Y2A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OB1 | CBC | doub | 1.21Å | 1.26Å | |
| CBC | OB2 | sing | 1.34Å | 1.26Å | |
| CBC | CB | sing | 1.51Å | 1.52Å | |
| OHB | CB | sing | 1.43Å | 1.40Å | |
| CB | CG | sing | 1.53Å | 1.52Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| OA1 | CAC | doub | 1.21Å | 1.25Å | |
| CG | CGC | sing | 1.51Å | 1.53Å | |
| CAC | CA | sing | 1.51Å | 1.52Å | |
| CAC | OA2 | sing | 1.34Å | 1.26Å | |
| OG1 | CGC | doub | 1.21Å | 1.18Å | |
| CGC | OG2 | sing | 1.34Å | 1.40Å | |
| OG2 | P | sing | 1.61Å | 1.65Å | |
| P | O4 | doub | 1.48Å | 1.50Å | |
| P | O1 | sing | 1.61Å | 1.50Å | |
| P | O3 | sing | 1.61Å | 1.49Å | |
| CA | H1 | sing | 1.09Å | 1.10Å | |
| CA | H2 | sing | 1.09Å | 1.10Å | |
| OB2 | H3 | sing | 0.97Å | 0.95Å | |
| CG | H4 | sing | 1.09Å | 1.10Å | |
| CG | H5 | sing | 1.09Å | 1.10Å | |
| O1 | H6 | sing | 0.97Å | 0.95Å | |
| O3 | H7 | sing | 0.97Å | 0.95Å | |
| OA2 | H8 | sing | 0.97Å | 0.95Å | |
| OHB | H9 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OB1 | CBC | OB2 | 120.3° | 120.0° |
| OB1 | CBC | CB | 119.2° | 120.0° |
| OB2 | CBC | CB | 120.5° | 120.0° |
| CBC | OB2 | H3 | 109.5° | 117.0° |
| CBC | CB | OHB | 109.1° | 109.5° |
| CBC | CB | CG | 107.1° | 109.5° |
| CBC | CB | CA | 111.0° | 109.5° |
| OHB | CB | CG | 109.6° | 109.5° |
| OHB | CB | CA | 109.3° | 109.5° |
| CB | OHB | H9 | 109.5° | 114.0° |
| CG | CB | CA | 110.8° | 109.4° |
| CB | CG | CGC | 115.3° | 109.4° |
| CB | CG | H4 | 108.0° | 109.5° |
| CB | CG | H5 | 108.0° | 109.4° |
| CB | CA | CAC | 114.6° | 109.5° |
| CB | CA | H1 | 108.2° | 109.5° |
| CB | CA | H2 | 108.2° | 109.5° |
| OA1 | CAC | CA | 119.8° | 120.0° |
| OA1 | CAC | OA2 | 120.3° | 120.0° |
| CG | CGC | OG1 | 119.5° | 120.0° |
| CG | CGC | OG2 | 120.1° | 119.9° |
| CGC | CG | H4 | 108.0° | 109.5° |
| CGC | CG | H5 | 108.0° | 109.5° |
| CA | CAC | OA2 | 119.9° | 120.0° |
| CAC | CA | H1 | 108.2° | 109.4° |
| CAC | CA | H2 | 108.2° | 109.4° |
| CAC | OA2 | H8 | 109.5° | 117.1° |
| OG1 | CGC | OG2 | 120.4° | 120.0° |
| CGC | OG2 | P | 120.8° | 117.0° |
| OG2 | P | O4 | 111.5° | 109.5° |
| OG2 | P | O1 | 110.6° | 109.5° |
| OG2 | P | O3 | 109.5° | 109.5° |
| O4 | P | O1 | 111.0° | 109.4° |
| O4 | P | O3 | 106.6° | 109.5° |
| O1 | P | O3 | 107.5° | 109.5° |
| P | O1 | H6 | 109.5° | 114.0° |
| P | O3 | H7 | 109.5° | 114.0° |
| H1 | CA | H2 | 109.5° | 109.5° |
| H4 | CG | H5 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OB1 | CBC | OB2 | CB | 179.4° | 180.0° |
| OB1 | CBC | CB | OHB | 28.7° | 0.0° |
| OB1 | CBC | CB | CG | 89.9° | 120.0° |
| OB1 | CBC | CB | CA | 149.1° | 120.0° |
| OB1 | CBC | OB2 | H3 | 0.0° | 0.0° |
| OB2 | CBC | CB | OHB | 151.9° | 180.0° |
| OB2 | CBC | CB | CG | 89.5° | 60.0° |
| OB2 | CBC | CB | CA | 31.5° | 60.0° |
| CBC | CB | OHB | CG | 117.0° | 120.0° |
| CBC | CB | OHB | CA | 121.5° | 120.0° |
| CBC | CB | CG | CA | 121.2° | 120.0° |
| CBC | CB | CG | CGC | 88.9° | 55.0° |
| CBC | CB | CA | CAC | 90.6° | 60.0° |
| CBC | CB | CA | H1 | 148.7° | 180.0° |
| CBC | CB | CA | H2 | 30.2° | 60.0° |
| CB | CBC | OB2 | H3 | 179.4° | 179.9° |
| CBC | CB | CG | H4 | 150.2° | 65.0° |
| CBC | CB | CG | H5 | 31.9° | 175.0° |
| CBC | CB | OHB | H9 | 92.0° | 180.0° |
| OHB | CB | CG | CA | 120.6° | 120.0° |
| OHB | CB | CG | CGC | 152.9° | 65.0° |
| OHB | CB | CA | CAC | 29.7° | 60.0° |
| OHB | CB | CA | H1 | 91.0° | 60.0° |
| OHB | CB | CA | H2 | 150.5° | 180.0° |
| OHB | CB | CG | H4 | 32.0° | 175.0° |
| OHB | CB | CG | H5 | 86.3° | 55.0° |
| CB | CG | CGC | H4 | 120.8° | 120.0° |
| CB | CG | CGC | H5 | 120.8° | 120.0° |
| CG | CB | CA | CAC | 150.6° | 180.0° |
| CB | CG | CGC | OG1 | 67.2° | 0.0° |
| CB | CG | CGC | OG2 | 114.2° | 180.0° |
| CG | CB | CA | H1 | 29.8° | 60.0° |
| CG | CB | CA | H2 | 88.7° | 60.0° |
| CB | CG | H4 | H5 | 117.4° | 120.0° |
| CG | CB | OHB | H9 | 151.0° | 60.0° |
| CB | CA | CAC | OA1 | 2.2° | 0.0° |
| CA | CB | CG | CGC | 32.2° | 175.0° |
| CB | CA | CAC | H1 | 120.7° | 120.0° |
| CB | CA | CAC | H2 | 120.7° | 120.0° |
| CB | CA | CAC | OA2 | 177.4° | 180.0° |
| CB | CA | H1 | H2 | 117.7° | 120.1° |
| CA | CB | CG | H4 | 88.6° | 55.0° |
| CA | CB | CG | H5 | 153.1° | 65.0° |
| CA | CB | OHB | H9 | 29.5° | 60.0° |
| OA1 | CAC | CA | OA2 | 179.6° | 180.0° |
| OA1 | CAC | CA | H1 | 118.6° | 120.0° |
| OA1 | CAC | CA | H2 | 122.9° | 120.0° |
| OA1 | CAC | OA2 | H8 | 0.0° | 0.0° |
| CG | CGC | OG1 | OG2 | 178.6° | 179.9° |
| CG | CGC | OG2 | P | 149.1° | 180.0° |
| CGC | CG | H4 | H5 | 117.4° | 120.1° |
| CAC | CA | H1 | H2 | 117.7° | 119.9° |
| CA | CAC | OA2 | H8 | 179.6° | 180.0° |
| OA2 | CAC | CA | H1 | 61.8° | 60.0° |
| OA2 | CAC | CA | H2 | 56.7° | 60.0° |
| OG1 | CGC | OG2 | P | 32.3° | 0.0° |
| OG1 | CGC | CG | H4 | 172.0° | 120.0° |
| OG1 | CGC | CG | H5 | 53.6° | 119.9° |
| CGC | OG2 | P | O4 | 28.5° | 55.0° |
| CGC | OG2 | P | O1 | 95.5° | 174.9° |
| CGC | OG2 | P | O3 | 146.2° | 65.0° |
| OG2 | CGC | CG | H4 | 6.7° | 60.1° |
| OG2 | CGC | CG | H5 | 125.0° | 60.0° |
| OG2 | P | O4 | O1 | 123.8° | 120.0° |
| OG2 | P | O4 | O3 | 119.5° | 120.0° |
| OG2 | P | O1 | O3 | 119.5° | 120.0° |
| OG2 | P | O1 | H6 | 124.3° | 180.0° |
| OG2 | P | O3 | H7 | 120.8° | 60.1° |
| O4 | P | O1 | O3 | 116.2° | 120.0° |
| O4 | P | O1 | H6 | 0.0° | 60.0° |
| O4 | P | O3 | H7 | 0.0° | 180.0° |
| O1 | P | O3 | H7 | 119.0° | 60.0° |
| O3 | P | O1 | H6 | 116.2° | 60.0° |
