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SummaryGeometryRelated PDB entries

Y1Z

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CBACAZsing1.53Å1.53Å
CBANAVsing1.47Å1.46Å
CAZOAYsing1.43Å1.43Å
CANCAKsing1.51Å1.49Å
OAYCAXsing1.43Å1.42Å
CAQCAPdoub1.38Å1.40ÅAromatic
CAQCARsing1.39Å1.43ÅAromatic
CAPCAOsing1.40Å1.39ÅAromatic
CAKNALdoub1.31Å1.33ÅAromatic
CAKNAIsing1.36Å1.36ÅAromatic
NAVCARsing1.40Å1.42Å
NAVCAWsing1.47Å1.47Å
NAHNAIsing1.39Å1.40ÅAromatic
NAHCAGdoub1.31Å1.36ÅAromatic
NALNAMsing1.29Å1.42ÅAromatic
CARCASdoub1.40Å1.41ÅAromatic
NAICAJsing1.37Å1.33ÅAromatic
CAXCAWsing1.53Å1.55Å
CAOCAGsing1.48Å1.49Å
CAOCATdoub1.40Å1.42ÅAromatic
CAGCADsing1.47Å1.44ÅAromatic
NAMCAJdoub1.32Å1.34ÅAromatic
CAJCAEsing1.47Å1.40ÅAromatic
CASCATsing1.38Å1.39ÅAromatic
CASNAUsing1.40Å1.38Å
CADCAEdoub1.41Å1.41ÅAromatic
CADCACsing1.39Å1.39ÅAromatic
CAECAFsing1.39Å1.39ÅAromatic
CACCABdoub1.38Å1.38ÅAromatic
NAUSBBsing1.66Å1.54Å
CAFCAAdoub1.38Å1.41ÅAromatic
CABCAAsing1.39Å1.38ÅAromatic
OBDSBBdoub1.42Å1.44Å
SBBOBCdoub1.42Å1.47Å
SBBCBEsing1.76Å1.70Å
CBFCBEdoub1.38Å1.39ÅAromatic
CBFCBGsing1.38Å1.40ÅAromatic
CBECBJsing1.38Å1.39ÅAromatic
CBGCBHdoub1.38Å1.38ÅAromatic
CBJCLsing1.74Å1.77Å
CBJCBIdoub1.38Å1.40ÅAromatic
CBHCBIsing1.38Å1.37ÅAromatic
CBFH1sing1.08Å1.08Å
CBGH2sing1.08Å1.08Å
CBHH3sing1.08Å1.08Å
CBIH4sing1.08Å1.08Å
NAUH5sing0.97Å1.00Å
CBAH6sing1.09Å1.10Å
CBAH7sing1.09Å1.10Å
CAZH8sing1.09Å1.10Å
CAZH9sing1.09Å1.10Å
CAXH10sing1.09Å1.10Å
CAXH11sing1.09Å1.10Å
CAWH12sing1.09Å1.10Å
CAWH13sing1.09Å1.10Å
CAQH14sing1.08Å1.08Å
CAPH15sing1.08Å1.08Å
CATH16sing1.08Å1.08Å
CACH17sing1.08Å1.08Å
CABH18sing1.08Å1.08Å
CAAH19sing1.08Å1.08Å
CAFH20sing1.08Å1.08Å
CANH21sing1.09Å1.10Å
CANH22sing1.09Å1.10Å
CANH23sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAZCBANAV110.3°109.3°
CBACAZOAY108.5°109.3°
CAZCBAH6109.3°109.5°
CAZCBAH7109.2°109.5°
CBACAZH8109.7°109.5°
CBACAZH9109.7°109.5°
CBANAVCAR120.1°111.0°
CBANAVCAW110.8°110.7°
NAVCBAH6109.3°109.5°
NAVCBAH7109.3°109.5°
CAZOAYCAX112.9°113.7°
OAYCAZH8109.7°109.5°
OAYCAZH9109.7°109.5°
CANCAKNAL130.4°126.2°
CANCAKNAI123.4°126.3°
CAKCANH21109.5°109.5°
CAKCANH22109.5°109.4°
CAKCANH23109.4°109.5°
OAYCAXCAW107.5°109.3°
OAYCAXH10110.0°109.5°
OAYCAXH11109.9°109.5°
CAPCAQCAR122.5°120.1°
CAQCAPCAO117.6°120.1°
CAPCAQH14118.7°120.0°
CAQCAPH15121.2°119.9°
CAQCARNAV119.5°120.0°
CAQCARCAS119.0°120.1°
CARCAQH14118.8°119.9°
CAPCAOCAG118.3°120.1°
CAPCAOCAT119.9°119.9°
CAOCAPH15121.2°119.9°
NALCAKNAI106.2°107.5°
CAKNALNAM109.1°110.2°
CAKNAINAH124.2°133.0°
CAKNAICAJ110.4°105.7°
CARNAVCAW111.3°111.0°
NAVCARCAS121.5°120.0°
NAVCAWCAX110.7°109.3°
NAVCAWH12109.1°109.5°
NAVCAWH13109.2°109.5°
NAINAHCAG115.6°122.5°
NAHNAICAJ125.4°121.3°
NAHCAGCAO113.8°119.9°
NAHCAGCAD120.8°120.3°
NALNAMCAJ105.2°109.6°
CARCASCAT117.9°119.9°
CARCASNAU118.1°120.0°
NAICAJNAM109.0°107.1°
NAICAJCAE121.3°119.0°
CAWCAXH10109.9°109.5°
CAWCAXH11110.0°109.5°
CAXCAWH12109.2°109.5°
CAXCAWH13109.1°109.5°
CAGCAOCAT121.6°120.0°
CAOCAGCAD125.2°119.8°
CAOCATCAS122.9°119.9°
CAOCATH16118.5°120.1°
CAGCADCAE121.3°118.7°
CAGCADCAC121.0°121.7°
NAMCAJCAE129.6°133.9°
CAJCAECAD115.5°118.2°
CAJCAECAF122.3°122.0°
CATCASNAU123.6°120.0°
CASCATH16118.6°120.0°
CASNAUSBB121.3°120.0°
CASNAUH5106.4°120.0°
CAECADCAC117.7°119.6°
CADCAECAF122.2°119.8°
CADCACCAB120.9°119.7°
CADCACH17119.6°120.2°
CAECAFCAA118.3°119.6°
CAECAFH20120.8°120.1°
CACCABCAA121.1°120.7°
CABCACH17119.6°120.2°
CACCABH18119.4°119.7°
NAUSBBOBD111.2°106.4°
NAUSBBOBC105.4°106.4°
NAUSBBCBE114.6°107.3°
SBBNAUH5106.4°120.0°
CAFCAACAB119.8°120.6°
CAFCAAH19120.1°119.7°
CAACAFH20120.8°120.3°
CAACABH18119.5°119.6°
CABCAAH19120.1°119.7°
OBDSBBOBC115.6°123.1°
OBDSBBCBE105.6°106.4°
OBCSBBCBE104.4°106.4°
SBBCBECBF118.1°120.0°
SBBCBECBJ126.7°120.0°
CBECBFCBG122.9°120.0°
CBFCBECBJ115.2°120.0°
CBECBFH1118.5°120.0°
CBFCBGCBH119.4°120.0°
CBGCBFH1118.5°120.0°
CBFCBGH2120.3°120.0°
CBECBJCL121.9°120.0°
CBECBJCBI123.1°120.0°
CBGCBHCBI119.9°120.0°
CBHCBGH2120.3°120.0°
CBGCBHH3120.1°120.0°
CLCBJCBI115.0°120.0°
CBJCBICBH119.4°120.0°
CBJCBIH4120.3°120.0°
CBICBHH3120.1°120.0°
CBHCBIH4120.3°120.0°
H6CBAH7109.5°109.5°
H8CAZH9109.5°109.6°
H10CAXH11109.5°109.5°
H12CAWH13109.5°109.5°
H21CANH22109.5°109.5°
H21CANH23109.5°109.5°
H22CANH23109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAZCBANAVH6120.1°120.0°
CAZCBANAVH7120.1°119.9°
CBACAZOAYH8119.8°119.9°
CBACAZOAYH9119.8°119.9°
CBACAZOAYCAX62.4°58.7°
CAZCBANAVCAR172.4°177.6°
CAZCBANAVCAW55.5°58.6°
CAZCBAH6H7119.6°120.1°
CBACAZH8H9120.4°120.1°
NAVCBACAZOAY57.2°56.9°
CBANAVCARCAQ15.2°63.7°
CBANAVCARCAW131.9°123.6°
CBANAVCARCAS163.6°116.4°
CBANAVCAWCAX55.7°58.6°
NAVCBAH6H7119.6°120.1°
NAVCBACAZH8177.0°176.8°
NAVCBACAZH962.7°63.1°
CBANAVCAWH12175.9°178.6°
CBANAVCAWH1364.4°61.4°
CAZOAYCAXCAW61.9°58.7°
OAYCAZCBAH6177.3°63.1°
OAYCAZCBAH763.0°176.8°
OAYCAZH8H9120.5°120.1°
CAZOAYCAXH10178.4°178.6°
CAZOAYCAXH1157.8°61.3°
CANCAKNALNAI177.9°180.0°
CANCAKNAINAH0.8°0.2°
CANCAKNALNAM179.6°180.0°
CANCAKNAICAJ178.1°180.0°
CAKCANH21H22120.0°120.0°
CAKCANH21H23120.0°120.0°
CAKCANH22H23120.0°120.0°
OAYCAXCAWNAV57.2°56.9°
OAYCAXCAWH10119.7°120.0°
OAYCAXCAWH11119.7°119.9°
CAXOAYCAZH8177.8°178.6°
CAXOAYCAZH957.5°61.3°
OAYCAXH10H11120.9°120.1°
OAYCAXCAWH12177.3°176.8°
OAYCAXCAWH1363.0°63.1°
CAPCAQCARH14180.0°179.9°
CAQCAPCAOH15180.0°180.0°
CAPCAQCARNAV178.4°180.0°
CAPCAQCARCAS2.9°0.1°
CAQCAPCAOCAG179.1°180.0°
CAQCAPCAOCAT4.0°0.0°
CARCAQCAPCAO1.8°0.0°
CAQCARNAVCAS178.7°180.0°
CAQCARNAVCAW116.7°59.9°
CAQCARCASCAT5.0°0.0°
CAQCARCASNAU177.6°179.7°
CARCAQCAPH15178.3°179.9°
CAPCAOCAGNAH45.8°51.3°
CAPCAOCAGCAT175.0°180.0°
CAPCAOCAGCAD138.5°128.5°
CAPCAOCATCAS1.9°0.1°
CAOCAPCAQH14178.3°179.9°
CAPCAOCATH16178.2°179.6°
NALCAKNAINAH178.9°179.8°
NALCAKNAICAJ0.0°0.0°
CAKNALNAMCAJ2.9°0.0°
NALCAKCANH210.0°90.0°
NALCAKCANH22120.0°150.0°
NALCAKCANH23120.0°30.0°
CAKNAINAHCAJ178.7°179.8°
CAKNAINAHCAG178.8°179.8°
NAICAKNALNAM1.7°0.0°
CAKNAICAJNAM1.9°0.0°
CAKNAICAJCAE179.9°180.0°
NAICAKCANH21177.6°89.9°
NAICAKCANH2257.6°30.0°
NAICAKCANH2362.4°150.0°
CARNAVCAWCAX167.8°177.6°
NAVCARCASCAT176.2°180.0°
NAVCARCASNAU3.7°0.3°
CARNAVCBAH652.3°62.4°
CARNAVCBAH767.4°57.7°
CARNAVCAWH1247.7°57.7°
CARNAVCAWH1372.0°62.4°
NAVCARCAQH141.6°0.1°
CAWNAVCARCAS64.5°120.0°
NAVCAWCAXH12120.2°119.9°
NAVCAWCAXH13120.2°120.0°
CAWNAVCBAH6175.6°61.4°
CAWNAVCBAH764.7°178.5°
NAVCAWCAXH10176.9°176.8°
NAVCAWCAXH1162.5°63.1°
NAVCAWH12H13119.4°120.1°
NAINAHCAGCAO178.3°179.8°
NAINAHCAGCAD2.4°0.4°
NAHNAICAJNAM179.2°179.8°
NAHNAICAJCAE1.0°0.2°
CAGNAHNAICAJ2.5°0.4°
NAHCAGCAOCAD175.7°179.8°
NAHCAGCAOCAT129.2°128.7°
NAHCAGCADCAE0.9°0.2°
NAHCAGCADCAC178.9°179.8°
NALNAMCAJNAI2.8°0.0°
NALNAMCAJCAE179.1°180.0°
CARCASCATCAO2.8°0.1°
CARCASCATNAU172.1°179.7°
CARCASNAUSBB146.4°148.7°
CARCASNAUH524.8°31.4°
CASCARCAQH14177.1°180.0°
CARCASCATH16177.2°179.7°
NAICAJNAMCAE178.0°180.0°
NAICAJCAECAD0.6°0.0°
NAICAJCAECAF179.1°180.0°
CAWCAXH10H11120.9°120.1°
CAXCAWH12H13119.4°120.1°
CAGCAOCATCAS176.7°179.9°
CAOCAGCADCAE176.3°180.0°
CAOCAGCADCAC3.5°0.0°
CAGCAOCAPH150.9°0.0°
CAGCAOCATH163.3°0.3°
CATCAOCAGCAD46.5°51.5°
CAOCATCASH16180.0°179.7°
CAOCATCASNAU174.9°179.7°
CATCAOCAPH15176.0°180.0°
CAGCADCAECAJ0.7°0.0°
CAGCADCAECAC179.8°180.0°
CAGCADCAECAF179.1°180.0°
CAGCADCACCAB179.2°179.9°
CAGCADCACH170.7°0.0°
NAMCAJCAECAD177.2°180.0°
NAMCAJCAECAF1.3°0.0°
CAJCAECADCAF178.5°180.0°
CAJCAECADCAC179.5°180.0°
CAJCAECAFCAA178.3°180.0°
CAJCAECAFH201.7°0.0°
CATCASNAUSBB25.7°30.9°
CATCASNAUH5147.3°148.9°
CASNAUSBBH5121.7°179.9°
CASNAUSBBOBD44.2°178.7°
CASNAUSBBOBC170.2°45.8°
CASNAUSBBCBE75.5°67.7°
NAUCASCATH165.1°0.0°
CAECADCACCAB1.0°0.0°
CADCAECAFCAA0.1°0.0°
CAECADCACH17179.1°180.0°
CADCAECAFH20179.9°180.0°
CACCADCAECAF1.1°0.0°
CADCACCABH17180.0°180.0°
CADCACCABCAA0.3°0.1°
CADCACCABH18179.7°180.0°
CAECAFCAAH20180.0°180.0°
CAECAFCAACAB1.3°0.1°
CAECAFCAAH19178.7°180.0°
CACCABCAACAF1.5°0.1°
CACCABCAAH18180.0°179.9°
CACCABCAAH19178.6°180.0°
NAUSBBOBDOBC120.2°122.9°
NAUSBBOBDCBE124.9°114.1°
NAUSBBOBCCBE121.2°114.1°
NAUSBBCBECBF13.9°118.5°
NAUSBBCBECBJ169.0°61.8°
CAFCAACABH19180.0°179.9°
CAFCAACABH18178.5°180.0°
CAACABCACH17179.7°179.9°
CABCAACAFH20178.7°179.9°
OBDSBBOBCCBE115.5°123.0°
OBDSBBCBECBF136.7°128.0°
OBDSBBCBECBJ46.2°51.7°
OBDSBBNAUH577.5°1.4°
OBCSBBCBECBF100.9°4.9°
OBCSBBCBECBJ76.1°175.4°
OBCSBBNAUH548.6°134.3°
SBBCBECBFCBJ177.4°179.7°
SBBCBECBFCBG179.1°180.0°
SBBCBECBJCL0.7°0.0°
SBBCBECBJCBI179.8°179.7°
SBBCBECBFH10.9°0.1°
CBESBBNAUH5162.8°112.2°
CBECBFCBGH1180.0°179.9°
CBECBFCBGCBH3.6°0.0°
CBFCBECBJCL176.4°179.7°
CBFCBECBJCBI2.7°0.6°
CBECBFCBGH2176.4°180.0°
CBGCBFCBECBJ3.5°0.3°
CBFCBGCBHH2180.0°180.0°
CBFCBGCBHCBI2.7°0.0°
CBFCBGCBHH3177.3°180.0°
CBECBJCLCBI179.1°179.7°
CBECBJCBICBH2.0°0.6°
CBJCBECBFH1176.5°179.8°
CBECBJCBIH4178.0°179.7°
CBGCBHCBICBJ2.0°0.3°
CBGCBHCBIH3180.0°180.0°
CBHCBGCBFH1176.4°179.9°
CBGCBHCBIH4178.1°180.0°
CLCBJCBICBH177.1°179.7°
CLCBJCBIH42.8°0.0°
CBJCBICBHH4180.0°179.7°
CBJCBICBHH3178.0°179.8°
CBICBHCBGH2177.3°180.0°
H1CBFCBGH23.6°0.1°
H2CBGCBHH32.7°0.0°
H3CBHCBIH41.9°0.0°
H6CBACAZH862.8°56.9°
H6CBACAZH957.5°177.0°
H7CBACAZH856.9°63.3°
H7CBACAZH9177.2°56.8°
H10CAXCAWH1263.0°63.2°
H10CAXCAWH1356.7°56.8°
H11CAXCAWH1257.6°56.8°
H11CAXCAWH13177.3°176.9°
H14CAQCAPH151.7°0.0°
H17CACCABH180.3°0.1°
H18CABCAAH191.4°0.1°
H19CAACAFH201.3°0.0°
H21CANH22H23120.0°120.0°

222415

PDB entries from 2024-07-10

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