Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

Y1F

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.52Å1.57Å
C1N3sing1.45Å1.53Å
C2C6sing1.50Å1.51Å
N3C4sing1.46Å1.48Å
N3C13sing1.35Å1.39Å
C4C5sing1.50Å1.58Å
C5C7sing1.49Å1.57Å
C6C7sing1.51Å1.62Å
C6C10sing1.55Å1.51Å
C7C8sing1.54Å1.53Å
C8N9sing1.49Å1.50Å
N9C10sing1.48Å1.53Å
N9C32sing1.35Å1.39Å
C13C14sing1.48Å1.51Å
C13O15doub1.22Å1.20Å
C14C16doub1.40Å1.42ÅAromatic
C14C20sing1.40Å1.42ÅAromatic
C16C17sing1.38Å1.37ÅAromatic
C17N18doub1.32Å1.34ÅAromatic
C17C21sing1.51Å1.50Å
N18C19sing1.32Å1.36ÅAromatic
C19C20doub1.39Å1.41ÅAromatic
C19O24sing1.36Å1.36Å
C21C22sing1.53Å1.54Å
C21C23sing1.53Å1.55Å
C22C23sing1.53Å1.54Å
O24C25sing1.43Å1.42Å
C25C26sing1.53Å1.54Å
C26C27sing1.53Å1.54Å
C26C31sing1.53Å1.55Å
C27C28sing1.53Å1.57Å
C28O29sing1.43Å1.43Å
O29C30sing1.43Å1.43Å
C30C31sing1.53Å1.56Å
C32C33sing1.48Å1.48Å
C32O34doub1.22Å1.24Å
C33C35doub1.40Å1.40ÅAromatic
C33C37sing1.39Å1.43ÅAromatic
C35C36sing1.36Å1.36ÅAromatic
C36C39doub1.39Å1.42ÅAromatic
C37C38doub1.40Å1.43ÅAromatic
C38C39sing1.41Å1.43ÅAromatic
C38N42sing1.35Å1.39ÅAromatic
C39N40sing1.37Å1.42ÅAromatic
N40N41sing1.40Å1.35ÅAromatic
N41N42doub1.29Å1.34ÅAromatic
C10H54sing1.09Å1.10Å
C10H53sing1.09Å1.10Å
C16H55sing1.08Å1.08Å
C20H56sing1.08Å1.08Å
C21H57sing1.09Å1.10Å
C22H58sing1.09Å1.10Å
C22H59sing1.09Å1.10Å
C23H61sing1.09Å1.10Å
C23H60sing1.09Å1.10Å
C25H63sing1.09Å1.10Å
C25H62sing1.09Å1.10Å
C26H64sing1.09Å1.10Å
C27H66sing1.09Å1.10Å
C27H65sing1.09Å1.10Å
C28H67sing1.09Å1.10Å
C28H68sing1.09Å1.10Å
C1H43sing1.09Å1.10Å
C1H44sing1.09Å1.10Å
C2H45sing1.09Å1.10Å
C2H46sing1.09Å1.10Å
C4H47sing1.09Å1.10Å
C4H48sing1.09Å1.10Å
C5H49sing1.09Å1.10Å
C5H50sing1.09Å1.10Å
C6H11sing1.09Å1.10Å
C7H12sing1.09Å1.10Å
C8H51sing1.09Å1.10Å
C8H52sing1.09Å1.10Å
C30H70sing1.09Å1.10Å
C30H69sing1.09Å1.10Å
C31H72sing1.09Å1.10Å
C31H71sing1.09Å1.10Å
C35H73sing1.08Å1.08Å
C36H74sing1.08Å1.08Å
C37H75sing1.08Å1.08Å
N40H76sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1N3113.4°110.1°
C1C2C6115.0°115.0°
C2C1H43108.4°109.3°
C2C1H44108.5°109.4°
C1C2H45108.1°108.4°
C1C2H46108.1°108.4°
C1N3C4121.0°121.3°
C1N3C13117.2°119.4°
N3C1H43108.5°109.4°
N3C1H44108.5°109.3°
C2C6C7120.5°116.1°
C2C6C10105.8°108.8°
C6C2H45108.1°108.3°
C6C2H46108.1°108.4°
C2C6H11109.3°109.2°
C4N3C13120.2°119.3°
N3C4C5110.9°113.2°
N3C4H47109.1°108.7°
N3C4H48109.1°108.7°
N3C13C14123.0°120.0°
N3C13O15117.9°120.0°
C4C5C7113.5°116.5°
C5C4H47109.1°108.7°
C5C4H48109.1°108.8°
C4C5H49108.5°108.1°
C4C5H50108.5°108.0°
C5C7C6119.5°119.9°
C5C7C8109.4°112.9°
C7C5H49108.5°108.1°
C7C5H50108.4°108.0°
C5C7H12108.7°106.8°
C7C6C10103.5°104.6°
C6C7C8101.5°104.2°
C7C6H11108.0°108.7°
C6C7H12108.1°106.5°
C6C10N9102.0°106.9°
C6C10H54111.3°110.0°
C6C10H53111.3°110.0°
C10C6H11109.3°109.2°
C7C8N9101.0°102.4°
C8C7H12109.2°105.5°
C7C8H51111.6°110.9°
C7C8H52111.5°110.8°
C8N9C10113.1°106.1°
C8N9C32127.2°127.0°
N9C8H51111.6°110.8°
N9C8H52111.6°110.8°
C10N9C32119.7°126.9°
N9C10H54111.3°110.0°
N9C10H53111.3°110.0°
N9C32C33121.5°120.1°
N9C32O34119.2°119.9°
C14C13O15119.0°120.0°
C13C14C16116.1°120.9°
C13C14C20121.7°120.9°
C16C14C20122.2°118.2°
C14C16C17118.3°119.1°
C14C16H55120.8°120.4°
C14C20C19112.9°118.9°
C14C20H56123.6°120.6°
C16C17N18122.0°121.0°
C16C17C21122.0°119.5°
C17C16H55120.8°120.4°
N18C17C21115.8°119.5°
C17N18C19119.2°121.9°
C17C21C22120.2°117.5°
C17C21C23121.7°117.5°
C17C21H57115.3°115.5°
N18C19C20125.4°120.8°
N18C19O24118.9°119.6°
C20C19O24115.7°119.6°
C19C20H56123.6°120.5°
C19O24C25119.2°117.0°
C22C21C2359.6°60.0°
C21C22C2360.7°60.0°
C22C21H57114.5°117.5°
C21C22H58119.9°117.5°
C21C22H59119.9°117.4°
C21C23C2259.7°60.0°
C23C21H57114.3°117.5°
C21C23H61120.1°117.5°
C21C23H60120.1°117.5°
C23C22H58119.9°117.5°
C23C22H59119.9°117.4°
C22C23H61120.0°117.5°
C22C23H60120.0°117.5°
O24C25C26105.5°109.5°
O24C25H63110.5°109.5°
O24C25H62110.4°109.5°
C25C26C27105.9°109.5°
C25C26C31109.8°109.5°
C26C25H63110.4°109.4°
C26C25H62110.5°109.5°
C25C26H64111.1°109.5°
C27C26C31107.8°109.0°
C26C27C28107.9°109.1°
C27C26H64111.1°109.6°
C26C27H66109.9°109.5°
C26C27H65109.9°109.6°
C26C31C30110.8°109.1°
C31C26H64110.9°109.6°
C26C31H72109.2°109.5°
C26C31H71109.1°109.5°
C27C28O29106.0°109.4°
C28C27H66109.9°109.5°
C28C27H65109.9°109.5°
C27C28H67110.4°109.5°
C27C28H68110.3°109.4°
C28O29C30115.3°114.1°
O29C28H67110.3°109.5°
O29C28H68110.4°109.5°
O29C30C31111.9°109.4°
O29C30H70108.9°109.5°
O29C30H69108.8°109.5°
C31C30H70108.9°109.5°
C31C30H69108.9°109.5°
C30C31H72109.1°109.5°
C30C31H71109.2°109.5°
C33C32O34119.2°120.0°
C32C33C35112.5°119.8°
C32C33C37122.3°119.9°
C35C33C37125.1°120.3°
C33C35C36120.4°120.4°
C33C35H73119.8°119.7°
C33C37C38113.9°119.5°
C33C37H75123.0°120.3°
C35C36C39117.7°120.1°
C36C35H73119.8°119.8°
C35C36H74121.1°119.9°
C36C39C38122.7°120.2°
C36C39N40131.6°133.7°
C39C36H74121.2°120.0°
C37C38C39120.2°119.4°
C37C38N42133.4°133.1°
C38C37H75123.0°120.2°
C39C38N42106.5°107.6°
C38C39N40105.8°106.1°
C38N42N41108.9°110.2°
C39N40N41107.9°106.7°
C39N40H76126.0°126.6°
N40N41N42110.9°109.5°
N41N40H76126.1°126.7°
H54C10H53109.5°109.9°
H58C22H59109.5°115.6°
H61C23H60109.5°115.5°
H63C25H62109.5°109.5°
H66C27H65109.5°109.6°
H67C28H68109.5°109.5°
H43C1H44109.5°109.3°
H45C2H46109.5°108.2°
H47C4H48109.4°108.6°
H49C5H50109.5°107.9°
H51C8H52109.5°110.9°
H70C30H69109.5°109.5°
H72C31H71109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1N3H43120.5°120.1°
C2C1N3H44120.6°120.2°
C1C2C6H45120.8°121.4°
C1C2C6H46120.8°121.5°
C2C1N3C418.5°62.1°
C2C1N3C13176.0°117.9°
C1C2C6C776.9°81.4°
C1C2C6C10166.5°161.0°
C2C1H43H44118.2°119.7°
C1C2H45H46117.5°117.3°
C1C2C6H1148.9°41.9°
N3C1C2C658.1°74.4°
C1N3C4C13165.0°180.0°
C1N3C4C587.0°74.5°
C1N3C13C14178.8°176.5°
C1N3C13O150.9°3.6°
N3C1H43H44118.2°119.7°
N3C1C2H45178.9°164.2°
N3C1C2H4662.7°47.0°
C1N3C4H4733.3°164.6°
C1N3C4H48152.8°46.5°
C2C6C7C545.8°31.7°
C2C6C7C10117.8°119.9°
C2C6C7H11126.4°123.6°
C2C6C10H11117.5°119.2°
C2C6C7C874.4°95.8°
C2C6C10N999.1°123.5°
C2C6C10H54142.1°117.1°
C2C6C10H5319.7°4.1°
C6C2C1H43178.7°165.4°
C6C2C1H4462.5°45.8°
C6C2H45H46117.5°117.3°
C2C6C7H12170.7°153.0°
N3C4C5H47120.2°121.0°
N3C4C5H48120.2°121.0°
N3C4C5C777.7°78.1°
C4N3C13C1415.6°3.5°
C4N3C13O15164.7°176.4°
C4N3C1H43102.0°177.7°
C4N3C1H44139.1°58.1°
N3C4H47H48119.4°118.1°
N3C4C5H49161.7°43.7°
N3C4C5H5042.9°160.2°
C13N3C4C5108.0°105.5°
N3C13C14O15179.7°179.9°
N3C13C14C1663.3°143.4°
N3C13C14C20119.6°36.6°
C13N3C1H4363.4°2.3°
C13N3C1H4455.4°121.9°
C13N3C4H47131.8°15.4°
C13N3C4H4812.2°133.5°
C4C5C7H49120.6°121.8°
C4C5C7H50120.6°121.7°
C4C5C7C641.3°37.9°
C4C5C7C874.9°161.3°
C5C4H47H48119.3°118.2°
C4C5H49H50118.2°116.6°
C4C5C7H12165.9°83.3°
C5C7C6C8120.3°127.5°
C5C7C6H12124.9°121.3°
C5C7C6C10163.6°151.6°
C5C7C8H12118.8°116.3°
C5C7C8N9165.5°170.1°
C7C5C4H4742.5°160.9°
C7C5C4H48162.1°42.9°
C7C5H49H50118.2°116.6°
C5C7C6H1180.6°91.9°
C5C7C8H5146.8°51.9°
C5C7C8H5275.9°71.7°
C7C6C10H11114.9°116.2°
C6C7C8H12114.0°112.0°
C6C7C8N938.3°38.4°
C7C6C10N928.6°1.2°
C7C6C10H5490.2°118.2°
C7C6C10H53147.3°120.6°
C7C6C2H45162.3°157.3°
C7C6C2H4644.0°40.1°
C6C7C5H49161.9°83.9°
C6C7C5H5079.3°159.6°
C6C7C8H5180.3°79.8°
C6C7C8H52157.0°156.6°
C10C6C7C843.4°24.1°
C6C10N9C84.7°23.4°
C6C10N9H54118.8°119.4°
C6C10N9H53118.8°119.4°
C6C10N9C32172.7°156.5°
C6C10H54H53123.5°121.3°
C10C6C2H4545.7°39.6°
C10C6C2H4672.7°77.5°
C10C6C7H1271.5°87.1°
C7C8N9H51118.6°118.3°
C7C8N9H52118.6°118.2°
C7C8N9C1022.6°38.1°
C7C8N9C32160.3°141.8°
C8C7C5H4945.7°39.5°
C8C7C5H50164.5°77.0°
C8C7C6H11159.2°140.6°
C7C8H51H52123.9°123.6°
C8N9C10C32177.4°179.9°
C8N9C32C337.1°174.6°
C8N9C32O34169.4°5.4°
C8N9C10H54114.1°142.8°
C8N9C10H53123.5°96.0°
N9C8C7H1275.7°73.6°
N9C8H51H52123.9°123.5°
C10N9C32C33169.8°5.5°
C10N9C32O3413.6°174.5°
N9C10H54H53123.5°121.2°
N9C10C6H11143.4°117.4°
C10N9C8H5196.1°80.2°
C10N9C8H52141.2°156.3°
N9C32C33O34176.5°179.9°
N9C32C33C3563.6°22.3°
N9C32C33C37118.7°157.9°
C32N9C10H5468.5°37.1°
C32N9C10H5353.9°84.1°
C32N9C8H5181.0°99.9°
C32N9C8H5241.7°23.6°
C13C14C16C20177.1°180.0°
C13C14C16C17176.2°180.0°
C13C14C20C19175.9°179.5°
C13C14C16H553.8°0.3°
C13C14C20H564.1°0.5°
O15C13C14C16116.3°36.6°
O15C13C14C2060.7°143.5°
C14C16C17H55180.0°179.7°
C14C16C17N180.9°0.3°
C14C16C17C21174.8°179.7°
C16C14C20C191.1°0.5°
C16C14C20H56179.0°179.5°
C20C14C16C170.8°0.0°
C14C20C19N181.5°0.8°
C14C20C19H56180.0°180.0°
C14C20C19O24176.8°179.9°
C20C14C16H55179.1°179.7°
C16C17N18C21175.9°180.0°
C16C17N18C191.3°0.0°
C16C17C21C22147.7°85.0°
C16C17C21C23141.5°16.4°
C16C17C21H574.1°129.4°
C17N18C19C201.6°0.5°
C17N18C19O24176.6°179.7°
N18C17C21C2236.3°95.0°
N18C17C21C2334.5°163.6°
N18C17C16H55179.1°180.0°
N18C17C21H57180.0°50.7°
C21C17N18C19174.6°180.0°
C17C21C22C23111.3°107.5°
C17C21C22H57143.9°145.0°
C17C21C23H57145.9°145.0°
C21C17C16H555.3°0.0°
C17C21C22H58139.1°145.0°
C17C21C22H591.6°0.0°
C17C21C23H610.5°0.0°
C17C21C23H60141.7°145.0°
N18C19C20O24178.3°179.2°
N18C19O24C251.5°0.8°
N18C19C20H56178.5°179.2°
C20C19O24C25180.0°180.0°
C19O24C25C26177.4°180.0°
O24C19C20H563.2°0.1°
C19O24C25H6363.2°60.0°
C19O24C25H6258.0°60.0°
C22C21C23H57105.3°107.5°
C21C22C23H58109.7°107.5°
C21C22C23H59109.6°107.4°
C21C22H58H59144.4°145.7°
C22C21C23H61109.4°107.5°
C22C21C23H60109.4°107.5°
C21C23H61H60144.9°145.7°
C23C22H58H59144.4°145.7°
C22C23H61H60144.9°145.7°
O24C25C26H63119.4°120.0°
O24C25C26H62119.4°120.1°
O24C25C26C27171.7°175.0°
O24C25C26C3172.1°65.4°
O24C25H63H62121.8°120.1°
O24C25C26H6451.0°54.8°
C25C26C27C31117.5°119.9°
C25C26C27H64120.7°120.2°
C25C26C31H64123.2°120.2°
C25C26C27C28179.2°176.9°
C25C26C31C30168.4°176.9°
C26C25H63H62121.8°120.0°
C25C26C27H6661.0°63.3°
C25C26C27H6559.5°57.0°
C25C26C31H7248.2°57.0°
C25C26C31H7171.4°63.3°
C27C26C31H64121.8°119.9°
C26C27C28H66119.7°119.9°
C26C27C28H65119.8°119.9°
C26C27C28O2965.2°57.6°
C27C26C31C3053.4°57.0°
C27C26C25H6352.3°65.0°
C27C26C25H6268.9°55.0°
C26C27H66H65120.8°120.2°
C26C27C28H6754.2°62.4°
C26C27C28H68175.3°177.6°
C27C26C31H7266.8°62.9°
C27C26C31H71173.6°176.9°
C31C26C27C2861.7°57.0°
C26C31C30O2949.4°57.6°
C26C31C30H72120.2°119.9°
C26C31C30H71120.2°119.9°
C31C26C25H63168.5°54.6°
C31C26C25H6247.3°174.5°
C31C26C27H66178.6°176.9°
C31C26C27H6558.1°62.9°
C26C31C30H7070.9°62.4°
C26C31C30H69169.8°177.6°
C26C31H72H71119.4°120.2°
C27C28O29H67119.5°120.0°
C27C28O29H68119.5°119.9°
C27C28O29C3063.6°61.2°
C28C27C26H6460.1°63.0°
C28C27H66H65120.7°120.1°
C27C28H67H68121.6°120.0°
C28O29C30C3156.7°61.1°
O29C28C27H66175.0°177.5°
O29C28C27H6554.5°62.3°
O29C28H67H68121.6°120.1°
C28O29C30H7063.7°58.8°
C28O29C30H69177.1°178.9°
O29C30C31H70120.4°119.9°
O29C30C31H69120.3°120.0°
C30O29C28H6755.9°58.8°
C30O29C28H68176.9°178.9°
O29C30H70H69118.9°120.1°
O29C30C31H7270.8°62.3°
O29C30C31H71169.6°177.4°
C30C31C26H6468.4°63.0°
C31C30H70H69118.9°120.0°
C30C31H72H71119.4°120.2°
C32C33C35C37177.6°179.8°
C32C33C35C36177.9°179.9°
C32C33C37C38176.0°180.0°
C32C33C35H732.1°0.0°
C32C33C37H754.0°0.1°
O34C32C33C35119.9°157.6°
O34C32C33C3757.8°22.2°
C33C35C36H73180.0°180.0°
C33C35C36C391.2°0.0°
C35C33C37C381.4°0.2°
C33C35C36H74178.8°180.0°
C35C33C37H75178.6°179.7°
C37C33C35C360.2°0.3°
C33C37C38H75180.0°179.9°
C33C37C38C392.0°0.1°
C33C37C38N42177.9°180.0°
C37C33C35H73179.8°179.8°
C35C36C39H74180.0°180.0°
C35C36C39C380.6°0.3°
C35C36C39N40179.3°180.0°
C36C39C38C371.1°0.3°
C36C39C38N40179.9°179.8°
C36C39C38N42178.8°179.7°
C36C39N40N41179.0°180.0°
C39C36C35H73178.8°180.0°
C36C39N40H760.9°0.0°
C37C38C39N42180.0°179.9°
C37C38C39N40178.9°179.9°
C37C38N42N41179.1°179.5°
C38C39N40N410.9°0.3°
C39C38N42N410.9°0.4°
C38C39C36H74179.4°179.7°
C39C38C37H75178.0°180.0°
C38C39N40H76179.1°179.7°
N42C38C39N401.1°0.1°
C38N42N41N400.4°0.6°
N42C38C37H752.1°0.1°
C39N40N41H76180.0°180.0°
C39N40N41N420.3°0.5°
N40C39C36H740.6°0.1°
N42N41N40H76179.7°179.5°
H54C10C6H1124.6°2.0°
H53C10C6H1197.8°123.2°
H57C21C22H584.8°0.0°
H57C21C22H59145.5°145.0°
H57C21C23H61145.4°145.0°
H57C21C23H604.1°0.0°
H58C22C23H61140.9°145.0°
H58C22C23H600.3°0.0°
H59C22C23H610.2°0.1°
H59C22C23H60141.0°145.1°
H63C25C26H6468.3°174.8°
H62C25C26H64170.4°65.2°
H64C26C27H6659.7°56.9°
H64C26C27H65179.8°177.1°
H64C26C31H72171.4°177.2°
H64C26C31H7151.8°56.9°
H66C27C28H6765.6°57.5°
H66C27C28H6855.5°62.5°
H65C27C28H67174.0°177.7°
H65C27C28H6865.0°57.6°
H43C1C2H4560.5°44.1°
H43C1C2H4657.9°73.1°
H44C1C2H4558.4°75.6°
H44C1C2H46176.8°167.2°
H45C2C6H1171.9°79.5°
H46C2C6H11169.8°163.4°
H47C4C5H4978.1°77.3°
H47C4C5H50163.1°39.2°
H48C4C5H4941.5°164.7°
H48C4C5H5077.4°78.8°
H49C5C7H1273.5°154.9°
H50C5C7H1245.3°38.4°
H11C6C7H1244.3°29.4°
H12C7C8H51165.7°168.2°
H12C7C8H5242.9°44.6°
H70C30C31H72168.9°177.7°
H70C30C31H7149.3°57.5°
H69C30C31H7249.6°57.7°
H69C30C31H7170.0°62.5°
H73C35C36H741.2°0.1°

250835

PDB entries from 2026-03-18

PDB statisticsPDBj update infoContact PDBjnumon