177.5°179.9°
C22C23C24C252.5°0.1°
C23C22C21C261.0°0.3°
H22C22C23F231.2°0.1°
H22C22C23C24179.3°180.0°
H22C22C21C26179.0°179.7°
F23C23C24H240.6°0.1°
F23C23C24C25179.5°180.0°
C23C24H24C25180.0°179.9°
C23C24C25H25177.5°180.0°
C23C24C25C262.5°0.4°
H24C24C25H252.5°0.1°
H24C24C25C26177.5°179.8°
C24C25H25C26180.0°179.7°
C24C25C26C210.8°0.6°
C24C25C26H26179.2°179.7°
H25C25C26C21179.2°179.7°
H25C25C26H260.9°0.1°
C21C26C25H26180.0°179.7°
C08C3'C4'H3'112.7°122.2°
C08C3'C4'O0954.7°0.0°
C08C3'C4'H4'68.7°122.1°
C08C3'C4'C5'167.4°118.9°
C3'C4'O09H4'126.8°122.1°
C3'C4'O09C5'108.1°115.7°
C3'C4'H4'C5'118.2°115.8°
C3'C4'C5'H5'157.7°94.9°
C3'C4'C5'H5'A82.3°142.7°
H3'C3'C4'O09167.4°122.1°
H3'C3'C4'H4'44.1°0.1°
H3'C3'C4'C5'79.9°119.0°
O09C4'H4'C5'122.4°122.2°
O09C4'C5'H5'48.3°24.0°
O09C4'C5'H5'A168.3°98.4°
H4'C4'C5'H5'75.8°146.1°
H4'C4'C5'H5'A44.2°23.7°
C4'C5'H5'H5'A122.8°122.4°
H27N12C11H11177.6°176.0°
H27N12C11H2957.7°63.9°

222624

PDB entries from 2024-07-17

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